Wall clock time and date at job start Tue Mar 31 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39724 * 125.77852 * 2 1 4 4 C 1.36170 * 107.85967 * 180.02562 * 3 2 1 5 5 N 1.39333 * 126.26193 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00638 * 0.03221 * 5 4 3 7 7 O 1.21530 * 119.99966 * 359.97438 * 6 5 4 8 8 C 1.48217 * 120.00366 * 179.97438 * 6 5 4 9 9 C 1.40314 * 119.24575 * 179.97438 * 8 6 5 10 10 C 1.36486 * 119.81733 * 179.97438 * 9 8 6 11 11 C 1.40766 * 118.24900 * 0.02562 * 10 9 8 12 12 C 1.40417 * 121.28018 * 180.02562 * 11 10 9 13 13 C 1.36139 * 119.65091 * 180.02562 * 12 11 10 14 14 C 1.39429 * 120.91215 * 359.91218 * 13 12 11 15 15 C 1.35995 * 121.08862 * 0.06224 * 14 13 12 16 16 C 1.40822 * 119.73090 * 359.97438 * 15 14 13 17 17 N 1.31895 * 119.24221 * 359.73014 * 8 6 5 18 18 N 1.35814 * 107.46815 * 0.02562 * 4 3 2 19 19 C 1.46493 * 126.09554 * 179.97438 * 18 4 3 20 20 C 1.50707 * 109.47162 * 269.99916 * 19 18 4 21 21 H 1.08003 * 119.99324 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00126 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99568 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00153 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47153 * 90.00365 * 24 22 20 26 26 H 1.48504 * 109.47123 * 210.00528 * 24 22 20 27 27 H 1.48496 * 109.47178 * 330.00202 * 24 22 20 28 28 N 1.30838 * 125.77755 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46888 * 269.98809 * 1 2 3 30 30 H 1.08996 * 109.46813 * 29.97898 * 1 2 3 31 31 H 1.08995 * 109.47176 * 149.98329 * 1 2 3 32 32 H 1.07996 * 126.06982 * 0.02562 * 3 2 1 33 33 H 0.97004 * 119.99765 * 180.02562 * 5 4 3 34 34 H 1.07996 * 120.08725 * 359.96306 * 9 8 6 35 35 H 1.08004 * 120.87300 * 179.97438 * 10 9 8 36 36 H 1.07995 * 120.17188 * 359.94852 * 12 11 10 37 37 H 1.07997 * 119.54205 * 179.97438 * 13 12 11 38 38 H 1.08006 * 119.45983 * 180.02562 * 14 13 12 39 39 H 1.07994 * 120.13862 * 180.02562 * 15 14 13 40 40 H 1.08995 * 109.47590 * 29.99240 * 19 18 4 41 41 H 1.08998 * 109.47783 * 149.99599 * 19 18 4 42 42 H 0.97001 * 119.99682 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6195 0.7146 -0.0006 5 7 4.7493 1.5300 -0.0013 6 6 4.6128 2.8708 -0.0008 7 8 3.5042 3.3687 -0.0002 8 6 5.8147 3.7381 -0.0009 9 6 5.6542 5.1321 -0.0010 10 6 6.7529 5.9418 -0.0006 11 6 8.0249 5.3388 -0.0007 12 6 9.1977 6.1109 0.0002 13 6 10.4108 5.4930 -0.0006 14 6 10.5062 4.1020 -0.0003 15 6 9.3923 3.3218 -0.0007 16 6 8.1187 3.9227 -0.0007 17 7 7.0107 3.1820 0.0038 18 7 3.6089 -0.6435 -0.0015 19 6 4.7857 -1.5158 -0.0029 20 6 5.1884 -1.8140 -1.4243 21 1 4.6236 -1.3958 -2.2444 22 6 6.2769 -2.6215 -1.6775 23 7 6.6284 -2.8812 -2.9179 24 14 7.2531 -3.3453 -0.2589 25 1 6.6777 -4.6616 0.1171 26 1 8.6684 -3.5234 -0.6719 27 1 7.1893 -2.4262 0.9057 28 7 2.2719 -1.0615 -0.0005 29 1 -0.3633 -0.0002 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.9874 2.1598 0.0004 33 1 5.6343 1.1326 -0.0020 34 1 4.6639 5.5630 -0.0015 35 1 6.6491 7.0168 -0.0010 36 1 9.1377 7.1892 0.0002 37 1 11.3118 6.0885 -0.0003 38 1 11.4807 3.6363 -0.0005 39 1 9.4839 2.2457 -0.0001 40 1 5.6080 -1.0176 0.5106 41 1 4.5482 -2.4475 0.5105 42 1 7.3945 -3.4489 -3.0961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058193114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:33 Heat of formation + Delta-G solvation = 106.373731 kcal Electronic energy + Delta-G solvation = -27534.726979 eV Core-core repulsion = 23674.768965 eV Total energy + Delta-G solvation = -3859.958014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34103 -40.71933 -39.18836 -37.10476 -34.90410 -33.91196 -33.62122 -32.12978 -31.10250 -30.33985 -29.47072 -28.32610 -26.28808 -25.46897 -24.00371 -22.58105 -22.39077 -21.74374 -19.87719 -19.60396 -18.30580 -17.69164 -17.40658 -17.15069 -16.54226 -15.61220 -15.51984 -15.13855 -14.80672 -14.67071 -14.55572 -14.23270 -14.09533 -13.77717 -13.56936 -13.37948 -13.10887 -12.73477 -12.58467 -12.32381 -11.97739 -11.95572 -11.87277 -11.83976 -11.76201 -11.11651 -10.88800 -10.80951 -10.49497 -10.35192 -10.22193 -9.80448 -9.72538 -9.59965 -9.09361 -8.81373 -8.58955 -7.93535 -7.49873 -6.29037 -4.33030 -0.08480 0.39997 1.64624 2.06161 2.61228 2.70746 3.13047 3.18651 3.18843 3.21121 3.55344 3.59226 3.83903 3.90562 4.18451 4.24625 4.43384 4.50281 4.60015 4.82123 4.84830 4.97474 5.04087 5.15574 5.30500 5.46579 5.55684 5.63510 5.71199 5.76155 6.00901 6.02199 6.07242 6.10604 6.14924 6.17775 6.21754 6.31418 6.38229 6.50130 6.61843 6.75616 7.23995 7.37009 7.46342 7.56544 7.75169 8.14370 8.30418 8.56920 8.76933 9.25727 10.83312 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.008900 B = 0.004113 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.150723 B = 6806.261663 C = 9568.243387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 C -0.288 4.288 4 C 0.302 3.698 5 N -0.618 5.618 6 C 0.576 3.424 7 O -0.504 6.504 8 C 0.124 3.876 9 C -0.120 4.120 10 C -0.063 4.063 11 C -0.086 4.086 12 C -0.104 4.104 13 C -0.105 4.105 14 C -0.106 4.106 15 C -0.080 4.080 16 C 0.125 3.875 17 N -0.437 5.437 18 N -0.343 5.343 19 C 0.229 3.771 20 C -0.544 4.544 21 H 0.081 0.919 22 C 0.081 3.919 23 N -0.883 5.883 24 Si 0.872 3.128 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.265 1.265 28 N -0.279 5.279 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.164 0.836 33 H 0.426 0.574 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.041 0.959 41 H 0.051 0.949 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 19.391 8.015 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.320 4.320 4 C 0.080 3.920 5 N -0.264 5.264 6 C 0.361 3.639 7 O -0.377 6.377 8 C -0.030 4.030 9 C -0.141 4.141 10 C -0.089 4.089 11 C -0.088 4.088 12 C -0.123 4.123 13 C -0.123 4.123 14 C -0.126 4.126 15 C -0.098 4.098 16 C 0.002 3.998 17 N -0.149 5.149 18 N -0.129 5.129 19 C 0.110 3.890 20 C -0.582 4.582 21 H 0.100 0.900 22 C -0.123 4.123 23 N -0.520 5.520 24 Si 0.698 3.302 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.189 1.189 28 N -0.104 5.104 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.181 0.819 33 H 0.264 0.736 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.160 0.840 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.065 17.366 7.899 19.739 hybrid contribution 1.295 0.926 0.421 1.646 sum 6.360 18.291 8.320 21.077 Atomic orbital electron populations 1.20035 0.87354 1.02647 1.02097 1.22037 0.96614 0.90889 1.01585 1.21287 0.88913 1.00571 1.21236 1.17993 0.87913 0.83120 1.02950 1.42504 1.08962 1.05218 1.69765 1.17730 0.87857 0.81092 0.77240 1.90723 1.24825 1.73962 1.48189 1.21076 0.91021 0.92145 0.98804 1.21714 1.01269 0.92492 0.98622 1.21449 0.90744 1.00677 0.95996 1.18996 0.94881 0.94102 1.00833 1.20984 0.91359 0.99778 1.00167 1.21023 0.97944 0.94871 0.98508 1.20961 0.98926 0.93712 0.99028 1.21004 0.89697 1.01291 0.97851 1.18841 0.92457 0.89275 0.99257 1.67857 0.97711 1.39865 1.09465 1.49060 1.06145 1.01865 1.55815 1.19967 0.79311 0.89939 0.99777 1.21185 1.14316 1.32461 0.90273 0.90048 1.24803 0.96530 0.95237 0.95775 1.69877 1.26922 1.36615 1.18595 0.86913 0.80029 0.80593 0.82632 1.19504 1.20469 1.18924 1.77345 0.85809 1.21789 1.25455 0.91300 0.90985 0.91368 0.81855 0.73595 0.82853 0.83493 0.84986 0.85321 0.84943 0.83986 0.94175 0.93116 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.09 7.20 -82.46 -0.59 0.49 16 3 C -0.29 -5.94 9.58 -39.77 -0.38 -6.32 16 4 C 0.30 6.57 7.68 -152.78 -1.17 5.39 16 5 N -0.62 -11.88 5.40 -12.10 -0.07 -11.95 16 6 C 0.58 9.99 7.77 -12.16 -0.09 9.90 16 7 O -0.50 -9.21 13.41 5.34 0.07 -9.14 16 8 C 0.12 1.82 6.75 -82.96 -0.56 1.26 16 9 C -0.12 -1.38 9.54 -39.43 -0.38 -1.76 16 10 C -0.06 -0.58 9.88 -39.26 -0.39 -0.97 16 11 C -0.09 -0.91 5.75 -106.71 -0.61 -1.52 16 12 C -0.10 -0.82 9.77 -39.52 -0.39 -1.21 16 13 C -0.11 -0.77 9.96 -39.89 -0.40 -1.17 16 14 C -0.11 -0.90 9.94 -39.94 -0.40 -1.30 16 15 C -0.08 -0.90 9.99 -39.41 -0.39 -1.29 16 16 C 0.13 1.63 6.61 -84.85 -0.56 1.07 16 17 N -0.44 -6.59 9.47 -7.54 -0.07 -6.66 16 18 N -0.34 -8.15 3.62 -61.46 -0.22 -8.37 16 19 C 0.23 5.58 5.09 -5.19 -0.03 5.55 16 20 C -0.54 -15.32 9.94 -34.44 -0.34 -15.66 16 21 H 0.08 2.61 8.06 -52.48 -0.42 2.19 16 22 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 23 N -0.88 -26.21 13.96 55.43 0.77 -25.43 16 24 Si 0.87 20.10 27.47 -169.99 -4.67 15.43 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 28 N -0.28 -6.50 12.56 33.64 0.42 -6.08 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.16 3.20 5.83 -52.49 -0.31 2.89 16 33 H 0.43 8.04 7.29 -40.82 -0.30 7.74 16 34 H 0.15 1.55 7.60 -52.49 -0.40 1.15 16 35 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 39 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.04 0.91 6.58 -51.93 -0.34 0.57 16 41 H 0.05 1.22 7.57 -51.93 -0.39 0.83 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -34.06 363.94 -9.39 -43.45 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.71 Total: 9.19 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -6.40 Total: -5.92 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.84 Total: -58.50 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.06 -9.39 -43.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058193114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.822 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds