Wall clock time and date at job start Tue Mar 31 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42095 * 110.54033 * 2 1 4 4 O 1.42101 * 110.54435 * 136.75106 * 2 1 3 5 5 C 1.76195 * 104.45035 * 248.37513 * 2 1 3 6 6 C 1.38363 * 119.85748 * 269.72710 * 5 2 1 7 7 C 1.37958 * 120.14962 * 179.72292 * 6 5 2 8 8 C 1.39580 * 119.84539 * 0.54661 * 7 6 5 9 9 C 1.47850 * 120.13700 * 179.70451 * 8 7 6 10 10 O 1.21551 * 119.99504 * 150.23396 * 9 8 7 11 11 N 1.34770 * 120.00260 * 330.22753 * 9 8 7 12 12 C 1.46505 * 119.99961 * 6.11690 * 11 9 8 13 13 C 1.50705 * 109.46906 * 98.17967 * 12 11 9 14 14 H 1.08001 * 120.00093 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99945 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99956 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00076 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46963 * 60.00115 * 17 15 13 19 19 H 1.48499 * 109.46958 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47054 * 300.00140 * 17 15 13 21 21 C 1.46498 * 120.00554 * 186.11443 * 11 9 8 22 22 C 1.53000 * 109.47216 * 91.05785 * 21 11 9 23 23 C 1.47199 * 109.47475 * 180.02562 * 22 21 11 24 24 N 9.61987 * 155.07732 * 177.30037 * 5 1 2 25 25 C 1.39572 * 119.71634 * 359.73091 * 8 7 6 26 26 C 1.37955 * 119.85161 * 359.97438 * 25 8 7 27 27 H 1.09000 * 109.46811 * 171.62336 * 1 2 3 28 28 H 1.08989 * 109.47262 * 51.62476 * 1 2 3 29 29 H 1.09003 * 109.47246 * 291.62211 * 1 2 3 30 30 H 1.08004 * 119.91767 * 359.97438 * 6 5 2 31 31 H 1.07997 * 120.07460 * 180.25154 * 7 6 5 32 32 H 1.08995 * 109.47015 * 218.17688 * 12 11 9 33 33 H 1.08996 * 109.47384 * 338.18311 * 12 11 9 34 34 H 0.96996 * 119.99942 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47620 * 211.06139 * 21 11 9 36 36 H 1.09006 * 109.46763 * 331.06333 * 21 11 9 37 37 H 1.09000 * 109.47115 * 300.00663 * 22 21 11 38 38 H 1.08997 * 109.47141 * 60.00072 * 22 21 11 39 39 H 1.07999 * 120.07570 * 179.97438 * 25 8 7 40 40 H 1.08003 * 119.92585 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6288 -1.5861 6 6 2.4312 -1.9896 -1.7627 7 6 2.7699 -2.4890 -3.0033 8 6 2.9447 -1.6170 -4.0790 9 6 3.3141 -2.1446 -5.4099 10 8 2.9597 -1.5602 -6.4150 11 7 4.0438 -3.2734 -5.5085 12 6 4.3573 -4.0503 -4.3066 13 6 3.3874 -5.1971 -4.1827 14 1 2.6150 -5.3338 -4.9251 15 6 3.4867 -6.0724 -3.1220 16 7 4.4276 -5.9063 -2.2182 17 14 2.2849 -7.4943 -2.9688 18 1 2.3952 -8.3667 -4.1654 19 1 2.6034 -8.2825 -1.7511 20 1 0.9014 -6.9644 -2.8683 21 6 4.5236 -3.7236 -6.8174 22 6 5.9111 -3.1355 -7.0819 23 6 6.3930 -3.5873 -8.3973 24 7 6.7652 -3.9366 -9.4121 25 6 2.7699 -0.2448 -3.8929 26 6 2.4252 0.2409 -2.6485 27 1 -0.3633 -1.0167 -0.1497 28 1 -0.3633 0.6379 -0.8056 29 1 -0.3634 0.3787 0.9554 30 1 2.3002 -2.6626 -0.9282 31 1 2.9041 -3.5518 -3.1406 32 1 5.3727 -4.4396 -4.3803 33 1 4.2765 -3.4097 -3.4285 34 1 4.4972 -6.5218 -1.4718 35 1 4.5822 -4.8119 -6.8284 36 1 3.8335 -3.3890 -7.5920 37 1 5.8526 -2.0471 -7.0709 38 1 6.6012 -3.4700 -6.3073 39 1 2.9041 0.4352 -4.7211 40 1 2.2900 1.3025 -2.5030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058299183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:12 Heat of formation + Delta-G solvation = -24.696387 kcal Electronic energy + Delta-G solvation = -26477.094974 eV Core-core repulsion = 22578.771439 eV Total energy + Delta-G solvation = -3898.323535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17491 -38.12166 -37.09153 -36.70846 -35.92889 -35.59239 -33.29514 -32.03018 -30.90712 -30.33649 -29.60373 -27.63922 -25.03733 -23.63070 -22.59162 -22.39416 -19.27759 -19.02188 -17.66185 -17.56112 -16.95105 -16.70929 -16.22306 -16.08730 -15.62039 -14.92577 -14.81249 -14.65821 -14.43237 -14.14744 -13.93358 -13.49274 -13.41025 -13.33012 -13.26599 -12.71502 -12.64223 -12.49589 -12.35073 -12.25391 -12.07619 -11.99353 -11.71959 -11.55987 -11.22310 -11.14312 -11.04498 -10.75570 -10.72171 -10.44643 -10.11589 -10.02650 -9.45846 -9.05920 -8.90756 -8.50269 -8.10946 -6.45150 -4.56721 0.02295 0.74630 1.58959 2.76313 2.83888 2.89348 3.04193 3.10240 3.17869 3.19935 3.47289 3.76059 4.05036 4.09374 4.13445 4.26105 4.61830 4.77614 4.85884 4.94135 5.07398 5.12378 5.22906 5.25913 5.47115 5.58325 5.59777 5.67603 5.92320 5.95389 6.15765 6.18077 6.29346 6.39588 6.53143 6.71856 6.91830 7.13407 7.20830 7.48892 7.65064 7.70898 7.96104 8.47657 8.63709 9.12702 10.59260 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.004173 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.756673 B = 6708.935606 C = 8831.750313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.500 3.500 3 O -0.943 6.943 4 O -0.935 6.935 5 C -0.646 4.646 6 C -0.037 4.037 7 C -0.115 4.115 8 C -0.079 4.079 9 C 0.554 3.446 10 O -0.559 6.559 11 N -0.585 5.585 12 C 0.203 3.797 13 C -0.554 4.554 14 H 0.068 0.932 15 C 0.072 3.928 16 N -0.875 5.875 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.125 3.875 22 C -0.046 4.046 23 C 0.221 3.779 24 N -0.448 5.448 25 C -0.092 4.092 26 C -0.051 4.051 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.144 0.856 31 H 0.213 0.787 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.273 0.727 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 9.351 4.008 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.681 3.319 3 O -0.940 6.940 4 O -0.932 6.932 5 C -0.734 4.734 6 C -0.056 4.056 7 C -0.133 4.133 8 C -0.082 4.082 9 C 0.343 3.657 10 O -0.439 6.439 11 N -0.313 5.313 12 C 0.084 3.916 13 C -0.592 4.592 14 H 0.086 0.914 15 C -0.135 4.135 16 N -0.511 5.511 17 Si 0.724 3.276 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.001 4.001 22 C -0.087 4.087 23 C -0.097 4.097 24 N -0.125 5.125 25 C -0.111 4.111 26 C -0.070 4.070 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.162 0.838 31 H 0.229 0.771 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.876 9.277 2.803 10.849 hybrid contribution -1.114 -1.042 -0.096 1.528 sum -5.989 8.235 2.708 10.537 Atomic orbital electron populations 1.30232 1.26165 1.12221 1.11481 1.05083 0.77708 0.74552 0.74596 1.93564 1.77316 1.36799 1.86336 1.93604 1.77069 1.61418 1.61137 1.30546 1.18002 1.03449 1.21369 1.21052 0.93411 0.92533 0.98581 1.23726 0.92545 1.06067 0.90945 1.20308 0.99461 0.94305 0.94170 1.18326 0.78371 0.80680 0.88365 1.90713 1.55500 1.60155 1.37565 1.48060 1.50628 1.23340 1.09320 1.20457 0.97591 0.91253 0.82330 1.21381 1.16087 1.11312 1.10444 0.91430 1.25000 0.95612 0.97603 0.95270 1.69900 1.31392 1.37483 1.12342 0.86545 0.81238 0.81908 0.77926 1.19888 1.20829 1.19759 1.21166 0.92135 1.00444 0.86314 1.19757 0.99225 1.02866 0.86845 1.29046 0.93078 0.92978 0.94602 1.81182 1.09530 1.09536 1.12285 1.21246 0.98215 0.94356 0.97311 1.20699 0.95893 0.99008 0.91449 0.84826 0.85056 0.85310 0.83840 0.77149 0.94193 0.91244 0.91741 0.88807 0.89641 0.87430 0.86843 0.84721 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.25 10.80 101.05 1.09 -3.16 16 2 S 2.50 27.54 5.80 -107.50 -0.62 26.92 16 3 O -0.94 -12.66 17.11 -57.54 -0.98 -13.65 16 4 O -0.94 -13.67 17.10 -57.54 -0.98 -14.66 16 5 C -0.65 -8.69 5.66 -39.49 -0.22 -8.91 16 6 C -0.04 -0.58 9.45 -39.64 -0.37 -0.95 16 7 C -0.12 -2.05 7.48 -39.18 -0.29 -2.34 16 8 C -0.08 -1.37 5.58 -104.97 -0.59 -1.95 16 9 C 0.55 10.13 7.46 -12.33 -0.09 10.03 16 10 O -0.56 -11.01 16.25 5.32 0.09 -10.93 16 11 N -0.58 -10.27 2.46 -176.17 -0.43 -10.70 16 12 C 0.20 4.02 4.65 -5.19 -0.02 3.99 16 13 C -0.55 -12.23 7.47 -34.44 -0.26 -12.49 16 14 H 0.07 1.53 7.81 -52.49 -0.41 1.12 16 15 C 0.07 1.64 5.33 -17.82 -0.09 1.54 16 16 N -0.88 -21.04 13.29 55.43 0.74 -20.31 16 17 Si 0.90 18.33 29.54 -169.99 -5.02 13.31 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 21 C 0.12 1.87 5.43 -4.04 -0.02 1.85 16 22 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 23 C 0.22 3.06 15.43 -20.76 -0.32 2.74 16 24 N -0.45 -7.28 18.54 42.15 0.78 -6.49 16 25 C -0.09 -1.36 9.60 -39.19 -0.38 -1.73 16 26 C -0.05 -0.68 9.45 -39.64 -0.37 -1.05 16 27 H 0.13 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.14 2.13 7.55 -52.48 -0.40 1.73 16 31 H 0.21 4.22 3.02 -52.49 -0.16 4.06 16 32 H 0.04 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.07 1.43 4.08 -51.95 -0.21 1.22 16 34 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 35 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 36 H 0.09 1.31 7.32 -51.93 -0.38 0.93 16 37 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.13 1.81 7.92 -52.49 -0.42 1.40 16 40 H 0.14 1.46 7.56 -52.48 -0.40 1.06 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -31.13 361.71 -7.58 -38.70 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.46 Total: 5.52 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -2.13 Total: -13.17 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 1.08 Total: -37.50 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.88 Total: -39.23 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Atomic # 16 Polarization: 27.54 SS G_CDS: -0.62 Total: 26.92 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.13 -7.58 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058299183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.008 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds