Wall clock time and date at job start Tue Mar 31 2020 05:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46494 * 120.00138 * 2 1 4 4 C 1.50700 * 109.47352 * 270.00222 * 3 2 1 5 5 H 1.08011 * 119.99809 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00460 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99750 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00242 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47251 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46904 * 120.00221 * 8 6 4 11 11 H 1.48505 * 109.47208 * 240.00361 * 8 6 4 12 12 C 1.34774 * 119.99785 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00011 * 180.02562 * 12 2 1 14 14 C 1.50705 * 120.00042 * 359.97438 * 12 2 1 15 15 H 1.09003 * 110.88049 * 56.19918 * 14 12 2 16 16 C 1.54626 * 110.97182 * 292.38186 * 14 12 2 17 17 C 1.51283 * 104.25877 * 266.46197 * 16 14 12 18 18 O 1.21290 * 124.94588 * 164.01591 * 17 16 14 19 19 N 1.34418 * 110.11123 * 344.14661 * 17 16 14 20 20 C 1.39975 * 124.34623 * 179.43654 * 19 17 16 21 21 C 1.38861 * 120.05740 * 173.91194 * 20 19 17 22 22 C 1.38109 * 119.94686 * 179.97438 * 21 20 19 23 23 C 1.38386 * 120.05189 * 0.02562 * 22 21 20 24 24 Cl 1.73609 * 119.94245 * 179.97438 * 23 22 21 25 25 C 1.38387 * 120.11815 * 0.25664 * 23 22 21 26 26 C 1.38109 * 120.05386 * 359.44676 * 25 23 22 27 27 C 1.46756 * 111.30317 * 359.17101 * 19 17 16 28 28 H 1.09000 * 109.47057 * 269.99915 * 1 2 3 29 29 H 1.08993 * 109.46766 * 30.00253 * 1 2 3 30 30 H 1.09000 * 109.46695 * 149.99835 * 1 2 3 31 31 H 1.09005 * 109.47182 * 30.00131 * 3 2 1 32 32 H 1.08998 * 109.47549 * 150.00303 * 3 2 1 33 33 H 0.96996 * 120.00019 * 180.02562 * 7 6 4 34 34 H 1.09001 * 110.48542 * 25.36139 * 16 14 12 35 35 H 1.09000 * 110.48239 * 148.00196 * 16 14 12 36 36 H 1.08002 * 120.02988 * 359.95185 * 21 20 19 37 37 H 1.08002 * 119.97804 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.97253 * 179.69775 * 25 23 22 39 39 H 1.07999 * 120.02556 * 180.25823 * 26 25 23 40 40 H 1.08997 * 110.24864 * 136.28466 * 27 19 17 41 41 H 1.08999 * 110.24896 * 258.19497 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2418 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.8609 2.4164 -4.3673 10 1 2.7999 4.7372 -3.6679 11 1 4.9006 3.5256 -3.6667 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 1 0.7001 -2.5253 -0.8466 16 6 0.6330 -2.6770 1.3348 17 6 1.5923 -3.4824 2.1832 18 8 1.5079 -3.6217 3.3852 19 7 2.5533 -4.0188 1.4116 20 6 3.6022 -4.8110 1.8930 21 6 4.4750 -5.4244 1.0041 22 6 5.5094 -6.2051 1.4815 23 6 5.6760 -6.3768 2.8445 24 17 6.9768 -7.3593 3.4416 25 6 4.8041 -5.7713 3.7324 26 6 3.7718 -4.9846 3.2602 27 6 2.3582 -3.6723 -0.0010 28 1 -0.3633 0.0000 1.0277 29 1 -0.3632 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6085 2.0284 0.5139 32 1 3.1500 1.1384 0.5138 33 1 4.0296 4.4443 -0.8503 34 1 0.4192 -1.7163 1.8033 35 1 -0.2881 -3.2365 1.1717 36 1 4.3449 -5.2914 -0.0598 37 1 6.1883 -6.6828 0.7906 38 1 4.9334 -5.9108 4.7955 39 1 3.0941 -4.5090 3.9537 40 1 3.3078 -3.3879 -0.4544 41 1 1.9211 -4.5136 -0.5389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058216783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:37 Heat of formation + Delta-G solvation = -37.265664 kcal Electronic energy + Delta-G solvation = -26411.393038 eV Core-core repulsion = 22510.480751 eV Total energy + Delta-G solvation = -3900.912286 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.47792 -39.36224 -38.57230 -36.74169 -36.30022 -35.01425 -33.39206 -32.50522 -31.26420 -29.30852 -27.96565 -27.81134 -26.06393 -24.32359 -23.34082 -22.74713 -21.49945 -20.04853 -18.74312 -17.94123 -17.24709 -16.93822 -16.57980 -15.93091 -15.74648 -15.39002 -15.03787 -14.75618 -14.45806 -14.18151 -13.88366 -13.78511 -13.60707 -13.41914 -13.15450 -13.03933 -12.48699 -12.40146 -12.11019 -12.00731 -11.88063 -11.74092 -11.60857 -11.56864 -11.26959 -11.01967 -10.94180 -10.66932 -10.24634 -10.13376 -9.82745 -9.70557 -9.23271 -9.12070 -8.51317 -8.02282 -7.80764 -6.11848 -4.17369 0.91019 1.13129 2.01646 2.35348 2.62168 3.10597 3.24530 3.32569 3.35311 3.55295 3.65359 3.99258 4.18479 4.37320 4.57786 4.63797 4.71419 4.75960 5.03934 5.13314 5.15973 5.17988 5.23066 5.30260 5.39127 5.51937 5.56901 5.60015 5.77392 5.79113 5.82715 5.97821 6.10131 6.11941 6.24731 6.76575 6.85967 6.91252 7.32951 7.39297 7.83224 7.83790 8.13266 8.22760 8.76295 8.91566 9.48056 10.96381 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.002764 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.508273 B =10129.087504 C =11192.690304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.508 3.492 13 O -0.531 6.531 14 C -0.125 4.125 15 H 0.126 0.874 16 C -0.144 4.144 17 C 0.522 3.478 18 O -0.510 6.510 19 N -0.552 5.552 20 C 0.182 3.818 21 C -0.144 4.144 22 C -0.081 4.081 23 C -0.065 4.065 24 Cl -0.079 7.079 25 C -0.081 4.081 26 C -0.147 4.147 27 C 0.108 3.892 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.163 0.837 40 H 0.108 0.892 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -19.782 3.340 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.328 5.328 3 C 0.125 3.875 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.293 3.707 13 O -0.408 6.408 14 C -0.147 4.147 15 H 0.144 0.856 16 C -0.184 4.184 17 C 0.311 3.689 18 O -0.386 6.386 19 N -0.274 5.274 20 C 0.088 3.912 21 C -0.165 4.165 22 C -0.100 4.100 23 C -0.092 4.092 24 Cl -0.050 7.050 25 C -0.100 4.100 26 C -0.167 4.167 27 C -0.014 4.014 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.180 0.820 40 H 0.126 0.874 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.111 -19.701 4.069 20.533 hybrid contribution 0.277 0.450 -1.098 1.218 sum -3.835 -19.251 2.971 19.853 Atomic orbital electron populations 1.21762 0.81284 1.02900 1.00588 1.48122 1.06279 1.07685 1.70678 1.19347 0.92579 0.77819 0.97714 1.21421 1.36770 1.06353 0.92111 0.92358 1.24951 0.95294 0.96391 0.97504 1.69941 1.38206 1.14305 1.30732 0.86431 0.78139 0.78349 0.84418 1.19792 1.20931 1.20838 1.19858 0.87953 0.84685 0.78194 1.90705 1.13554 1.86714 1.49846 1.22390 0.98193 0.94463 0.99687 0.85587 1.22426 0.98547 1.02799 0.94638 1.21041 0.81668 0.78861 0.87291 1.90616 1.74138 1.60509 1.13308 1.45785 1.24298 1.47474 1.09828 1.17845 0.88370 0.92011 0.93004 1.20754 0.96027 0.99957 0.99719 1.20796 0.97636 0.98160 0.93436 1.20855 0.93753 1.00702 0.93932 1.98354 1.48709 1.69422 1.88518 1.20927 0.93357 0.95914 0.99783 1.21597 0.99997 1.00777 0.94365 1.22248 1.02391 0.96212 0.80552 0.93439 0.90447 0.92226 0.94807 0.93803 0.92666 0.86590 0.86307 0.84556 0.84569 0.84653 0.82023 0.87386 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 9.18 59.85 0.55 1.61 16 2 N -0.60 -11.44 2.85 -182.95 -0.52 -11.96 16 3 C 0.24 6.10 5.16 -5.20 -0.03 6.08 16 4 C -0.53 -14.32 9.39 -34.44 -0.32 -14.64 16 5 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.51 9.32 7.00 -10.98 -0.08 9.24 16 13 O -0.53 -12.28 15.11 5.56 0.08 -12.19 16 14 C -0.13 -1.46 2.55 -90.14 -0.23 -1.69 16 15 H 0.13 1.05 7.25 -51.93 -0.38 0.67 16 16 C -0.14 -1.52 5.78 -26.74 -0.15 -1.67 16 17 C 0.52 7.26 7.92 -10.86 -0.09 7.18 16 18 O -0.51 -8.36 14.82 5.55 0.08 -8.28 16 19 N -0.55 -7.28 3.14 -112.26 -0.35 -7.63 16 20 C 0.18 2.45 6.60 -83.68 -0.55 1.90 16 21 C -0.14 -1.64 9.40 -39.40 -0.37 -2.01 16 22 C -0.08 -0.87 9.82 -39.57 -0.39 -1.26 16 23 C -0.06 -0.74 6.32 -39.47 -0.25 -0.99 16 24 Cl -0.08 -0.82 28.95 -51.86 -1.50 -2.32 16 25 C -0.08 -0.95 9.82 -39.57 -0.39 -1.34 16 26 C -0.15 -2.00 9.28 -39.40 -0.37 -2.37 16 27 C 0.11 1.20 5.59 -3.12 -0.02 1.18 16 28 H 0.05 0.54 7.27 -51.93 -0.38 0.17 16 29 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 30 H 0.06 0.58 6.27 -51.93 -0.33 0.26 16 31 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.12 1.31 6.21 -51.93 -0.32 0.99 16 35 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.14 1.29 7.02 -52.49 -0.37 0.92 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.16 2.40 5.27 -52.49 -0.28 2.13 16 40 H 0.11 1.41 6.58 -51.93 -0.34 1.07 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -34.36 356.25 -8.75 -43.11 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.85 Total: 0.21 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.78 Total: 2.80 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.14 Total: -44.87 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.17 Total: -20.47 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.36 -8.75 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058216783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.842 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds