Wall clock time and date at job start Tue Mar 31 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34224 * 116.99991 * 2 1 4 4 O 1.20825 * 120.00112 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99967 * 180.02562 * 3 2 1 6 6 C 1.50699 * 109.47163 * 180.02562 * 5 3 2 7 7 N 1.33315 * 126.54795 * 90.02290 * 6 5 3 8 8 N 1.29004 * 107.35272 * 179.97438 * 7 6 5 9 9 N 1.28783 * 108.72616 * 0.02562 * 8 7 6 10 10 C 1.46492 * 125.44536 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47739 * 89.97420 * 10 9 8 12 12 O 1.21286 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00648 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00182 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46858 * 90.00037 * 14 13 11 16 16 H 1.07997 * 119.99840 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99950 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00045 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46939 * 90.00603 * 19 17 15 21 21 H 1.48499 * 109.46903 * 210.00615 * 19 17 15 22 22 H 1.48505 * 109.47078 * 330.00382 * 19 17 15 23 23 C 1.46501 * 119.99520 * 359.97438 * 13 11 10 24 24 C 1.52999 * 109.46988 * 90.00401 * 23 13 11 25 25 C 1.47204 * 109.47101 * 179.97438 * 24 23 13 26 26 N 9.69274 * 157.32104 * 122.52053 * 4 1 2 27 27 N 1.28879 * 109.10258 * 359.97438 * 9 8 7 28 28 H 1.09001 * 109.47223 * 299.99979 * 1 2 3 29 29 H 1.09001 * 109.47707 * 59.99867 * 1 2 3 30 30 H 1.09005 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47084 * 60.00390 * 5 3 2 32 32 H 1.08998 * 109.47232 * 300.00232 * 5 3 2 33 33 H 1.09008 * 109.47089 * 209.97560 * 10 9 8 34 34 H 1.09003 * 109.47636 * 329.96778 * 10 9 8 35 35 H 1.08999 * 109.47237 * 209.99719 * 14 13 11 36 36 H 1.08998 * 109.46892 * 330.00247 * 14 13 11 37 37 H 0.96991 * 120.00334 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.46886 * 209.99638 * 23 13 11 39 39 H 1.08996 * 109.47275 * 330.00017 * 23 13 11 40 40 H 1.08999 * 109.46684 * 299.99361 * 24 23 13 41 41 H 1.08996 * 109.47426 * 59.99708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 3.9936 2.7200 0.0002 7 7 4.2196 3.4804 1.0716 8 7 4.5652 4.6489 0.6480 9 7 4.5610 4.6399 -0.6398 10 6 4.8977 5.7780 -1.4985 11 6 6.3753 5.7646 -1.7941 12 8 7.0781 4.8905 -1.3325 13 7 6.9158 6.7237 -2.5714 14 6 8.3524 6.7109 -2.8583 15 6 8.6080 5.9075 -4.1074 16 1 7.7829 5.4523 -4.6350 17 6 9.8952 5.7543 -4.5772 18 7 10.9000 6.3090 -3.9350 19 14 10.2120 4.7591 -6.1259 20 1 10.1514 5.6532 -7.3099 21 1 11.5566 4.1338 -6.0460 22 1 9.1798 3.6989 -6.2528 23 6 6.0667 7.7791 -3.1294 24 6 6.0118 8.9578 -2.1555 25 6 5.1591 10.0185 -2.7164 26 7 4.5023 10.8364 -3.1489 27 7 4.2143 3.4691 -1.0522 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9557 0.7809 -0.8909 32 1 3.9564 0.7805 0.8891 33 1 4.3397 5.7063 -2.4321 34 1 4.6372 6.7064 -0.9901 35 1 8.7027 7.7325 -3.0054 36 1 8.8861 6.2608 -2.0212 37 1 11.8055 6.2010 -4.2653 38 1 6.4805 8.1131 -4.0809 39 1 5.0606 7.3907 -3.2870 40 1 5.5981 8.6238 -1.2040 41 1 7.0179 9.3462 -1.9979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058217692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:09 Heat of formation + Delta-G solvation = 45.970088 kcal Electronic energy + Delta-G solvation = -28128.334271 eV Core-core repulsion = 23854.907695 eV Total energy + Delta-G solvation = -4273.426576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.31517 -40.70359 -39.67011 -37.08558 -36.87994 -35.63451 -35.06654 -33.66922 -33.03819 -31.27069 -31.07868 -29.25915 -27.69713 -27.01502 -24.33329 -23.86465 -23.28728 -22.43857 -21.18636 -19.32458 -18.19716 -17.89225 -17.84399 -17.18082 -16.95766 -16.81211 -16.57607 -16.06632 -15.46776 -15.25614 -14.88476 -14.70495 -14.29534 -14.10103 -13.94677 -13.80558 -13.64756 -13.32912 -12.87189 -12.65031 -12.62973 -12.52049 -12.39180 -12.21492 -11.93061 -11.81293 -11.43644 -11.15231 -11.13536 -11.05982 -11.01668 -10.94159 -10.91141 -10.74756 -10.36028 -10.28423 -9.87438 -9.38457 -8.58503 -8.15889 -6.20531 -4.26165 1.24370 1.72327 1.89034 1.92957 2.57642 2.62723 2.70631 2.81155 3.21708 3.28973 3.29949 3.36334 3.68367 3.90723 4.12235 4.31198 4.46777 4.49714 4.59906 4.63145 4.78509 4.85239 4.86456 4.92129 4.96667 5.15312 5.19448 5.19814 5.26790 5.55705 5.62031 5.77759 5.85921 6.01508 6.08036 6.64933 7.08716 7.20970 7.40088 7.45717 7.73822 7.87597 8.01200 8.37698 8.42807 8.77639 9.40057 10.87727 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.002988 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.525741 B = 9367.959515 C =11269.663903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.469 3.531 4 O -0.497 6.497 5 C -0.011 4.011 6 C 0.168 3.832 7 N -0.272 5.272 8 N -0.046 5.046 9 N -0.114 5.114 10 C 0.102 3.898 11 C 0.499 3.501 12 O -0.510 6.510 13 N -0.585 5.585 14 C 0.246 3.754 15 C -0.534 4.534 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.109 3.891 24 C -0.052 4.052 25 C 0.215 3.785 26 N -0.439 5.439 27 N -0.279 5.279 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.265 0.735 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.452 -6.334 6.396 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.310 3.690 4 O -0.384 6.384 5 C -0.051 4.051 6 C -0.115 4.115 7 N -0.144 5.144 8 N -0.039 5.039 9 N -0.025 5.025 10 C -0.023 4.023 11 C 0.282 3.718 12 O -0.385 6.385 13 N -0.317 5.317 14 C 0.128 3.872 15 C -0.573 4.573 16 H 0.078 0.922 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.017 4.017 24 C -0.094 4.094 25 C -0.104 4.104 26 N -0.116 5.116 27 N -0.129 5.129 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.862 -4.637 6.214 18.559 hybrid contribution 0.249 -1.058 -1.030 1.497 sum -16.613 -5.695 5.184 18.311 Atomic orbital electron populations 1.23298 0.75844 1.03829 1.02744 1.86474 1.23751 1.32769 1.84260 1.23271 0.91363 0.81633 0.72705 1.90716 1.66964 1.36353 1.44329 1.19314 0.88614 0.88242 1.08918 1.24347 1.03657 0.98190 0.85302 1.75744 1.15933 0.96882 1.25828 1.78934 1.14753 1.16490 0.93685 1.49343 1.39823 1.08664 1.04692 1.22352 0.98533 0.85482 0.95907 1.19911 0.87742 0.83501 0.80689 1.90811 1.61523 1.35238 1.50892 1.48191 1.11866 1.24159 1.47504 1.19476 0.71950 0.98209 0.97579 1.21364 0.93054 1.33312 1.09559 0.92214 1.24912 0.95866 0.95588 0.97485 1.69907 0.99536 1.44009 1.39523 0.86490 0.77813 0.80311 0.82813 1.20540 1.21028 1.19813 1.21469 0.95839 0.86943 0.97428 1.19892 0.99102 0.90612 0.99778 1.28941 0.93622 0.94198 0.93600 1.81177 1.10632 1.10880 1.08945 1.74600 1.17704 0.93007 1.27623 0.91752 0.91780 0.87857 0.84367 0.84152 0.83998 0.84070 0.94066 0.93324 0.92491 0.87787 0.90539 0.87496 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.18 10.56 -39.24 -0.41 -3.60 16 3 C 0.47 5.16 7.95 36.01 0.29 5.44 16 4 O -0.50 -7.21 15.78 -18.75 -0.30 -7.50 16 5 C -0.01 -0.10 6.44 -29.03 -0.19 -0.29 16 6 C 0.17 2.47 6.86 -156.62 -1.07 1.39 16 7 N -0.27 -4.46 12.50 32.45 0.41 -4.06 16 8 N -0.05 -0.76 13.25 60.35 0.80 0.04 16 9 N -0.11 -1.78 3.49 -11.72 -0.04 -1.82 16 10 C 0.10 1.22 5.64 -5.20 -0.03 1.19 16 11 C 0.50 8.40 7.74 -10.99 -0.09 8.31 16 12 O -0.51 -11.44 16.01 5.55 0.09 -11.35 16 13 N -0.59 -9.43 2.46 -175.06 -0.43 -9.86 16 14 C 0.25 5.39 5.16 -5.19 -0.03 5.37 16 15 C -0.53 -13.49 9.39 -34.44 -0.32 -13.82 16 16 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.11 1.18 5.17 -4.04 -0.02 1.15 16 24 C -0.05 -0.44 6.03 -29.52 -0.18 -0.61 16 25 C 0.21 2.23 15.43 -20.80 -0.32 1.91 16 26 N -0.44 -5.89 18.53 42.10 0.78 -5.11 16 27 N -0.28 -4.47 12.13 32.47 0.39 -4.07 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.14 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.14 1.29 7.40 -51.92 -0.38 0.91 16 34 H 0.14 1.10 7.19 -51.93 -0.37 0.72 16 35 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.10 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.08 0.60 6.44 -51.93 -0.33 0.26 16 40 H 0.11 0.64 7.22 -51.93 -0.37 0.27 16 41 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -38.02 377.44 -3.07 -41.09 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -4.77 Total: -4.10 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -0.99 Total: 12.96 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 2.64 Total: -48.71 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.62 Total: -22.45 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.02 -3.07 -41.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058217692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.065 kcal (2) G-P(sol) polarization free energy of solvation -38.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds