Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00489 * 2 1 4 4 C 1.50706 * 109.47366 * 270.00600 * 3 2 1 5 5 H 1.08003 * 119.99612 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00017 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99713 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00112 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46825 * 90.00257 * 8 6 4 10 10 H 1.48495 * 109.47431 * 209.99770 * 8 6 4 11 11 H 1.48497 * 109.47530 * 330.00591 * 8 6 4 12 12 C 1.34779 * 119.99697 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00034 * 179.97438 * 12 2 1 14 14 C 1.50693 * 119.99941 * 359.97438 * 12 2 1 15 15 C 1.53004 * 109.47253 * 180.02562 * 14 12 2 16 16 C 1.50693 * 109.47253 * 179.97438 * 15 14 12 17 17 O 1.21281 * 120.00332 * 359.97438 * 16 15 14 18 18 N 1.34786 * 120.00009 * 179.97438 * 16 15 14 19 19 C 1.47064 * 120.86940 * 179.97438 * 18 16 15 20 20 C 1.53183 * 108.56820 * 115.11678 * 19 18 16 21 21 C 1.51394 * 109.07160 * 45.55137 * 20 19 18 22 22 S 1.75897 * 125.06846 * 161.89825 * 21 20 19 23 23 C 1.75721 * 91.11685 * 179.67609 * 22 21 20 24 24 C 1.32924 * 109.58527 * 0.10724 * 23 22 21 25 25 C 1.34652 * 125.09535 * 341.81418 * 21 20 19 26 26 C 1.46975 * 120.86485 * 0.02562 * 18 16 15 27 27 H 1.08995 * 109.46765 * 269.99934 * 1 2 3 28 28 H 1.09002 * 109.46897 * 29.99192 * 1 2 3 29 29 H 1.08997 * 109.47192 * 149.99499 * 1 2 3 30 30 H 1.09001 * 109.46634 * 29.99752 * 3 2 1 31 31 H 1.08997 * 109.47551 * 150.00490 * 3 2 1 32 32 H 0.97010 * 119.99955 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47412 * 60.01044 * 14 12 2 34 34 H 1.09004 * 109.47531 * 300.00545 * 14 12 2 35 35 H 1.09009 * 109.46853 * 59.99853 * 15 14 12 36 36 H 1.09004 * 109.46873 * 300.00428 * 15 14 12 37 37 H 1.09003 * 109.61908 * 234.84065 * 19 18 16 38 38 H 1.08997 * 109.62078 * 355.20577 * 19 18 16 39 39 H 1.09007 * 109.54018 * 165.43253 * 20 19 18 40 40 H 1.09002 * 109.53910 * 285.59362 * 20 19 18 41 41 H 1.08001 * 125.20409 * 180.37041 * 23 22 21 42 42 H 1.08002 * 122.16570 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.79595 * 105.49579 * 26 18 16 44 44 H 1.08994 * 109.79987 * 344.63305 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0959 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.3457 3.2574 -2.9127 8 14 3.7320 3.9298 -0.2529 9 1 5.1054 3.5089 0.1240 10 1 3.7470 5.3564 -0.6648 11 1 2.8255 3.7601 0.9110 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 6 1.6259 -4.9403 0.0001 17 8 0.4131 -4.9403 0.0010 18 7 2.2998 -6.1076 -0.0003 19 6 1.5838 -7.3922 0.0009 20 6 1.8832 -8.1187 -1.3140 21 6 3.3686 -8.0399 -1.5956 22 16 4.2420 -9.0800 -2.7134 23 6 5.7510 -8.2527 -2.3580 24 6 5.5331 -7.2923 -1.4653 25 6 4.2184 -7.1622 -1.0293 26 6 3.7694 -6.1299 -0.0008 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0283 0.5138 31 1 3.1501 1.1383 0.5137 32 1 3.8219 4.0837 -3.0899 33 1 0.7584 -2.5299 -0.8903 34 1 0.7589 -2.5302 0.8897 35 1 3.0062 -3.5775 0.8895 36 1 3.0062 -3.5775 -0.8905 37 1 1.9230 -7.9995 0.8401 38 1 0.5120 -7.2138 0.0878 39 1 1.5830 -9.1633 -1.2300 40 1 1.3314 -7.6451 -2.1261 41 1 6.7081 -8.4859 -2.8007 42 1 6.3255 -6.6548 -1.1017 43 1 4.1346 -6.4096 0.9873 44 1 4.1534 -5.1467 -0.2725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058231935.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = -32.633072 kcal Electronic energy + Delta-G solvation = -26183.891547 eV Core-core repulsion = 22421.056945 eV Total energy + Delta-G solvation = -3762.834601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.56357 -39.12571 -38.39810 -35.68261 -34.95230 -33.27215 -32.58275 -31.96570 -29.82435 -28.66035 -26.70979 -25.90423 -25.02103 -23.91830 -22.62501 -21.68294 -19.48195 -18.63541 -18.37015 -17.70126 -16.95610 -16.85945 -16.36488 -16.08826 -15.78356 -15.20528 -15.15455 -15.06206 -14.50202 -13.96960 -13.82403 -13.67042 -13.52243 -13.12428 -12.94318 -12.75372 -12.67331 -12.29307 -12.17738 -12.09314 -11.99873 -11.92656 -11.76802 -11.52738 -11.31831 -11.09907 -11.05604 -10.84549 -10.50794 -10.13397 -9.91563 -9.53305 -9.03547 -9.00993 -8.86992 -8.62913 -8.58144 -7.68345 -6.07777 -4.06464 0.67537 1.29196 1.67463 2.33032 2.50681 2.68438 3.29792 3.35794 3.36364 3.37375 3.86418 4.25944 4.37034 4.40321 4.51940 4.62459 4.82671 4.91420 4.96195 5.04450 5.10568 5.18382 5.20776 5.23948 5.32061 5.35246 5.49204 5.58558 5.63609 5.72827 5.77361 5.89077 5.94736 6.01081 6.04170 6.15482 6.19850 6.24174 6.71405 6.95206 7.12356 7.35220 7.62104 7.99555 8.26384 8.48144 8.93412 8.99326 9.52532 11.05679 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.002408 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.378235 B =11625.407765 C =12666.776871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.597 5.597 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.546 6.546 14 C -0.122 4.122 15 C -0.124 4.124 16 C 0.523 3.477 17 O -0.539 6.539 18 N -0.618 5.618 19 C 0.117 3.883 20 C -0.064 4.064 21 C -0.169 4.169 22 S 0.093 5.907 23 C -0.212 4.212 24 C -0.121 4.121 25 C -0.125 4.125 26 C 0.171 3.829 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.166 0.834 42 H 0.144 0.856 43 H 0.086 0.914 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -26.253 6.082 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.329 5.329 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.425 6.425 14 C -0.163 4.163 15 C -0.164 4.164 16 C 0.313 3.687 17 O -0.415 6.415 18 N -0.351 5.351 19 C -0.007 4.007 20 C -0.104 4.104 21 C -0.286 4.286 22 S 0.359 5.641 23 C -0.348 4.348 24 C -0.151 4.151 25 C -0.138 4.138 26 C 0.045 3.955 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.184 0.816 42 H 0.161 0.839 43 H 0.104 0.896 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.229 -27.285 4.992 27.765 hybrid contribution 0.973 1.729 1.222 2.330 sum -0.257 -25.556 6.214 26.302 Atomic orbital electron populations 1.21694 0.80768 1.03172 1.00573 1.47829 1.06404 1.07120 1.71539 1.19669 0.92459 0.80144 0.98342 1.21340 1.36900 1.07120 0.91299 0.90786 1.24866 0.95274 0.97361 0.95586 1.69904 1.41553 1.23555 1.18666 0.86835 0.80087 0.79734 0.82938 1.19915 1.21092 1.19061 1.20335 0.88017 0.85203 0.77090 1.90651 1.13907 1.87410 1.50525 1.21394 0.98370 0.91482 1.05057 1.21435 0.98988 0.90125 1.05877 1.20871 0.87964 0.85242 0.74643 1.90681 1.13924 1.87279 1.49663 1.48081 1.06623 1.06018 1.74423 1.21550 0.99206 0.83741 0.96232 1.20672 0.88999 1.01652 0.99126 1.24680 0.99648 1.01152 1.03137 1.84211 1.00086 1.36130 1.43649 1.25362 1.01587 1.02504 1.05310 1.19943 0.96529 0.99752 0.98921 1.19825 0.93019 0.99448 1.01472 1.20674 0.79276 0.98625 0.96893 0.93573 0.90607 0.91820 0.95241 0.94538 0.92579 0.88594 0.88834 0.88020 0.87829 0.90777 0.87940 0.89405 0.89619 0.81649 0.83862 0.89633 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.91 16 2 N -0.60 -12.44 2.86 -182.95 -0.52 -12.97 16 3 C 0.21 5.29 4.23 -5.19 -0.02 5.27 16 4 C -0.53 -15.29 9.94 -34.44 -0.34 -15.64 16 5 H 0.07 2.35 8.06 -52.48 -0.42 1.93 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 8 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 12 C 0.51 10.16 7.67 -10.99 -0.08 10.08 16 13 O -0.55 -12.88 15.56 5.56 0.09 -12.80 16 14 C -0.12 -1.84 3.54 -27.88 -0.10 -1.94 16 15 C -0.12 -1.63 3.39 -27.88 -0.09 -1.72 16 16 C 0.52 6.65 7.71 -10.98 -0.08 6.57 16 17 O -0.54 -8.28 15.42 5.56 0.09 -8.20 16 18 N -0.62 -6.33 2.92 -173.05 -0.50 -6.83 16 19 C 0.12 1.00 6.40 -3.64 -0.02 0.97 16 20 C -0.06 -0.51 6.43 -27.45 -0.18 -0.69 16 21 C -0.17 -1.54 6.39 -35.24 -0.23 -1.77 16 22 S 0.09 0.77 23.31 -107.50 -2.51 -1.74 16 23 C -0.21 -1.69 11.20 28.90 0.32 -1.37 16 24 C -0.12 -1.03 10.00 -41.09 -0.41 -1.44 16 25 C -0.12 -1.15 5.86 -104.68 -0.61 -1.76 16 26 C 0.17 1.47 6.52 -4.05 -0.03 1.45 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 29 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 30 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 31 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.10 1.43 7.36 -51.93 -0.38 1.05 16 34 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 35 H 0.10 1.23 8.06 -51.92 -0.42 0.81 16 36 H 0.10 1.40 7.53 -51.93 -0.39 1.01 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.95 7.02 -51.93 -0.36 0.59 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.11 0.91 6.16 -51.93 -0.32 0.59 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -36.02 373.11 -9.32 -45.35 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.32 Total: -0.23 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -1.36 Total: 1.91 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.25 Total: -46.88 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.17 Total: -21.00 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.02 -9.32 -45.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058231935.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.713 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds