Wall clock time and date at job start Tue Mar 31 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39714 * 125.77716 * 2 1 4 4 C 1.36157 * 107.86215 * 180.16342 * 3 2 1 5 5 N 1.39345 * 126.26855 * 179.84448 * 4 3 2 6 6 C 1.34775 * 119.99815 * 359.69765 * 5 4 3 7 7 O 1.21528 * 119.99980 * 0.02562 * 6 5 4 8 8 C 1.48166 * 119.99773 * 179.97438 * 6 5 4 9 9 C 1.40611 * 119.75262 * 180.02562 * 8 6 5 10 10 N 1.31255 * 120.57202 * 180.02562 * 9 8 6 11 11 C 1.33797 * 119.80847 * 0.02562 * 10 9 8 12 12 C 1.40534 * 120.99583 * 179.97438 * 11 10 9 13 13 C 1.36079 * 119.75437 * 180.02562 * 12 11 10 14 14 C 1.39475 * 121.01372 * 359.97438 * 13 12 11 15 15 C 1.35986 * 120.98213 * 0.02562 * 14 13 12 16 16 C 1.40821 * 119.69826 * 359.97438 * 15 14 13 17 17 N 1.32183 * 119.75582 * 0.02562 * 8 6 5 18 18 N 1.35818 * 107.46724 * 359.59021 * 4 3 2 19 19 C 1.46506 * 126.09517 * 180.24029 * 18 4 3 20 20 C 1.50699 * 109.47157 * 89.99874 * 19 18 4 21 21 H 1.07996 * 119.99985 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00035 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99821 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00234 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47081 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47090 * 119.99892 * 24 22 20 27 27 H 1.48501 * 109.47353 * 239.99830 * 24 22 20 28 28 N 1.30841 * 125.77646 * 179.70420 * 2 1 3 29 29 H 1.08993 * 109.46615 * 270.27088 * 1 2 3 30 30 H 1.09000 * 109.47186 * 30.27587 * 1 2 3 31 31 H 1.09004 * 109.46791 * 150.27813 * 1 2 3 32 32 H 1.08008 * 126.07139 * 0.03181 * 3 2 1 33 33 H 0.97002 * 120.00145 * 179.69455 * 5 4 3 34 34 H 1.07997 * 119.71331 * 0.02562 * 9 8 6 35 35 H 1.08002 * 120.12494 * 0.02562 * 12 11 10 36 36 H 1.07997 * 119.49460 * 180.02562 * 13 12 11 37 37 H 1.08001 * 119.51175 * 179.72411 * 14 13 12 38 38 H 1.08004 * 120.15641 * 179.97438 * 15 14 13 39 39 H 1.09005 * 109.47083 * 209.99945 * 19 18 4 40 40 H 1.08996 * 109.46933 * 329.99438 * 19 18 4 41 41 H 0.97001 * 120.00111 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6194 0.7147 -0.0037 5 7 4.7494 1.5301 -0.0080 6 6 4.6127 2.8709 -0.0150 7 8 3.5041 3.3687 -0.0170 8 6 5.8142 3.7379 -0.0190 9 6 5.6657 5.1362 -0.0257 10 7 6.7189 5.9194 -0.0298 11 6 7.9454 5.3847 -0.0281 12 6 9.0902 6.1997 -0.0330 13 6 10.3255 5.6290 -0.0317 14 6 10.4766 4.2425 -0.0250 15 6 9.3934 3.4204 -0.0202 16 6 8.0981 3.9729 -0.0213 17 7 7.0177 3.1913 -0.0162 18 7 3.6088 -0.6434 0.0033 19 6 4.7859 -1.5157 0.0075 20 6 5.1900 -1.8075 1.4297 21 1 4.6262 -1.3857 2.2485 22 6 6.2788 -2.6137 1.6854 23 7 6.9645 -3.1285 0.6882 24 14 6.7801 -2.9747 3.4482 25 1 5.8528 -2.2818 4.3784 26 1 6.7204 -4.4387 3.6899 27 1 8.1653 -2.4912 3.6779 28 7 2.2720 -1.0615 0.0055 29 1 -0.3632 0.0049 1.0276 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3633 -0.8925 -0.5095 32 1 1.9874 2.1598 0.0005 33 1 5.6343 1.1328 -0.0059 34 1 4.6764 5.5694 -0.0274 35 1 8.9900 7.2751 -0.0377 36 1 11.2025 6.2594 -0.0350 37 1 11.4685 3.8154 -0.0287 38 1 9.5258 2.3485 -0.0155 39 1 4.5477 -2.4498 -0.5015 40 1 5.6075 -1.0197 -0.5093 41 1 7.7307 -3.6954 0.8681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058283050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:18 Heat of formation + Delta-G solvation = 116.492301 kcal Electronic energy + Delta-G solvation = -27614.006643 eV Core-core repulsion = 23689.061492 eV Total energy + Delta-G solvation = -3924.945151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.128 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83622 -40.80164 -39.25527 -37.58350 -35.35798 -34.68764 -33.77217 -32.07727 -31.38035 -30.93080 -29.16817 -28.32438 -26.13299 -26.00873 -24.86449 -22.96967 -22.56756 -22.07541 -19.97106 -19.74676 -18.71545 -18.45963 -17.49069 -16.83936 -16.44724 -15.94448 -15.83094 -15.45845 -15.01444 -14.88124 -14.68816 -14.47017 -14.15225 -13.99320 -13.92183 -12.91320 -12.78372 -12.52313 -12.29705 -12.26793 -12.11017 -12.10617 -12.03272 -11.96932 -11.79779 -11.57870 -11.06990 -10.91540 -10.46099 -10.41688 -10.29822 -9.79265 -9.67559 -9.41568 -9.33135 -8.94618 -8.71471 -7.93326 -7.49784 -6.32523 -4.40549 -0.31384 0.09990 1.49846 2.03028 2.55784 2.61561 3.13048 3.15523 3.24045 3.30168 3.47217 3.54757 3.73477 3.75665 3.77205 3.93572 4.25120 4.40838 4.48623 4.63559 4.77317 4.88931 5.01075 5.05383 5.33705 5.47578 5.52684 5.60460 5.71799 5.81859 5.98088 6.03312 6.12197 6.14283 6.20937 6.29950 6.35111 6.59465 6.83790 6.84046 7.02983 7.27869 7.47470 7.54454 7.60904 7.78177 7.81401 8.16396 8.59867 8.69980 9.26866 10.74828 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.003998 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.508528 B = 7002.466695 C = 9726.669318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.289 4.289 4 C 0.296 3.704 5 N -0.615 5.615 6 C 0.581 3.419 7 O -0.500 6.500 8 C 0.065 3.935 9 C 0.132 3.868 10 N -0.426 5.426 11 C 0.095 3.905 12 C -0.092 4.092 13 C -0.086 4.086 14 C -0.104 4.104 15 C -0.069 4.069 16 C 0.078 3.922 17 N -0.386 5.386 18 N -0.343 5.343 19 C 0.256 3.744 20 C -0.539 4.539 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.281 1.281 28 N -0.280 5.280 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.426 0.574 34 H 0.191 0.809 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 17.527 -2.958 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.321 4.321 4 C 0.074 3.926 5 N -0.262 5.262 6 C 0.364 3.636 7 O -0.373 6.373 8 C -0.092 4.092 9 C -0.043 4.043 10 N -0.139 5.139 11 C -0.030 4.030 12 C -0.111 4.111 13 C -0.106 4.106 14 C -0.124 4.124 15 C -0.089 4.089 16 C -0.049 4.049 17 N -0.104 5.104 18 N -0.129 5.129 19 C 0.138 3.862 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 N -0.105 5.105 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.265 0.735 34 H 0.207 0.793 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.166 0.834 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.913 16.436 -3.006 17.416 hybrid contribution 1.088 0.177 0.987 1.480 sum 6.001 16.613 -2.019 17.779 Atomic orbital electron populations 1.20028 0.87477 1.02389 1.02205 1.22021 0.96576 0.90934 1.01973 1.21277 0.88960 1.00546 1.21306 1.17987 0.87674 0.83440 1.03495 1.42468 1.09192 1.05029 1.69477 1.17418 0.87323 0.81173 0.77672 1.90745 1.24416 1.73904 1.48240 1.22210 0.92078 0.93989 1.00883 1.23971 0.99529 0.89368 0.91428 1.68851 0.97828 1.37603 1.09598 1.19814 0.93098 0.91898 0.98225 1.20805 0.90050 1.00347 0.99945 1.21128 0.97562 0.95245 0.96677 1.21073 0.99456 0.93378 0.98525 1.21035 0.89177 1.01685 0.96963 1.19603 0.93633 0.90520 1.01102 1.68558 0.97883 1.38640 1.05319 1.49538 1.06533 1.01978 1.54835 1.19662 0.77799 0.89718 0.99006 1.21370 1.13353 1.31743 0.91297 0.91649 1.24917 0.95664 0.94868 0.98142 1.69929 1.19200 1.32534 1.31036 0.86316 0.78374 0.78389 0.83735 1.19567 1.20519 1.20646 1.77348 0.86114 1.21827 1.25227 0.91269 0.91078 0.91520 0.81963 0.73491 0.79268 0.84001 0.84445 0.84287 0.83423 0.92433 0.93712 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.53 16 2 C 0.05 0.99 7.20 -82.46 -0.59 0.40 16 3 C -0.29 -5.86 9.58 -39.78 -0.38 -6.24 16 4 C 0.30 6.34 7.68 -152.77 -1.17 5.17 16 5 N -0.62 -11.52 5.40 -12.11 -0.07 -11.59 16 6 C 0.58 9.69 7.78 -12.18 -0.09 9.60 16 7 O -0.50 -8.76 13.45 5.34 0.07 -8.69 16 8 C 0.06 0.94 6.76 -82.74 -0.56 0.38 16 9 C 0.13 1.66 10.75 -16.90 -0.18 1.47 16 10 N -0.43 -5.33 10.45 -10.52 -0.11 -5.44 16 11 C 0.09 1.14 6.59 -84.70 -0.56 0.58 16 12 C -0.09 -0.81 9.98 -39.49 -0.39 -1.20 16 13 C -0.09 -0.58 9.95 -39.90 -0.40 -0.98 16 14 C -0.10 -0.79 9.95 -39.93 -0.40 -1.18 16 15 C -0.07 -0.72 9.99 -39.41 -0.39 -1.12 16 16 C 0.08 1.01 6.60 -84.79 -0.56 0.45 16 17 N -0.39 -5.70 9.64 -7.39 -0.07 -5.77 16 18 N -0.34 -8.14 3.62 -61.45 -0.22 -8.36 16 19 C 0.26 6.49 6.02 -5.19 -0.03 6.46 16 20 C -0.54 -14.68 9.39 -34.44 -0.32 -15.00 16 21 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 22 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 23 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 24 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 N -0.28 -6.51 12.56 33.64 0.42 -6.09 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.16 3.11 5.83 -52.48 -0.31 2.80 16 33 H 0.43 7.92 7.32 -40.82 -0.30 7.62 16 34 H 0.19 1.96 7.62 -52.49 -0.40 1.56 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.06 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.05 1.11 7.52 -51.93 -0.39 0.72 16 41 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -32.03 362.59 -8.88 -40.91 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.32 Total: 7.43 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -5.76 Total: -0.03 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.69 Total: -60.97 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.03 -8.88 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058283050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.402 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds