Wall clock time and date at job start Tue Mar 31 2020 05:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.46497 * 120.00013 * 2 1 4 4 C 1.50700 * 109.47158 * 90.00409 * 3 2 1 5 5 H 1.07996 * 120.00211 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00162 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00110 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99926 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.47508 * 59.99598 * 8 6 4 10 10 H 1.48500 * 109.46984 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46783 * 299.99212 * 8 6 4 12 12 C 1.34778 * 120.00109 * 179.97438 * 2 1 3 13 13 O 1.21288 * 120.00094 * 184.03276 * 12 2 1 14 14 C 1.50700 * 120.00108 * 4.03842 * 12 2 1 15 15 H 1.09006 * 110.85340 * 326.92476 * 14 12 2 16 16 C 1.54624 * 110.97018 * 90.71414 * 14 12 2 17 17 C 1.51382 * 104.14886 * 93.33803 * 16 14 12 18 18 O 1.21286 * 124.93642 * 196.22064 * 17 16 14 19 19 N 1.34424 * 110.12167 * 16.25456 * 17 16 14 20 20 C 1.39975 * 124.34927 * 180.38430 * 19 17 16 21 21 C 1.38870 * 120.05505 * 356.09202 * 20 19 17 22 22 C 1.38103 * 119.93824 * 179.70038 * 21 20 19 23 23 C 1.38388 * 120.06061 * 0.56912 * 22 21 20 24 24 Cl 1.73595 * 119.94265 * 179.70141 * 23 22 21 25 25 C 1.38379 * 120.11040 * 359.72475 * 23 22 21 26 26 C 1.38114 * 120.06173 * 359.97438 * 25 23 22 27 27 C 1.46760 * 111.30246 * 0.40110 * 19 17 16 28 28 H 1.09004 * 109.47458 * 264.89635 * 1 2 3 29 29 H 1.08999 * 109.47274 * 144.89485 * 1 2 3 30 30 H 1.08997 * 109.47427 * 24.89683 * 1 2 3 31 31 H 1.09004 * 109.47354 * 209.99821 * 3 2 1 32 32 H 1.08992 * 109.47274 * 329.99945 * 3 2 1 33 33 H 0.96995 * 120.00513 * 180.02562 * 7 6 4 34 34 H 1.09001 * 110.48550 * 212.00149 * 16 14 12 35 35 H 1.08997 * 110.49105 * 334.64367 * 16 14 12 36 36 H 1.07999 * 120.02596 * 359.97438 * 21 20 19 37 37 H 1.08005 * 119.97260 * 180.29724 * 22 21 20 38 38 H 1.08001 * 119.97096 * 179.97438 * 25 23 22 39 39 H 1.07995 * 120.03054 * 180.02562 * 26 25 23 40 40 H 1.08993 * 110.24980 * 223.98545 * 27 19 17 41 41 H 1.09002 * 110.24315 * 101.98437 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 1 2.0974 1.0961 2.2417 6 6 3.1260 2.8779 1.6728 7 7 3.5533 3.6181 0.6732 8 14 3.4368 3.4174 3.4340 9 1 4.2394 2.3829 4.1343 10 1 4.1794 4.7034 3.4340 11 1 2.1389 3.5948 4.1336 12 6 2.1388 -1.1672 0.0005 13 8 3.3494 -1.1685 0.0744 14 6 1.3882 -2.4708 -0.0908 15 1 0.4226 -2.3985 0.4100 16 6 1.2161 -2.9082 -1.5639 17 6 2.3993 -3.8170 -1.8206 18 8 2.7946 -4.1493 -2.9180 19 7 2.9477 -4.2025 -0.6554 20 6 4.0638 -5.0402 -0.5467 21 6 4.6301 -5.5958 -1.6865 22 6 5.7350 -6.4170 -1.5770 23 6 6.2707 -6.6959 -0.3319 24 17 7.6549 -7.7349 -0.1972 25 6 5.7046 -6.1485 0.8059 26 6 4.6033 -5.3216 0.7015 27 6 2.2256 -3.6326 0.4881 28 1 -0.3634 -0.0914 1.0236 29 1 -0.3634 -0.8407 -0.5910 30 1 -0.3634 0.9321 -0.4326 31 1 3.1498 1.1384 -0.5138 32 1 1.6084 2.0283 -0.5138 33 1 4.0301 4.4440 0.8504 34 1 0.2811 -3.4533 -1.6932 35 1 1.2487 -2.0425 -2.2253 36 1 4.2094 -5.3822 -2.6580 37 1 6.1788 -6.8455 -2.4636 38 1 6.1242 -6.3680 1.7765 39 1 4.1621 -4.8943 1.5898 40 1 2.9302 -3.2567 1.2299 41 1 1.5723 -4.3829 0.9336 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058216786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:39 Heat of formation + Delta-G solvation = -36.819607 kcal Electronic energy + Delta-G solvation = -26404.127703 eV Core-core repulsion = 22503.234759 eV Total energy + Delta-G solvation = -3900.892944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44652 -39.32944 -38.55392 -36.72163 -36.29322 -34.95473 -33.33829 -32.53298 -31.24017 -29.27717 -28.10509 -27.75078 -26.02011 -24.31452 -23.31859 -22.74072 -21.49423 -20.04292 -18.70819 -17.92932 -17.25671 -16.90630 -16.58604 -15.88415 -15.67296 -15.39509 -15.03867 -14.73333 -14.45203 -14.17152 -13.84761 -13.77719 -13.60368 -13.39296 -13.15611 -12.99730 -12.42346 -12.26887 -12.16284 -12.07068 -11.86025 -11.73779 -11.68343 -11.62803 -11.25185 -10.99923 -10.96398 -10.62947 -10.22778 -10.13903 -9.79131 -9.73640 -9.20865 -9.09499 -8.49660 -7.99140 -7.80085 -6.10727 -4.16034 0.93888 1.15641 2.03841 2.37586 2.64989 3.06174 3.27168 3.32533 3.34638 3.58011 3.65651 3.98555 4.27384 4.38688 4.55673 4.66381 4.73276 4.76793 5.05970 5.14782 5.16413 5.20293 5.24512 5.31200 5.37115 5.47336 5.55661 5.58680 5.80631 5.80897 5.85080 6.00148 6.05887 6.14378 6.26627 6.79326 6.88701 6.90949 7.31619 7.39882 7.83989 7.86836 8.14257 8.22877 8.77263 8.92100 9.49097 10.97482 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.002945 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.497759 B = 9504.172438 C =10911.380821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.597 5.597 3 C 0.246 3.754 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.507 3.493 13 O -0.528 6.528 14 C -0.128 4.128 15 H 0.122 0.878 16 C -0.137 4.137 17 C 0.525 3.475 18 O -0.510 6.510 19 N -0.549 5.549 20 C 0.184 3.816 21 C -0.149 4.149 22 C -0.081 4.081 23 C -0.066 4.066 24 Cl -0.079 7.079 25 C -0.081 4.081 26 C -0.144 4.144 27 C 0.113 3.887 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.163 0.837 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 -19.753 -1.323 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.329 5.329 3 C 0.127 3.873 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.292 3.708 13 O -0.404 6.404 14 C -0.150 4.150 15 H 0.140 0.860 16 C -0.177 4.177 17 C 0.315 3.685 18 O -0.386 6.386 19 N -0.271 5.271 20 C 0.090 3.910 21 C -0.169 4.169 22 C -0.100 4.100 23 C -0.093 4.093 24 Cl -0.051 7.051 25 C -0.100 4.100 26 C -0.165 4.165 27 C -0.010 4.010 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.181 0.819 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.119 0.881 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.339 -19.773 -1.914 20.334 hybrid contribution 0.241 0.518 1.193 1.323 sum -4.098 -19.255 -0.721 19.699 Atomic orbital electron populations 1.21691 0.81235 1.02196 1.01070 1.48143 1.06290 1.07684 1.70787 1.19347 0.92488 0.77779 0.97686 1.21342 1.36844 1.06352 0.92130 0.92498 1.24941 0.95285 0.96375 0.97487 1.69912 1.38152 1.14374 1.30864 0.86550 0.78366 0.77897 0.84557 1.20166 1.21137 1.20218 1.19866 0.87946 0.84578 0.78455 1.90738 1.13729 1.86728 1.49214 1.22455 1.01288 0.94308 0.96937 0.85996 1.22292 0.98129 1.00774 0.96546 1.20985 0.84327 0.80031 0.83179 1.90604 1.65327 1.57552 1.25109 1.45713 1.27254 1.45250 1.08860 1.17840 0.87401 0.91293 0.94513 1.21618 0.97008 0.98494 0.99806 1.20920 0.95397 0.97549 0.96121 1.20845 0.93133 1.00096 0.95234 1.98351 1.42180 1.66097 1.98427 1.20795 0.95157 0.96248 0.97785 1.20760 0.98068 1.01369 0.96282 1.22185 0.95640 0.94328 0.88808 0.92994 0.92629 0.90890 0.93958 0.94817 0.92563 0.86289 0.86903 0.81939 0.84685 0.84590 0.84571 0.88119 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 9.87 59.84 0.59 1.68 16 2 N -0.60 -11.40 2.86 -182.97 -0.52 -11.92 16 3 C 0.25 6.13 5.17 -5.20 -0.03 6.10 16 4 C -0.53 -14.41 9.39 -34.44 -0.32 -14.73 16 5 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 C 0.51 9.27 6.73 -10.98 -0.07 9.20 16 13 O -0.53 -12.33 15.62 5.55 0.09 -12.25 16 14 C -0.13 -1.49 2.54 -90.14 -0.23 -1.72 16 15 H 0.12 0.99 6.82 -51.93 -0.35 0.63 16 16 C -0.14 -1.47 6.17 -26.69 -0.16 -1.64 16 17 C 0.53 7.50 7.93 -10.81 -0.09 7.41 16 18 O -0.51 -8.56 14.80 5.55 0.08 -8.48 16 19 N -0.55 -7.39 3.14 -112.22 -0.35 -7.74 16 20 C 0.18 2.53 6.60 -83.68 -0.55 1.97 16 21 C -0.15 -2.04 9.30 -39.40 -0.37 -2.41 16 22 C -0.08 -0.97 9.82 -39.58 -0.39 -1.36 16 23 C -0.07 -0.77 6.32 -39.47 -0.25 -1.02 16 24 Cl -0.08 -0.84 28.95 -51.86 -1.50 -2.34 16 25 C -0.08 -0.90 9.82 -39.57 -0.39 -1.29 16 26 C -0.14 -1.72 9.41 -39.40 -0.37 -2.09 16 27 C 0.11 1.26 5.65 -3.12 -0.02 1.24 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.51 6.52 -51.93 -0.34 0.18 16 30 H 0.07 0.97 7.83 -51.93 -0.41 0.56 16 31 H 0.04 1.21 7.48 -51.93 -0.39 0.82 16 32 H 0.03 0.85 7.86 -51.93 -0.41 0.44 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.11 1.32 7.90 -51.93 -0.41 0.91 16 36 H 0.16 2.41 5.22 -52.49 -0.27 2.14 16 37 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.14 1.39 6.78 -52.49 -0.36 1.03 16 40 H 0.10 1.29 6.64 -51.93 -0.34 0.94 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -34.72 359.41 -8.76 -43.48 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.94 Total: -0.07 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -2.74 Total: 2.97 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.14 Total: -45.04 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.17 Total: -20.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.72 -8.76 -43.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058216786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.665 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds