Wall clock time and date at job start Tue Mar 31 2020 04:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 116.99486 * 2 1 4 4 C 1.38660 * 120.04660 * 0.02562 * 3 2 1 5 5 C 1.38228 * 120.08896 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.91221 * 180.02562 * 5 4 3 7 7 C 1.50708 * 109.47127 * 89.99900 * 6 5 4 8 8 O 1.21291 * 119.99895 * 359.72985 * 7 6 5 9 9 N 1.34771 * 119.99746 * 180.02562 * 7 6 5 10 10 C 1.37105 * 119.99499 * 179.72926 * 9 7 6 11 11 H 1.07997 * 120.00124 * 140.25328 * 10 9 7 12 12 C 1.38948 * 119.99775 * 320.24765 * 10 9 7 13 13 N 1.31412 * 119.99822 * 161.20791 * 12 10 9 14 14 Si 1.86797 * 120.00279 * 341.20237 * 12 10 9 15 15 H 1.48504 * 109.46780 * 93.62942 * 14 12 10 16 16 H 1.48501 * 109.47442 * 213.63239 * 14 12 10 17 17 H 1.48503 * 109.47184 * 333.63741 * 14 12 10 18 18 C 1.46497 * 120.00718 * 359.72084 * 9 7 6 19 19 C 1.52992 * 117.50315 * 182.39612 * 18 9 7 20 20 C 1.53003 * 117.49880 * 113.73475 * 18 9 7 21 21 C 1.38230 * 120.18023 * 0.29083 * 5 4 3 22 22 C 1.38661 * 120.08582 * 359.45793 * 21 5 4 23 23 O 1.36000 * 120.04661 * 180.27301 * 22 21 5 24 24 C 1.42907 * 116.99949 * 0.24769 * 23 22 21 25 25 C 1.38972 * 119.91238 * 0.51747 * 22 21 5 26 26 O 1.36095 * 120.09455 * 179.73107 * 25 22 21 27 27 C 1.42901 * 117.00306 * 270.02886 * 26 25 22 28 28 H 1.09000 * 109.47218 * 299.99687 * 1 2 3 29 29 H 1.08992 * 109.47309 * 59.99901 * 1 2 3 30 30 H 1.09001 * 109.46646 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.95929 * 0.02562 * 4 3 2 32 32 H 1.09000 * 109.47128 * 330.00076 * 6 5 4 33 33 H 1.08996 * 109.47667 * 209.99832 * 6 5 4 34 34 H 0.97000 * 119.99830 * 179.97438 * 13 12 10 35 35 H 1.09002 * 115.54546 * 328.07534 * 18 9 7 36 36 H 1.09000 * 117.49994 * 0.02562 * 19 18 9 37 37 H 1.09010 * 117.49933 * 145.02129 * 19 18 9 38 38 H 1.08994 * 117.50327 * 214.98477 * 20 18 9 39 39 H 1.09003 * 117.49764 * 359.97438 * 20 18 9 40 40 H 1.08004 * 119.95570 * 179.72237 * 21 5 4 41 41 H 1.08994 * 109.47205 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.46769 * 300.00244 * 24 23 22 43 43 H 1.09002 * 109.47130 * 59.99892 * 24 23 22 44 44 H 1.09001 * 109.47398 * 179.97438 * 27 26 25 45 45 H 1.09000 * 109.46466 * 299.99630 * 27 26 25 46 46 H 1.08996 * 109.47450 * 59.99020 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2920 2.3753 0.0005 5 6 1.9185 3.6074 0.0011 6 6 1.0947 4.8693 0.0022 7 6 0.8207 5.2891 1.4235 8 8 1.2478 4.6257 2.3448 9 7 0.0961 6.3982 1.6707 10 6 -0.1579 6.7769 2.9637 11 1 -0.1265 7.8214 3.2366 12 6 -0.4557 5.8169 3.9231 13 7 -0.3370 6.1049 5.1998 14 14 -1.0248 4.1169 3.3981 15 1 0.1452 3.2058 3.3192 16 1 -1.9955 3.5912 4.3914 17 1 -1.6763 4.2023 2.0664 18 6 -0.4201 7.1992 0.5581 19 6 -1.1874 8.4769 0.9037 20 6 -1.9377 7.2535 0.3711 21 6 3.2986 3.6852 -0.0050 22 6 4.0602 2.5265 -0.0003 23 8 5.4180 2.6041 -0.0006 24 6 5.9931 3.9123 -0.0005 25 6 3.4342 1.2858 -0.0003 26 8 4.1781 0.1461 -0.0013 27 6 4.5324 -0.3964 -1.2749 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2135 2.3187 0.0014 32 1 0.1507 4.6874 -0.5113 33 1 1.6411 5.6604 -0.5112 34 1 -0.5453 5.4348 5.8695 35 1 0.1983 7.2106 -0.3395 36 1 -1.3079 8.7218 1.9590 37 1 -1.0741 9.3290 0.2333 38 1 -2.3177 7.3012 -0.6494 39 1 -2.5520 6.6929 1.0757 40 1 3.7843 4.6499 -0.0091 41 1 7.0800 3.8314 -0.0004 42 1 5.6686 4.4518 -0.8902 43 1 5.6691 4.4515 0.8897 44 1 5.1235 -1.3011 -1.1328 45 1 3.6269 -0.6373 -1.8318 46 1 5.1173 0.3357 -1.8317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058290116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:58 Heat of formation + Delta-G solvation = -65.268271 kcal Electronic energy + Delta-G solvation = -30306.186840 eV Core-core repulsion = 26164.610111 eV Total energy + Delta-G solvation = -4141.576730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.72313 -39.22890 -38.90753 -37.63073 -36.85824 -36.03438 -32.97063 -31.91180 -31.25002 -29.52752 -28.35764 -27.79176 -27.07787 -25.88981 -24.36521 -22.14749 -21.89666 -21.74868 -21.23196 -19.38704 -18.24668 -17.18788 -17.13158 -17.04301 -16.45712 -16.26970 -16.06903 -15.46045 -15.38859 -14.93113 -14.68171 -14.49345 -14.36245 -14.18661 -13.95181 -13.39044 -13.31232 -12.99817 -12.55969 -12.43783 -12.32498 -12.18486 -11.73945 -11.66573 -11.54264 -11.47601 -11.45938 -11.19075 -10.87219 -10.76840 -10.42004 -10.37600 -10.07033 -9.99497 -9.85035 -9.65125 -8.58887 -8.50468 -8.01651 -8.00793 -7.53626 -6.20571 -3.97680 1.32195 1.53373 2.88758 3.23664 3.42166 3.56996 3.68189 3.69762 3.77931 3.99137 4.34783 4.44128 4.62889 4.80812 4.99459 5.11969 5.12785 5.14492 5.18208 5.20470 5.24672 5.25360 5.37484 5.41463 5.44057 5.48697 5.51187 5.53133 5.56009 5.57957 5.63354 5.72102 5.79576 5.81423 6.09659 6.10997 6.26960 6.29545 6.50076 6.61414 6.71701 6.79403 7.12361 7.32681 7.81003 7.81989 7.91423 8.72747 8.86627 9.39716 9.75930 10.83205 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.004227 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.984916 B = 6622.786730 C = 7210.404340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.149 3.851 4 C -0.220 4.220 5 C 0.028 3.972 6 C -0.102 4.102 7 C 0.448 3.552 8 O -0.529 6.529 9 N -0.434 5.434 10 C -0.350 4.350 11 H 0.097 0.903 12 C 0.091 3.909 13 N -0.865 5.865 14 Si 0.914 3.086 15 H -0.246 1.246 16 H -0.314 1.314 17 H -0.284 1.284 18 C 0.062 3.938 19 C -0.172 4.172 20 C -0.199 4.199 21 C -0.216 4.216 22 C 0.150 3.850 23 O -0.306 6.306 24 C 0.025 3.975 25 C 0.019 3.981 26 O -0.312 6.312 27 C 0.036 3.964 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.272 0.728 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -5.716 -17.106 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.103 3.897 4 C -0.239 4.239 5 C 0.027 3.973 6 C -0.142 4.142 7 C 0.238 3.762 8 O -0.411 6.411 9 N -0.155 5.155 10 C -0.475 4.475 11 H 0.115 0.885 12 C -0.118 4.118 13 N -0.500 5.500 14 Si 0.746 3.254 15 H -0.172 1.172 16 H -0.245 1.245 17 H -0.210 1.210 18 C -0.044 4.044 19 C -0.209 4.209 20 C -0.238 4.238 21 C -0.235 4.235 22 C 0.103 3.897 23 O -0.219 6.219 24 C -0.070 4.070 25 C -0.026 4.026 26 O -0.228 6.228 27 C -0.059 4.059 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.152 0.848 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.915 -6.527 -16.275 18.211 hybrid contribution -0.840 -0.129 -0.335 0.914 sum 4.075 -6.656 -16.610 18.352 Atomic orbital electron populations 1.23120 0.78340 1.03850 1.01807 1.86098 1.21274 1.26053 1.88405 1.18839 0.90530 0.84743 0.95595 1.20875 1.00035 0.91198 1.11770 1.18978 0.92667 0.93636 0.91989 1.20744 1.00371 0.95255 0.97876 1.19988 0.82116 0.84500 0.89622 1.90575 1.52587 1.52806 1.45128 1.43136 1.44716 1.22544 1.05115 1.18771 1.51774 0.95502 0.81487 0.88543 1.25298 0.92709 0.99453 0.94374 1.69731 1.43469 1.36283 1.00533 0.86333 0.76915 0.85326 0.76827 1.17197 1.24477 1.21033 1.21825 0.92003 0.98067 0.92480 1.23132 1.03677 0.90871 1.03256 1.23286 0.96223 1.03038 1.01272 1.20859 0.93856 0.97175 1.11596 1.18827 0.82725 0.92537 0.95571 1.86103 1.16754 1.30630 1.88403 1.23114 0.98915 0.83149 1.01852 1.16833 0.86219 0.84508 1.15055 1.86176 1.70132 1.38125 1.28354 1.22933 0.99263 0.98274 0.85443 0.92275 0.92568 0.88133 0.85189 0.88960 0.88726 0.91781 0.87133 0.87092 0.89414 0.89494 0.88615 0.84832 0.88269 0.92637 0.92045 0.89402 0.94014 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.89 10.28 -34.32 -0.35 -5.24 16 3 C 0.15 2.62 6.70 -39.15 -0.26 2.35 16 4 C -0.22 -3.84 8.69 -39.43 -0.34 -4.18 16 5 C 0.03 0.50 4.37 -104.63 -0.46 0.04 16 6 C -0.10 -1.74 4.46 -29.03 -0.13 -1.87 16 7 C 0.45 10.30 5.88 -10.98 -0.06 10.24 16 8 O -0.53 -14.50 10.92 5.55 0.06 -14.44 16 9 N -0.43 -10.06 2.56 -107.73 -0.28 -10.34 16 10 C -0.35 -9.62 8.77 -14.93 -0.13 -9.75 16 11 H 0.10 2.76 6.95 -52.49 -0.36 2.40 16 12 C 0.09 2.67 4.88 -17.47 -0.09 2.58 16 13 N -0.87 -26.50 13.96 55.50 0.77 -25.72 16 14 Si 0.91 24.52 24.59 -169.99 -4.18 20.34 16 15 H -0.25 -7.02 6.09 56.52 0.34 -6.68 16 16 H -0.31 -8.38 7.11 56.52 0.40 -7.98 16 17 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 18 C 0.06 1.10 5.85 -67.93 -0.40 0.70 16 19 C -0.17 -2.81 9.80 -26.70 -0.26 -3.07 16 20 C -0.20 -3.22 10.37 -26.69 -0.28 -3.50 16 21 C -0.22 -3.60 8.68 -39.43 -0.34 -3.94 16 22 C 0.15 2.55 6.70 -39.15 -0.26 2.29 16 23 O -0.31 -4.70 10.28 -34.32 -0.35 -5.06 16 24 C 0.02 0.27 9.81 101.05 0.99 1.26 16 25 C 0.02 0.34 5.75 -39.03 -0.22 0.12 16 26 O -0.31 -5.37 9.98 -45.30 -0.45 -5.82 16 27 C 0.04 0.45 11.13 101.05 1.13 1.57 16 28 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 29 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.13 2.10 6.29 -52.49 -0.33 1.77 16 32 H 0.09 1.38 8.05 -51.93 -0.42 0.96 16 33 H 0.09 1.31 7.50 -51.93 -0.39 0.92 16 34 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 35 H 0.11 1.57 6.99 -51.93 -0.36 1.21 16 36 H 0.11 2.11 6.48 -51.93 -0.34 1.78 16 37 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.13 1.95 6.29 -52.48 -0.33 1.62 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 43 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -36.50 377.18 -5.92 -42.42 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.70 Total: 2.05 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.13 Total: -3.88 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.50 Total: -36.06 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.10 Total: -30.56 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -4.18 Total: 20.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.50 -5.92 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058290116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.847 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds