Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34767 * 120.00342 * 2 1 4 4 O 1.21285 * 120.00185 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00398 * 179.97438 * 3 2 1 6 6 O 1.42896 * 109.47448 * 180.02562 * 5 3 2 7 7 C 1.35798 * 116.99977 * 179.97438 * 6 5 3 8 8 C 1.38836 * 119.93257 * 359.97438 * 7 6 5 9 9 C 1.37782 * 120.15110 * 179.97438 * 8 7 6 10 10 C 1.39705 * 120.00795 * 0.02562 * 9 8 7 11 11 C 1.47610 * 120.07308 * 179.97438 * 10 9 8 12 12 O 1.21584 * 119.99705 * 200.55885 * 11 10 9 13 13 N 1.34774 * 119.99904 * 20.55334 * 11 10 9 14 14 C 1.46502 * 120.00057 * 7.04812 * 13 11 10 15 15 C 1.46498 * 119.99760 * 187.04202 * 13 11 10 16 16 C 1.50705 * 109.47131 * 270.00350 * 15 13 11 17 17 H 1.08002 * 120.00026 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99905 * 180.02562 * 16 15 13 19 19 N 1.31516 * 120.00351 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99965 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47122 * 59.99552 * 20 18 16 22 22 H 1.48501 * 109.47025 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46764 * 299.99690 * 20 18 16 24 24 C 1.39732 * 119.85253 * 0.25363 * 10 9 8 25 25 C 1.38140 * 119.85258 * 359.44734 * 24 10 9 26 26 O 1.36002 * 120.00304 * 180.29562 * 25 24 10 27 27 C 1.42904 * 117.00117 * 0.27726 * 26 25 24 28 28 H 1.08999 * 109.46913 * 59.99666 * 1 2 3 29 29 H 1.08997 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47195 * 299.99777 * 1 2 3 31 31 H 0.97001 * 119.99636 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47130 * 60.00239 * 5 3 2 33 33 H 1.09003 * 109.47260 * 299.99998 * 5 3 2 34 34 H 1.07999 * 119.92211 * 359.96035 * 8 7 6 35 35 H 1.08009 * 119.99701 * 180.02562 * 9 8 7 36 36 H 1.09006 * 109.46804 * 267.56669 * 14 13 11 37 37 H 1.08998 * 109.47572 * 27.56542 * 14 13 11 38 38 H 1.09000 * 109.47175 * 147.57165 * 14 13 11 39 39 H 1.09004 * 109.47219 * 150.00324 * 15 13 11 40 40 H 1.08996 * 109.47333 * 30.00191 * 15 13 11 41 41 H 0.96998 * 120.00234 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.07213 * 179.70265 * 24 10 9 43 43 H 1.09000 * 109.46604 * 60.00616 * 27 26 25 44 44 H 1.09001 * 109.47032 * 179.97438 * 27 26 25 45 45 H 1.08997 * 109.47277 * 300.00775 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 8 4.1223 2.5143 0.0011 7 6 5.4686 2.6922 0.0022 8 6 6.3130 1.5901 0.0033 9 6 7.6796 1.7653 0.0039 10 6 8.2187 3.0542 0.0039 11 6 9.6826 3.2436 0.0051 12 8 10.1586 4.2995 0.3749 13 7 10.4915 2.2460 -0.4036 14 6 9.9186 1.0334 -0.9932 15 6 11.9436 2.3744 -0.2584 16 6 12.5183 3.0093 -1.4986 17 1 11.8670 3.2887 -2.3135 18 6 13.8756 3.2324 -1.5931 19 7 14.6687 2.8916 -0.6010 20 14 14.5878 4.0199 -3.1300 21 1 13.9889 5.3655 -3.3196 22 1 16.0598 4.1500 -2.9828 23 1 14.2808 3.1708 -4.3090 24 6 7.3691 4.1635 0.0086 25 6 5.9999 3.9810 0.0018 26 8 5.1701 5.0586 0.0003 27 6 5.7832 6.3495 0.0000 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 4.0096 0.6531 -0.8892 33 1 4.0089 0.6535 0.8908 34 1 5.8976 0.5932 0.0040 35 1 8.3342 0.9062 0.0044 36 1 9.7611 0.2893 -0.2123 37 1 8.9653 1.2735 -1.4638 38 1 10.6033 0.6350 -1.7419 39 1 12.3835 1.3870 -0.1185 40 1 12.1685 2.9982 0.6066 41 1 15.6236 3.0489 -0.6674 42 1 7.7821 5.1614 0.0135 43 1 6.4039 6.4566 -0.8896 44 1 5.0107 7.1185 -0.0017 45 1 6.4025 6.4578 0.8903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058215892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = -83.033404 kcal Electronic energy + Delta-G solvation = -28595.595452 eV Core-core repulsion = 24387.822457 eV Total energy + Delta-G solvation = -4207.772995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92182 -40.02128 -39.01841 -38.38320 -36.42603 -35.04352 -35.00153 -32.68753 -30.89382 -30.45416 -29.44457 -28.00681 -26.94665 -26.36368 -26.10695 -23.61690 -22.40769 -22.08116 -20.93566 -19.52607 -18.45221 -17.86730 -17.56865 -16.79400 -16.55724 -16.49929 -16.06887 -15.73667 -15.59842 -15.26318 -14.95121 -14.84444 -14.52327 -14.36513 -14.31475 -13.52334 -13.38182 -13.31190 -12.91879 -12.78006 -12.62523 -12.49391 -12.34215 -12.17920 -11.91356 -11.39479 -11.33509 -11.25897 -11.08062 -10.93498 -10.69818 -10.50593 -10.25574 -10.16505 -9.66449 -9.65102 -9.05599 -8.80663 -8.44113 -7.87840 -7.68569 -6.05094 -4.09647 0.99822 1.30010 2.15464 2.19785 3.20992 3.24745 3.31962 3.32231 3.36302 3.39974 3.83138 4.09361 4.17998 4.44360 4.53248 4.63086 4.69768 4.75773 4.89221 4.90957 5.04132 5.12248 5.22659 5.25001 5.27799 5.29691 5.33175 5.53849 5.57164 5.60443 5.76036 5.83622 5.98988 6.08614 6.18735 6.37922 6.49755 6.79305 6.96407 7.03607 7.39179 7.45209 7.49285 7.73723 7.90829 8.21263 8.34263 8.87418 9.03114 9.55150 11.02956 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.002337 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.809055 B =11976.531041 C =12830.506674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.735 5.735 3 C 0.514 3.486 4 O -0.510 6.510 5 C 0.039 3.961 6 O -0.278 6.278 7 C 0.111 3.889 8 C -0.186 4.186 9 C -0.106 4.106 10 C -0.115 4.115 11 C 0.546 3.454 12 O -0.534 6.534 13 N -0.594 5.594 14 C 0.071 3.929 15 C 0.246 3.754 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.117 4.117 25 C 0.094 3.906 26 O -0.305 6.305 27 C 0.024 3.976 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.404 0.596 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.044 0.956 41 H 0.264 0.736 42 H 0.148 0.852 43 H 0.057 0.943 44 H 0.100 0.900 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.304 -9.818 1.297 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.389 5.389 3 C 0.298 3.702 4 O -0.383 6.383 5 C -0.040 4.040 6 O -0.190 6.190 7 C 0.065 3.935 8 C -0.205 4.205 9 C -0.124 4.124 10 C -0.118 4.118 11 C 0.333 3.667 12 O -0.412 6.412 13 N -0.326 5.326 14 C -0.072 4.072 15 C 0.128 3.872 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.137 4.137 25 C 0.048 3.952 26 O -0.219 6.219 27 C -0.071 4.071 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.237 0.763 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.165 0.835 43 H 0.076 0.924 44 H 0.118 0.882 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.636 -8.318 1.549 26.996 hybrid contribution 1.022 -0.197 -0.888 1.368 sum -24.614 -8.515 0.661 26.054 Atomic orbital electron populations 1.21564 0.78758 1.02473 1.02662 1.45609 1.08046 1.08265 1.77005 1.20137 0.89044 0.84174 0.76810 1.90788 1.69820 1.31018 1.46711 1.22442 0.92424 0.85122 1.04028 1.86203 1.18549 1.25391 1.88903 1.18407 0.82200 0.91501 1.01397 1.20971 0.93872 0.97043 1.08582 1.22076 0.94769 0.97938 0.97618 1.19983 0.94406 0.93199 1.04251 1.18045 0.85264 0.84244 0.79155 1.90757 1.76421 1.25528 1.48541 1.48040 1.09463 1.16083 1.58984 1.22227 0.99625 0.87556 0.97822 1.19330 0.71998 0.97696 0.98222 1.21381 0.92335 1.40606 1.02104 0.92449 1.24936 0.96913 0.95575 0.96718 1.69917 1.04513 1.47647 1.31369 0.86547 0.77777 0.80041 0.82987 1.20165 1.21181 1.20253 1.21196 0.90195 1.00644 1.01659 1.18033 0.88637 0.85502 1.02999 1.86189 1.33497 1.13045 1.89121 1.23115 0.99864 0.82339 1.01829 0.92001 0.90312 0.91997 0.76257 0.88758 0.88785 0.84489 0.82449 0.93094 0.90969 0.90787 0.94735 0.93837 0.92649 0.83467 0.92430 0.88197 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 10.70 59.85 0.64 1.05 16 2 N -0.73 -3.88 5.71 -67.08 -0.38 -4.26 16 3 C 0.51 4.89 7.91 -10.99 -0.09 4.81 16 4 O -0.51 -7.56 16.50 -14.36 -0.24 -7.80 16 5 C 0.04 0.31 5.21 36.00 0.19 0.50 16 6 O -0.28 -3.70 9.44 -46.79 -0.44 -4.15 16 7 C 0.11 1.49 6.71 -38.93 -0.26 1.23 16 8 C -0.19 -2.03 9.01 -39.53 -0.36 -2.39 16 9 C -0.11 -1.37 7.61 -39.20 -0.30 -1.67 16 10 C -0.11 -1.94 5.56 -104.97 -0.58 -2.52 16 11 C 0.55 11.77 7.50 -12.44 -0.09 11.68 16 12 O -0.53 -13.78 16.18 5.29 0.09 -13.69 16 13 N -0.59 -12.60 2.86 -184.16 -0.53 -13.13 16 14 C 0.07 1.08 8.64 59.85 0.52 1.60 16 15 C 0.25 6.40 5.12 -5.19 -0.03 6.37 16 16 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 17 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 20 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.12 -1.89 8.57 -39.06 -0.33 -2.23 16 25 C 0.09 1.42 6.69 -39.18 -0.26 1.16 16 26 O -0.30 -4.58 10.28 -34.40 -0.35 -4.93 16 27 C 0.02 0.27 9.81 101.05 0.99 1.26 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.40 0.65 8.83 -40.82 -0.36 0.29 16 32 H 0.09 0.49 7.66 -51.93 -0.40 0.09 16 33 H 0.09 0.49 7.65 -51.93 -0.40 0.10 16 34 H 0.14 0.92 6.27 -52.49 -0.33 0.59 16 35 H 0.16 1.76 4.01 -52.48 -0.21 1.55 16 36 H 0.05 0.62 6.91 -51.93 -0.36 0.26 16 37 H 0.07 0.95 5.38 -51.93 -0.28 0.67 16 38 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 39 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.04 1.27 7.53 -51.93 -0.39 0.88 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.15 2.39 6.01 -52.49 -0.32 2.07 16 43 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.63 7.65 -51.93 -0.40 0.24 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -39.62 379.42 -6.72 -46.33 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.91 Total: -2.49 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -0.39 Total: 7.25 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.17 Total: -43.13 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.95 Total: -30.56 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.62 -6.72 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058215892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.699 kcal (2) G-P(sol) polarization free energy of solvation -39.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds