Wall clock time and date at job start Tue Mar 31 2020 05:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00248 * 2 1 4 4 H 1.48499 * 109.47406 * 240.00133 * 3 2 1 5 5 H 1.48508 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47405 * 119.99965 * 3 2 1 7 7 C 1.37876 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99846 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47184 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47197 * 179.97438 * 11 10 9 13 13 O 1.42099 * 108.57602 * 65.51319 * 12 11 10 14 14 O 1.42096 * 108.58091 * 294.48464 * 12 11 10 15 15 C 1.81404 * 101.92046 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47185 * 185.44441 * 15 12 11 17 17 N 1.30737 * 126.36324 * 91.66309 * 16 15 12 18 18 N 1.28429 * 110.64904 * 180.02562 * 17 16 15 19 19 N 1.28952 * 110.20062 * 0.02562 * 18 17 16 20 20 N 1.35072 * 126.36231 * 271.71308 * 16 15 12 21 21 C 1.40257 * 127.39106 * 359.70081 * 20 16 15 22 22 C 1.38819 * 120.06171 * 316.00832 * 21 20 16 23 23 C 1.38128 * 119.93335 * 179.69449 * 22 21 20 24 24 C 1.38277 * 120.06073 * 0.57485 * 23 22 21 25 25 C 1.38270 * 120.13308 * 359.72310 * 24 23 22 26 26 C 1.38118 * 120.06415 * 359.97438 * 25 24 23 27 27 H 0.97007 * 119.99422 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47056 * 60.00236 * 9 7 2 29 29 H 1.09003 * 109.46924 * 300.00150 * 9 7 2 30 30 H 1.08994 * 109.47287 * 59.99614 * 10 9 7 31 31 H 1.09003 * 109.46910 * 299.99607 * 10 9 7 32 32 H 1.09002 * 109.47208 * 59.99531 * 11 10 9 33 33 H 1.09003 * 109.46675 * 299.99505 * 11 10 9 34 34 H 1.08999 * 109.47136 * 65.44670 * 15 12 11 35 35 H 1.09003 * 109.47125 * 305.44366 * 15 12 11 36 36 H 1.07993 * 120.03284 * 359.97438 * 22 21 20 37 37 H 1.08002 * 119.97028 * 180.31543 * 23 22 21 38 38 H 1.08010 * 119.93298 * 179.73612 * 24 23 22 39 39 H 1.08001 * 119.96966 * 179.97438 * 25 24 23 40 40 H 1.08007 * 120.03128 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 8 3.3775 -6.3478 1.2238 14 8 3.3774 -6.3466 -1.2277 15 6 1.5533 -7.8040 -0.0018 16 6 2.3685 -9.0643 0.1324 17 7 2.6835 -9.6687 1.2481 18 7 3.3872 -10.7168 1.0124 19 7 3.5700 -10.8544 -0.2567 20 7 2.9104 -9.7790 -0.8777 21 6 2.8277 -9.5096 -2.2516 22 6 1.6161 -9.1325 -2.8147 23 6 1.5391 -8.8617 -4.1669 24 6 2.6647 -8.9775 -4.9617 25 6 3.8714 -9.3588 -4.4048 26 6 3.9559 -9.6248 -3.0521 27 1 -0.4850 0.8402 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5570 0.8897 30 1 2.8719 -3.6043 0.8894 31 1 2.8718 -3.6043 -0.8906 32 1 0.8538 -5.0445 -0.8914 33 1 0.8533 -5.0450 0.8887 34 1 0.9930 -7.8316 -0.9363 35 1 0.8597 -7.7291 0.8357 36 1 0.7357 -9.0466 -2.1952 37 1 0.5979 -8.5634 -4.6047 38 1 2.6011 -8.7693 -6.0197 39 1 4.7488 -9.4488 -5.0281 40 1 4.8989 -9.9223 -2.6176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058171930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:07 Heat of formation + Delta-G solvation = 76.604526 kcal Electronic energy + Delta-G solvation = -26155.706327 eV Core-core repulsion = 22294.068280 eV Total energy + Delta-G solvation = -3861.638047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.63277 -39.85153 -37.08526 -36.14773 -35.69388 -34.79733 -33.90027 -32.28932 -31.59650 -30.68646 -29.63626 -27.92998 -25.13394 -23.99382 -23.61610 -22.45531 -22.00466 -20.63223 -19.17809 -18.80981 -17.57511 -17.05653 -16.78560 -16.46649 -16.28546 -16.03324 -15.47188 -15.11958 -14.91135 -14.66363 -14.52690 -14.30996 -14.05356 -13.49070 -13.30250 -12.76190 -12.71514 -12.38144 -12.24139 -12.17626 -12.09434 -12.05669 -11.94777 -11.85255 -11.43734 -11.33914 -11.28464 -10.95746 -10.94159 -10.55750 -10.36471 -10.03065 -9.57945 -9.48552 -9.28299 -9.21985 -8.45635 -6.11125 -4.14371 -0.46257 0.12443 0.76518 0.96130 1.27777 1.86522 2.48448 2.94209 3.08435 3.29202 3.33327 3.36510 3.52678 3.65656 4.00646 4.14867 4.28349 4.38045 4.49755 4.55881 4.59539 4.60718 4.79295 4.92455 4.93699 4.97200 4.99009 5.06232 5.25616 5.38528 5.67357 5.69975 5.70676 5.89836 5.92042 6.16668 6.32853 6.34710 6.76344 7.48697 7.57982 7.86347 7.99578 8.26103 8.91351 9.50740 10.99976 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.015622 B = 0.002886 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.952178 B = 9700.093498 C =10747.542742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.579 4.579 12 S 2.397 3.603 13 O -0.914 6.914 14 O -0.921 6.921 15 C -0.566 4.566 16 C 0.259 3.741 17 N -0.302 5.302 18 N -0.031 5.031 19 N -0.067 5.067 20 N -0.321 5.321 21 C 0.117 3.883 22 C -0.118 4.118 23 C -0.097 4.097 24 C -0.098 4.098 25 C -0.098 4.098 26 C -0.084 4.084 27 H 0.263 0.737 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.159 0.841 35 H 0.179 0.821 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 -20.462 -9.758 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.712 4.712 12 S 2.576 3.424 13 O -0.911 6.911 14 O -0.918 6.918 15 C -0.690 4.690 16 C -0.018 4.018 17 N -0.153 5.153 18 N -0.025 5.025 19 N -0.051 5.051 20 N -0.113 5.113 21 C 0.026 3.974 22 C -0.139 4.139 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.104 4.104 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.177 0.823 35 H 0.197 0.803 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.650 -21.507 -8.912 23.339 hybrid contribution -0.924 1.304 -0.575 1.698 sum 0.727 -20.204 -9.487 22.332 Atomic orbital electron populations 1.69941 1.06084 1.26983 1.50389 1.25005 0.94897 0.99370 0.94993 0.86611 0.79589 0.82750 0.78828 1.20093 1.21218 1.20059 1.21195 0.93270 0.90784 1.51391 0.92356 1.19087 0.93482 0.90260 0.97889 1.21590 0.99526 0.90816 1.02584 1.30267 1.15104 1.13927 1.11855 1.09251 0.78925 0.77999 0.76186 1.93632 1.67559 1.84847 1.45016 1.93606 1.67724 1.85153 1.45314 1.29649 1.15311 1.09465 1.14606 1.24208 0.97113 0.96171 0.84326 1.74573 1.14645 1.04098 1.21960 1.78097 1.08283 1.09619 1.06506 1.82713 1.15877 1.04611 1.01913 1.48911 1.37023 1.18511 1.06902 1.17528 0.96034 1.05775 0.78023 1.21085 0.95306 1.01008 0.96475 1.21097 0.99741 0.98593 0.92105 1.21440 0.92477 0.96956 1.00799 1.21157 0.98693 0.97955 0.93821 1.21078 0.97051 0.98236 0.94007 0.92780 0.95972 0.95915 0.91124 0.91197 0.84792 0.84562 0.82299 0.80316 0.84794 0.84050 0.84538 0.84243 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.34 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 10 C -0.11 -1.99 5.16 -26.73 -0.14 -2.13 16 11 C -0.58 -7.48 5.81 37.16 0.22 -7.27 16 12 S 2.40 32.00 4.71 -107.50 -0.51 31.50 16 13 O -0.91 -15.77 18.07 -57.83 -1.04 -16.82 16 14 O -0.92 -14.35 18.10 -57.83 -1.05 -15.39 16 15 C -0.57 -5.26 6.06 36.00 0.22 -5.04 16 16 C 0.26 3.39 7.21 -155.19 -1.12 2.27 16 17 N -0.30 -4.63 12.15 32.75 0.40 -4.23 16 18 N -0.03 -0.48 13.39 60.35 0.81 0.33 16 19 N -0.07 -0.97 13.84 60.35 0.84 -0.13 16 20 N -0.32 -4.15 3.73 -7.97 -0.03 -4.18 16 21 C 0.12 1.27 6.25 -83.57 -0.52 0.74 16 22 C -0.12 -0.96 8.58 -39.41 -0.34 -1.30 16 23 C -0.10 -0.62 10.04 -39.61 -0.40 -1.02 16 24 C -0.10 -0.61 10.04 -39.55 -0.40 -1.01 16 25 C -0.10 -0.71 10.04 -39.61 -0.40 -1.10 16 26 C -0.08 -0.81 9.91 -39.41 -0.39 -1.20 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.13 1.34 8.14 -51.92 -0.42 0.92 16 33 H 0.14 1.44 8.14 -51.92 -0.42 1.01 16 34 H 0.16 0.90 5.21 -51.92 -0.27 0.63 16 35 H 0.18 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.13 0.79 6.38 -52.49 -0.33 0.45 16 37 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -37.33 363.64 -8.00 -45.34 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -4.80 Total: -3.36 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -3.82 Total: -29.57 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 2.75 Total: -33.18 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -2.09 Total: -32.21 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 32.00 SS G_CDS: -0.51 Total: 31.50 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.33 -8.00 -45.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058171930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.940 kcal (2) G-P(sol) polarization free energy of solvation -37.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds