Wall clock time and date at job start Tue Mar 31 2020 05:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39738 * 125.77907 * 2 1 4 4 C 1.36139 * 107.86178 * 180.14532 * 3 2 1 5 5 N 1.39385 * 126.26587 * 179.90458 * 4 3 2 6 6 C 1.34784 * 119.99678 * 359.69111 * 5 4 3 7 7 O 1.21597 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.47593 * 119.99622 * 179.97438 * 6 5 4 9 9 C 1.39708 * 120.15972 * 0.25867 * 8 6 5 10 10 C 1.37793 * 119.89104 * 180.24907 * 9 8 6 11 11 C 1.38616 * 120.20364 * 359.74614 * 10 9 8 12 12 Cl 1.73603 * 119.83751 * 180.02562 * 11 10 9 13 13 C 1.38355 * 120.31659 * 0.02562 * 11 10 9 14 14 C 1.38244 * 120.10689 * 359.97438 * 13 11 10 15 15 F 1.35104 * 120.10508 * 179.97438 * 14 13 11 16 16 N 1.35812 * 107.47419 * 359.64702 * 4 3 2 17 17 C 1.46496 * 126.09345 * 180.19089 * 16 4 3 18 18 C 1.50696 * 109.47154 * 89.99670 * 17 16 4 19 19 H 1.07996 * 120.00277 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00014 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99952 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00295 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47278 * 59.99913 * 22 20 18 24 24 H 1.48497 * 109.47207 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47012 * 300.00233 * 22 20 18 26 26 N 1.30831 * 125.78306 * 179.74900 * 2 1 3 27 27 H 1.09005 * 109.46406 * 270.22356 * 1 2 3 28 28 H 1.08996 * 109.47287 * 30.22990 * 1 2 3 29 29 H 1.09002 * 109.46639 * 150.23431 * 1 2 3 30 30 H 1.08002 * 126.06810 * 0.05445 * 3 2 1 31 31 H 0.96995 * 120.00156 * 179.69467 * 5 4 3 32 32 H 1.08003 * 120.05287 * 359.97359 * 9 8 6 33 33 H 1.08003 * 119.89900 * 179.72083 * 10 9 8 34 34 H 1.08003 * 119.94685 * 180.02562 * 13 11 10 35 35 H 1.09003 * 109.47143 * 209.99748 * 17 16 4 36 36 H 1.08999 * 109.47064 * 329.99442 * 17 16 4 37 37 H 0.97003 * 120.00187 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1337 0.0000 4 6 3.6194 0.7148 -0.0033 5 7 4.7496 1.5305 -0.0063 6 6 4.6129 2.8714 -0.0124 7 8 3.5036 3.3695 -0.0157 8 6 5.8097 3.7351 -0.0149 9 6 7.0858 3.1663 -0.0166 10 6 8.1994 3.9779 -0.0138 11 6 8.0573 5.3568 -0.0147 12 17 9.4668 6.3703 -0.0119 13 6 6.7977 5.9291 -0.0179 14 6 5.6717 5.1271 -0.0207 15 9 4.4417 5.6861 -0.0233 16 7 3.6089 -0.6432 0.0027 17 6 4.7860 -1.5153 0.0058 18 6 5.1905 -1.8081 1.4276 19 1 4.6269 -1.3870 2.2470 20 6 6.2795 -2.6144 1.6825 21 7 6.9655 -3.1276 0.6847 22 14 6.7806 -2.9778 3.4449 23 1 5.6612 -3.6541 4.1484 24 1 7.9739 -3.8618 3.4480 25 1 7.1055 -1.7061 4.1394 26 7 2.2720 -1.0613 0.0046 27 1 -0.3632 0.0040 1.0277 28 1 -0.3633 0.8879 -0.5174 29 1 -0.3633 -0.8921 -0.5102 30 1 1.9875 2.1599 0.0008 31 1 5.6345 1.1332 -0.0040 32 1 7.1992 2.0923 -0.0155 33 1 9.1859 3.5383 -0.0105 34 1 6.6940 7.0041 -0.0190 35 1 4.5477 -2.4490 -0.5037 36 1 5.6074 -1.0189 -0.5108 37 1 7.7319 -3.6945 0.8639 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058223264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:11 Heat of formation + Delta-G solvation = 18.569691 kcal Electronic energy + Delta-G solvation = -25818.735036 eV Core-core repulsion = 21731.357736 eV Total energy + Delta-G solvation = -4087.377300 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.073 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.14183 -40.99711 -39.85932 -38.59708 -36.87555 -34.89532 -33.84051 -32.19559 -31.67319 -31.00750 -29.15940 -28.19682 -26.07241 -24.60730 -23.40898 -22.84040 -21.56772 -19.93258 -19.53089 -18.23798 -17.28170 -17.09829 -16.80112 -16.30793 -16.06435 -15.65696 -15.28406 -15.07571 -14.83404 -14.38390 -14.04059 -13.93089 -13.77059 -13.59108 -13.01942 -12.80406 -12.71866 -12.53914 -12.11407 -12.01245 -11.82617 -11.71285 -11.61344 -11.47864 -11.14134 -10.91578 -10.48884 -10.38391 -10.05285 -9.87521 -9.60908 -9.51483 -9.16112 -8.76488 -7.95942 -7.50489 -6.38095 -4.47014 0.12014 0.64641 1.51240 2.20460 2.62002 2.83887 3.14701 3.19848 3.23796 3.30760 3.61092 3.67713 3.77164 4.15645 4.20071 4.32965 4.46134 4.63624 4.94999 4.98038 5.27371 5.32098 5.49033 5.55482 5.59356 5.64243 6.02495 6.09478 6.11505 6.16519 6.22921 6.34776 6.61011 6.77633 6.99320 7.42482 7.50724 7.56255 7.74383 7.81447 8.16022 8.56180 8.65623 9.20948 10.68803 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.009051 B = 0.003878 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.918847 B = 7219.046872 C = 9820.337367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.289 4.289 4 C 0.298 3.702 5 N -0.631 5.631 6 C 0.563 3.437 7 O -0.496 6.496 8 C -0.162 4.162 9 C -0.041 4.041 10 C -0.126 4.126 11 C 0.016 3.984 12 Cl -0.050 7.050 13 C -0.159 4.159 14 C 0.178 3.822 15 F -0.105 7.105 16 N -0.345 5.345 17 C 0.257 3.743 18 C -0.543 4.543 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.281 5.281 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.162 0.838 31 H 0.415 0.585 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 16.849 -2.907 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.321 4.321 4 C 0.077 3.923 5 N -0.278 5.278 6 C 0.349 3.651 7 O -0.370 6.370 8 C -0.166 4.166 9 C -0.060 4.060 10 C -0.144 4.144 11 C -0.011 4.011 12 Cl -0.021 7.021 13 C -0.179 4.179 14 C 0.157 3.843 15 F -0.083 7.083 16 N -0.131 5.131 17 C 0.139 3.861 18 C -0.581 4.581 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.732 3.268 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.200 1.200 26 N -0.106 5.106 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.180 0.820 31 H 0.253 0.747 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.163 15.852 -2.961 16.433 hybrid contribution 1.036 0.441 0.996 1.503 sum 4.199 16.293 -1.966 16.940 Atomic orbital electron populations 1.20030 0.87506 1.02386 1.02211 1.22025 0.96575 0.90940 1.01882 1.21291 0.89039 1.00546 1.21244 1.17945 0.87708 0.83318 1.03360 1.42521 1.08530 1.05169 1.71598 1.17704 0.88625 0.81105 0.77630 1.90792 1.25452 1.73652 1.47106 1.20008 0.94503 0.92420 1.09673 1.21343 0.89899 1.01165 0.93563 1.21096 1.00523 0.90919 1.01908 1.20854 0.88093 0.91715 1.00474 1.98409 1.39003 1.68242 1.96443 1.20942 0.89541 1.01558 1.05851 1.17351 0.80550 0.89332 0.97107 1.91642 1.39278 1.84887 1.92498 1.49514 1.06520 1.01939 1.55143 1.19621 0.77786 0.89756 0.98901 1.21315 1.13412 1.32058 0.91324 0.91713 1.24923 0.95671 0.94783 0.98176 1.69905 1.19194 1.32423 1.31182 0.86422 0.78151 0.78545 0.83662 1.19824 1.20857 1.19962 1.77344 0.86110 1.21788 1.25378 0.91268 0.91091 0.91510 0.82032 0.74705 0.83029 0.83157 0.82807 0.92444 0.93917 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.01 7.20 -82.46 -0.59 0.42 16 3 C -0.29 -5.91 9.58 -39.78 -0.38 -6.29 16 4 C 0.30 6.23 7.68 -152.74 -1.17 5.05 16 5 N -0.63 -10.89 5.36 -12.27 -0.07 -10.96 16 6 C 0.56 9.15 7.73 -12.44 -0.10 9.05 16 7 O -0.50 -9.33 12.46 5.28 0.07 -9.26 16 8 C -0.16 -2.05 5.88 -104.91 -0.62 -2.66 16 9 C -0.04 -0.41 9.54 -39.20 -0.37 -0.79 16 10 C -0.13 -1.08 9.81 -39.60 -0.39 -1.47 16 11 C 0.02 0.14 6.32 -39.40 -0.25 -0.11 16 12 Cl -0.05 -0.39 28.95 -51.86 -1.50 -1.89 16 13 C -0.16 -1.48 9.79 -39.54 -0.39 -1.86 16 14 C 0.18 2.12 7.28 -38.96 -0.28 1.84 16 15 F -0.11 -1.46 15.55 2.25 0.04 -1.43 16 16 N -0.35 -7.96 3.62 -61.45 -0.22 -8.19 16 17 C 0.26 6.26 6.02 -5.20 -0.03 6.22 16 18 C -0.54 -14.22 9.39 -34.44 -0.32 -14.54 16 19 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -23.59 13.29 55.43 0.74 -22.85 16 22 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 N -0.28 -6.47 12.56 33.64 0.42 -6.05 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.16 3.23 5.83 -52.49 -0.31 2.92 16 31 H 0.42 6.39 6.02 -40.82 -0.25 6.15 16 32 H 0.15 1.37 6.40 -52.48 -0.34 1.03 16 33 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.04 0.99 7.52 -51.93 -0.39 0.60 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -30.79 345.35 -8.33 -39.12 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -3.36 Total: 5.15 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -4.62 Total: -4.01 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.87 Total: -48.04 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.07 Total: -9.26 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.79 -8.33 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058223264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.689 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds