Wall clock time and date at job start Tue Mar 31 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39733 * 125.77946 * 2 1 4 4 C 1.36147 * 107.85670 * 180.14109 * 3 2 1 5 5 N 1.39387 * 126.25709 * 179.84417 * 4 3 2 6 6 C 1.34774 * 120.00564 * 359.69130 * 5 4 3 7 7 O 1.21598 * 119.99611 * 0.02562 * 6 5 4 8 8 C 1.47601 * 120.00409 * 179.97438 * 6 5 4 9 9 C 1.39719 * 120.13345 * 0.23938 * 8 6 5 10 10 C 1.37768 * 119.89510 * 180.23045 * 9 8 6 11 11 C 1.38729 * 120.15662 * 359.78366 * 10 9 8 12 12 F 1.35099 * 119.86727 * 179.97438 * 11 10 9 13 13 C 1.38564 * 120.26409 * 359.97438 * 11 10 9 14 14 C 1.38033 * 120.10788 * 0.02562 * 13 11 10 15 15 Cl 1.73599 * 120.07718 * 179.97438 * 14 13 11 16 16 N 1.35805 * 107.47597 * 359.58678 * 4 3 2 17 17 C 1.46503 * 126.09151 * 180.23927 * 16 4 3 18 18 C 1.50699 * 109.46827 * 90.00204 * 17 16 4 19 19 H 1.08008 * 120.00427 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99970 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99980 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99688 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47196 * 90.00779 * 22 20 18 24 24 H 1.48500 * 109.46974 * 210.00266 * 22 20 18 25 25 H 1.48499 * 109.47129 * 330.00195 * 22 20 18 26 26 N 1.30838 * 125.78009 * 179.66772 * 2 1 3 27 27 H 1.08998 * 109.47139 * 270.30109 * 1 2 3 28 28 H 1.08989 * 109.46935 * 30.30384 * 1 2 3 29 29 H 1.09001 * 109.47047 * 150.29912 * 1 2 3 30 30 H 1.07993 * 126.06736 * 0.02562 * 3 2 1 31 31 H 0.97006 * 119.99667 * 179.69473 * 5 4 3 32 32 H 1.08004 * 120.04866 * 359.96849 * 9 8 6 33 33 H 1.08004 * 119.92456 * 179.76449 * 10 9 8 34 34 H 1.07997 * 119.94712 * 180.02562 * 13 11 10 35 35 H 1.09001 * 109.46610 * 209.99085 * 17 16 4 36 36 H 1.08995 * 109.47392 * 329.99966 * 17 16 4 37 37 H 0.97004 * 119.99737 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6194 0.7146 -0.0032 5 7 4.7496 1.5304 -0.0073 6 6 4.6131 2.8712 -0.0148 7 8 3.5038 3.3693 -0.0174 8 6 5.8099 3.7350 -0.0186 9 6 7.0858 3.1656 -0.0195 10 6 8.1996 3.9765 -0.0183 11 6 8.0570 5.3565 -0.0206 12 9 9.1532 6.1461 -0.0189 13 6 6.7947 5.9281 -0.0248 14 6 5.6714 5.1260 -0.0260 15 17 4.0904 5.8429 -0.0305 16 7 3.6088 -0.6433 0.0042 17 6 4.7859 -1.5155 0.0089 18 6 5.1895 -1.8068 1.4313 19 1 4.6259 -1.3842 2.2500 20 6 6.2790 -2.6121 1.6877 21 7 6.6315 -2.8659 2.9290 22 14 7.2543 -3.3424 0.2718 23 1 8.3460 -2.4109 -0.1098 24 1 7.8369 -4.6425 0.6907 25 1 6.3553 -3.5545 -0.8910 26 7 2.2720 -1.0614 0.0062 27 1 -0.3633 0.0054 1.0276 28 1 -0.3633 0.8872 -0.5185 29 1 -0.3633 -0.8927 -0.5092 30 1 1.9875 2.1598 0.0004 31 1 5.6345 1.1330 -0.0049 32 1 7.1987 2.0915 -0.0170 33 1 9.1861 3.5369 -0.0152 34 1 6.6897 7.0029 -0.0270 35 1 4.5479 -2.4497 -0.4997 36 1 5.6077 -1.0196 -0.5076 37 1 7.3978 -3.4327 3.1093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058202032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:09 Heat of formation + Delta-G solvation = 32.295604 kcal Electronic energy + Delta-G solvation = -25865.757284 eV Core-core repulsion = 21778.975184 eV Total energy + Delta-G solvation = -4086.782100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.073 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.40989 -41.08611 -39.97993 -38.35294 -36.65598 -34.91611 -33.82904 -32.24895 -31.59954 -31.17481 -29.50787 -28.23975 -26.34442 -24.44509 -23.54677 -22.53848 -21.54381 -19.96683 -19.57873 -18.34627 -17.46584 -17.23669 -17.10395 -16.32623 -16.12970 -15.55571 -15.36077 -15.14654 -14.69927 -14.47101 -14.09216 -13.94733 -13.84772 -13.36399 -13.21937 -13.08824 -12.75566 -12.63144 -12.36223 -11.94994 -11.87420 -11.77849 -11.63867 -11.32858 -11.17907 -10.87537 -10.55297 -10.27801 -9.93805 -9.79832 -9.48653 -9.48177 -9.15580 -8.91066 -7.99156 -7.54043 -6.37752 -4.42537 0.16290 0.59285 1.77104 2.19098 2.58054 2.80655 3.01378 3.13045 3.14206 3.28977 3.57926 3.59495 3.70008 4.09596 4.14432 4.32846 4.42943 4.67132 4.87956 4.92498 5.23470 5.26785 5.39580 5.52041 5.58433 5.61506 5.98313 6.00304 6.05824 6.15043 6.19182 6.24976 6.31845 6.59437 6.70281 7.15458 7.37767 7.45667 7.69228 8.07817 8.22655 8.51809 8.68994 9.16598 10.74385 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.009331 B = 0.004327 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.087900 B = 6469.691282 C = 9080.738171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.286 4.286 4 C 0.303 3.697 5 N -0.634 5.634 6 C 0.561 3.439 7 O -0.486 6.486 8 C -0.134 4.134 9 C -0.042 4.042 10 C -0.154 4.154 11 C 0.139 3.861 12 F -0.127 7.127 13 C -0.159 4.159 14 C 0.044 3.956 15 Cl -0.013 7.013 16 N -0.345 5.345 17 C 0.230 3.770 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.081 3.919 21 N -0.882 5.882 22 Si 0.870 3.130 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.263 1.263 26 N -0.279 5.279 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.165 0.835 31 H 0.412 0.588 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 16.484 -8.078 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.317 4.317 4 C 0.082 3.918 5 N -0.281 5.281 6 C 0.347 3.653 7 O -0.359 6.359 8 C -0.138 4.138 9 C -0.061 4.061 10 C -0.173 4.173 11 C 0.119 3.881 12 F -0.106 7.106 13 C -0.178 4.178 14 C 0.015 3.985 15 Cl 0.016 6.984 16 N -0.131 5.131 17 C 0.111 3.889 18 C -0.585 4.585 19 H 0.100 0.900 20 C -0.124 4.124 21 N -0.518 5.518 22 Si 0.696 3.304 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.187 1.187 26 N -0.104 5.104 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.182 0.818 31 H 0.250 0.750 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.324 15.500 -7.950 17.470 hybrid contribution 1.537 0.234 -0.414 1.609 sum 2.861 15.734 -8.363 18.047 Atomic orbital electron populations 1.20040 0.87393 1.02405 1.02353 1.22048 0.96611 0.90922 1.01475 1.21298 0.88893 1.00604 1.20952 1.17932 0.87853 0.82988 1.03021 1.42563 1.08304 1.05338 1.71920 1.17745 0.88863 0.80950 0.77696 1.90820 1.25392 1.73234 1.46482 1.19652 0.93872 0.92283 1.07983 1.21282 0.90049 1.00996 0.93731 1.21210 1.01049 0.91366 1.03688 1.17696 0.82542 0.88493 0.99371 1.91556 1.51778 1.73933 1.93315 1.20954 0.89515 1.01612 1.05744 1.20657 0.88503 0.91307 0.98001 1.98447 1.21808 1.82371 1.95727 1.49044 1.06158 1.01821 1.56068 1.19930 0.79250 0.90038 0.99674 1.21204 1.14290 1.32688 0.90308 0.89999 1.24821 0.96634 0.95204 0.95748 1.69871 1.26799 1.36619 1.18522 0.86949 0.80757 0.79871 0.82869 1.19655 1.20302 1.18714 1.77354 0.85767 1.21765 1.25551 0.91125 0.91032 0.91500 0.81770 0.75014 0.83244 0.83067 0.82872 0.92670 0.94888 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.53 16 2 C 0.05 1.06 7.20 -82.46 -0.59 0.47 16 3 C -0.29 -5.61 9.58 -39.77 -0.38 -6.00 16 4 C 0.30 6.11 7.68 -152.74 -1.17 4.94 16 5 N -0.63 -10.50 5.36 -12.27 -0.07 -10.57 16 6 C 0.56 8.62 7.72 -12.44 -0.10 8.53 16 7 O -0.49 -8.35 11.09 5.28 0.06 -8.29 16 8 C -0.13 -1.63 5.88 -104.94 -0.62 -2.25 16 9 C -0.04 -0.41 9.53 -39.20 -0.37 -0.79 16 10 C -0.15 -1.33 10.01 -39.57 -0.40 -1.73 16 11 C 0.14 1.27 7.31 -39.28 -0.29 0.98 16 12 F -0.13 -1.18 17.26 2.25 0.04 -1.14 16 13 C -0.16 -1.47 9.79 -39.54 -0.39 -1.85 16 14 C 0.04 0.50 6.35 -39.08 -0.25 0.25 16 15 Cl -0.01 -0.16 26.02 -51.86 -1.35 -1.51 16 16 N -0.35 -7.72 3.62 -61.45 -0.22 -7.94 16 17 C 0.23 5.23 5.09 -5.19 -0.03 5.21 16 18 C -0.55 -14.55 9.94 -34.44 -0.34 -14.89 16 19 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 20 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 21 N -0.88 -25.11 13.96 55.43 0.77 -24.33 16 22 Si 0.87 18.91 27.47 -169.99 -4.67 14.24 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 26 N -0.28 -6.28 12.56 33.64 0.42 -5.86 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.17 3.11 5.83 -52.49 -0.31 2.81 16 31 H 0.41 6.05 6.02 -40.82 -0.25 5.80 16 32 H 0.15 1.30 6.40 -52.48 -0.34 0.96 16 33 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.06 1.28 7.20 -51.93 -0.37 0.91 16 36 H 0.03 0.66 6.95 -51.93 -0.36 0.30 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -31.72 339.39 -7.87 -39.59 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.33 Total: 6.34 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -4.64 Total: -5.63 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.91 Total: -48.70 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.06 Total: -8.29 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.67 Total: 14.24 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.35 Total: -1.51 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.72 -7.87 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058202032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.887 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds