Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39722 * 125.77569 * 2 1 4 4 C 1.36165 * 107.86152 * 180.15360 * 3 2 1 5 5 N 1.39326 * 126.27048 * 179.88532 * 4 3 2 6 6 C 1.34777 * 119.99760 * 359.40765 * 5 4 3 7 7 O 1.21703 * 120.00020 * 0.28112 * 6 5 4 8 8 C 1.46468 * 119.99967 * 180.27636 * 6 5 4 9 9 C 1.34849 * 119.99812 * 180.02562 * 8 6 5 10 10 C 1.47157 * 119.99663 * 180.02562 * 9 8 6 11 11 C 1.39944 * 120.02064 * 359.72879 * 10 9 8 12 12 C 1.37105 * 119.97659 * 179.69146 * 11 10 9 13 13 C 1.39784 * 120.02214 * 0.60204 * 12 11 10 14 14 C 1.43190 * 119.98172 * 179.69264 * 13 12 11 15 15 N 9.90126 * 148.39868 * 179.49561 * 5 1 2 16 16 C 1.39774 * 120.03662 * 359.67761 * 13 12 11 17 17 C 1.37106 * 120.02479 * 0.02562 * 16 13 12 18 18 N 1.35821 * 107.46459 * 359.61893 * 4 3 2 19 19 C 1.46504 * 126.09131 * 180.20522 * 18 4 3 20 20 C 1.50703 * 109.47043 * 90.00395 * 19 18 4 21 21 H 1.08001 * 120.00041 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99950 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00190 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00142 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46738 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47191 * 119.99437 * 24 22 20 27 27 H 1.48498 * 109.46993 * 240.00040 * 24 22 20 28 28 N 1.30835 * 125.77953 * 179.72768 * 2 1 3 29 29 H 1.09002 * 109.47253 * 270.24984 * 1 2 3 30 30 H 1.08999 * 109.47122 * 30.25248 * 1 2 3 31 31 H 1.09003 * 109.47168 * 150.24842 * 1 2 3 32 32 H 1.08007 * 126.07338 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00451 * 179.69285 * 5 4 3 34 34 H 1.08002 * 120.00321 * 0.02562 * 8 6 5 35 35 H 1.08001 * 120.00403 * 0.02562 * 9 8 6 36 36 H 1.07994 * 120.00828 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.98846 * 180.27749 * 12 11 10 38 38 H 1.07997 * 119.99050 * 180.02562 * 16 13 12 39 39 H 1.07991 * 120.01437 * 180.02562 * 17 16 13 40 40 H 1.09001 * 109.46948 * 209.99521 * 19 18 4 41 41 H 1.08994 * 109.47319 * 329.99996 * 19 18 4 42 42 H 0.96995 * 120.00135 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1336 0.0000 4 6 3.6195 0.7148 -0.0035 5 7 4.7492 1.5301 -0.0069 6 6 4.6126 2.8708 -0.0190 7 8 3.5024 3.3694 -0.0218 8 6 5.8003 3.7279 -0.0288 9 6 5.6636 5.0694 -0.0404 10 6 6.8569 5.9305 -0.0507 11 6 8.1337 5.3577 -0.0428 12 6 9.2449 6.1607 -0.0588 13 6 9.1027 7.5513 -0.0704 14 6 10.2639 8.3892 -0.0805 15 7 11.1851 9.0539 -0.0865 16 6 7.8278 8.1243 -0.0724 17 6 6.7155 7.3228 -0.0625 18 7 3.6088 -0.6434 0.0030 19 6 4.7859 -1.5157 0.0065 20 6 5.1903 -1.8080 1.4285 21 1 4.6272 -1.3859 2.2477 22 6 6.2799 -2.6134 1.6836 23 7 6.9660 -3.1270 0.6860 24 14 6.7817 -2.9752 3.4462 25 1 5.8545 -2.2827 4.3768 26 1 6.7232 -4.4394 3.6869 27 1 8.1664 -2.4906 3.6760 28 7 2.2719 -1.0614 0.0050 29 1 -0.3634 0.0045 1.0277 30 1 -0.3633 0.8877 -0.5177 31 1 -0.3634 -0.8922 -0.5100 32 1 1.9874 2.1599 0.0004 33 1 5.6342 1.1328 -0.0047 34 1 6.7856 3.2855 -0.0266 35 1 4.6784 5.5119 -0.0421 36 1 8.2437 4.2834 -0.0294 37 1 10.2303 5.7188 -0.0572 38 1 7.7189 9.1987 -0.0818 39 1 5.7306 7.7657 -0.0646 40 1 4.5475 -2.4495 -0.5027 41 1 5.6073 -1.0195 -0.5102 42 1 7.7322 -3.6939 0.8655 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058191300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = 111.918390 kcal Electronic energy + Delta-G solvation = -26151.841440 eV Core-core repulsion = 22292.123860 eV Total energy + Delta-G solvation = -3859.717580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.133 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87009 -40.06557 -39.16890 -36.96687 -34.83932 -34.40520 -33.78813 -32.08895 -31.78218 -30.61723 -29.15419 -28.25994 -26.06971 -25.45916 -23.35722 -23.04303 -22.39425 -20.38551 -19.73512 -19.51849 -18.97627 -17.32652 -16.95032 -16.60876 -15.89935 -15.71162 -15.17240 -15.13376 -14.90989 -14.50390 -14.45750 -14.09955 -14.02788 -13.98902 -13.62989 -13.19700 -13.03010 -12.89982 -12.79850 -12.52699 -12.51255 -12.12004 -12.08904 -11.80201 -11.60134 -11.44093 -11.09893 -10.94062 -10.70568 -10.41642 -10.37288 -10.02089 -9.82054 -9.61964 -9.57481 -8.75900 -8.75245 -7.93100 -7.46518 -6.36755 -4.45216 -0.22044 0.85432 1.28492 2.23905 2.44780 2.70801 2.80471 3.12512 3.21635 3.25583 3.28766 3.41413 3.46582 3.66459 3.74493 4.20574 4.23595 4.25572 4.33299 4.71533 4.79782 4.82979 4.95802 4.96844 5.21377 5.33690 5.42457 5.57841 5.61242 5.64936 5.77370 5.91477 6.02186 6.13689 6.14400 6.17749 6.24697 6.28232 6.38736 6.64540 6.80544 7.01382 7.04488 7.48451 7.55108 7.59412 7.76439 7.86718 8.24568 8.58940 8.68098 9.22694 10.70343 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.009533 B = 0.002569 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.490680 B =10896.641157 C =13377.580683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.291 4.291 4 C 0.298 3.702 5 N -0.631 5.631 6 C 0.550 3.450 7 O -0.518 6.518 8 C -0.182 4.182 9 C -0.036 4.036 10 C -0.036 4.036 11 C -0.106 4.106 12 C -0.068 4.068 13 C -0.027 4.027 14 C 0.254 3.746 15 N -0.417 5.417 16 C -0.071 4.071 17 C -0.099 4.099 18 N -0.346 5.346 19 C 0.256 3.744 20 C -0.539 4.539 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 N -0.283 5.283 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.418 0.582 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 18.702 -2.971 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 C -0.323 4.323 4 C 0.076 3.924 5 N -0.277 5.277 6 C 0.339 3.661 7 O -0.395 6.395 8 C -0.202 4.202 9 C -0.055 4.055 10 C -0.037 4.037 11 C -0.124 4.124 12 C -0.088 4.088 13 C -0.030 4.030 14 C -0.062 4.062 15 N -0.092 5.092 16 C -0.091 4.091 17 C -0.117 4.117 18 N -0.132 5.132 19 C 0.139 3.861 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.206 1.206 28 N -0.108 5.108 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.179 0.821 33 H 0.255 0.745 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.223 18.618 -3.027 18.902 hybrid contribution 0.805 -0.114 0.978 1.271 sum 2.027 18.504 -2.049 18.727 Atomic orbital electron populations 1.20022 0.87591 1.02332 1.02156 1.22024 0.96539 0.91035 1.01978 1.21277 0.89057 1.00439 1.21523 1.18021 0.87983 0.83322 1.03050 1.42610 1.08401 1.05530 1.71172 1.18180 0.89771 0.81133 0.77047 1.90752 1.26437 1.73946 1.48340 1.22957 0.98178 0.94358 1.04753 1.22347 0.97782 0.92783 0.92635 1.19281 0.92963 0.93429 0.97982 1.21333 0.91105 1.00936 0.98977 1.21024 0.99929 0.91170 0.96713 1.16143 0.88016 0.91392 1.07452 1.25740 0.93110 0.93480 0.93828 1.81281 1.10333 1.08920 1.08666 1.20993 0.90385 1.00613 0.97153 1.21200 0.99282 0.92194 0.98981 1.49513 1.06458 1.02080 1.55132 1.19629 0.77839 0.89746 0.98918 1.21382 1.13248 1.31797 0.91354 0.91646 1.24937 0.95712 0.94871 0.98184 1.69923 1.19221 1.32557 1.31071 0.86310 0.78349 0.78472 0.83652 1.19537 1.20534 1.20624 1.77336 0.86193 1.21855 1.25456 0.91317 0.91145 0.91559 0.82071 0.74545 0.84565 0.83895 0.84035 0.84532 0.84645 0.84154 0.92536 0.93794 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.00 0.38 -0.52 16 2 C 0.05 0.97 7.20 -82.46 -0.59 0.37 16 3 C -0.29 -5.78 9.58 -39.77 -0.38 -6.16 16 4 C 0.30 6.08 7.68 -152.78 -1.17 4.91 16 5 N -0.63 -10.35 5.41 -12.60 -0.07 -10.42 16 6 C 0.55 7.89 7.71 -12.95 -0.10 7.79 16 7 O -0.52 -8.71 13.36 5.19 0.07 -8.64 16 8 C -0.18 -1.75 9.41 -37.47 -0.35 -2.10 16 9 C -0.04 -0.29 9.45 -37.16 -0.35 -0.64 16 10 C -0.04 -0.23 5.87 -105.00 -0.62 -0.85 16 11 C -0.11 -0.64 9.37 -39.35 -0.37 -1.01 16 12 C -0.07 -0.40 9.71 -39.42 -0.38 -0.78 16 13 C -0.03 -0.17 5.74 -106.82 -0.61 -0.78 16 14 C 0.25 2.15 15.32 -22.48 -0.34 1.80 16 15 N -0.42 -4.60 18.54 41.84 0.78 -3.82 16 16 C -0.07 -0.37 9.71 -39.42 -0.38 -0.75 16 17 C -0.10 -0.52 9.75 -39.35 -0.38 -0.90 16 18 N -0.35 -7.91 3.62 -61.45 -0.22 -8.14 16 19 C 0.26 6.24 6.02 -5.19 -0.03 6.21 16 20 C -0.54 -14.15 9.39 -34.44 -0.32 -14.47 16 21 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 22 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -23.79 13.29 55.43 0.74 -23.05 16 24 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 N -0.28 -6.48 12.56 33.64 0.42 -6.05 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.16 3.08 5.82 -52.48 -0.31 2.78 16 33 H 0.42 6.19 7.97 -40.82 -0.33 5.87 16 34 H 0.14 0.97 6.06 -52.49 -0.32 0.65 16 35 H 0.14 1.16 7.52 -52.49 -0.39 0.77 16 36 H 0.14 0.68 6.15 -52.49 -0.32 0.36 16 37 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.04 1.02 7.52 -51.93 -0.39 0.63 16 42 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -32.84 379.35 -8.27 -41.11 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.56 Total: 4.34 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -6.12 Total: -6.26 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 1.64 Total: -51.49 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.07 Total: -8.64 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.84 -8.27 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058191300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.028 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds