Wall clock time and date at job start Tue Mar 31 2020 04:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33388 * 125.20349 * 2 1 4 4 C 1.38428 * 114.92223 * 179.75114 * 3 2 1 5 5 C 1.33394 * 114.91853 * 0.42686 * 4 3 2 6 6 C 1.50700 * 125.20349 * 179.85935 * 5 4 3 7 7 H 1.09000 * 109.46693 * 339.72221 * 6 5 4 8 8 C 1.52994 * 109.46940 * 99.72289 * 6 5 4 9 9 N 1.46904 * 109.47245 * 219.72194 * 6 5 4 10 10 C 1.46901 * 110.99918 * 56.04786 * 9 6 5 11 11 C 1.46897 * 110.99976 * 179.97438 * 9 6 5 12 12 C 1.53001 * 109.46924 * 170.00178 * 11 9 6 13 13 C 1.50699 * 109.47119 * 180.02562 * 12 11 9 14 14 O 1.21299 * 119.99799 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00379 * 179.97438 * 13 12 11 16 16 C 1.37093 * 120.00323 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00308 * 17.71577 * 16 15 13 18 18 C 1.38954 * 119.99829 * 197.72214 * 16 15 13 19 19 N 1.31410 * 120.00045 * 21.39543 * 18 16 15 20 20 Si 1.86800 * 119.99693 * 201.39553 * 18 16 15 21 21 H 1.48504 * 109.47108 * 89.99716 * 20 18 16 22 22 H 1.48496 * 109.47306 * 209.99871 * 20 18 16 23 23 H 1.48504 * 109.47196 * 329.99861 * 20 18 16 24 24 C 1.46499 * 119.99758 * 359.97438 * 15 13 12 25 25 C 1.47202 * 109.47243 * 84.23240 * 24 15 13 26 26 N 9.48741 * 125.33606 * 223.26281 * 2 1 3 27 27 S 1.75883 * 109.59324 * 359.60110 * 5 4 3 28 28 H 1.09001 * 109.46994 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46808 * 299.99682 * 1 2 3 30 30 H 1.08996 * 109.47091 * 59.99702 * 1 2 3 31 31 H 1.07994 * 122.53915 * 359.97438 * 3 2 1 32 32 H 1.07993 * 122.54703 * 180.27448 * 4 3 2 33 33 H 1.09001 * 109.47295 * 299.99909 * 8 6 5 34 34 H 1.09000 * 109.47483 * 60.00416 * 8 6 5 35 35 H 1.08998 * 109.47101 * 180.02562 * 8 6 5 36 36 H 1.09002 * 109.47559 * 183.95568 * 10 9 6 37 37 H 1.09003 * 109.47397 * 63.94899 * 10 9 6 38 38 H 1.09003 * 109.47039 * 303.95108 * 10 9 6 39 39 H 1.09004 * 109.46991 * 290.00030 * 11 9 6 40 40 H 1.08997 * 109.47177 * 49.99903 * 11 9 6 41 41 H 1.09004 * 109.47166 * 299.99745 * 12 11 9 42 42 H 1.08997 * 109.47418 * 59.99872 * 12 11 9 43 43 H 0.97004 * 119.99799 * 179.97438 * 19 18 16 44 44 H 1.08993 * 109.47356 * 204.23571 * 24 15 13 45 45 H 1.09000 * 109.47282 * 324.23362 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 0.0055 5 6 3.9751 -0.4478 0.0009 6 6 5.3861 -0.9771 0.0022 7 1 6.0657 -0.2007 -0.3490 8 6 5.7744 -1.3903 1.4232 9 7 5.4726 -2.1428 -0.8876 10 6 5.0165 -1.8057 -2.2427 11 6 6.8371 -2.6864 -0.9120 12 6 6.8373 -4.0314 -1.6412 13 6 8.2369 -4.5894 -1.6657 14 8 9.1450 -3.9721 -1.1501 15 7 8.4797 -5.7747 -2.2595 16 6 9.7529 -6.2825 -2.2813 17 1 10.4979 -5.9019 -1.5983 18 6 10.0849 -7.2869 -3.1823 19 7 9.3614 -7.4639 -4.2649 20 14 11.5598 -8.3854 -2.8545 21 1 11.1291 -9.5719 -2.0721 22 1 12.1433 -8.8292 -4.1459 23 1 12.5795 -7.6285 -2.0847 24 6 7.3827 -6.5209 -2.8807 25 6 7.1627 -6.0225 -4.2482 26 7 6.9942 -5.6361 -5.3043 27 16 2.5210 -1.4372 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8669 2.0894 -0.0004 32 1 4.3721 1.6349 0.0104 33 1 5.7102 -0.5254 2.0834 34 1 5.0948 -2.1668 1.7744 35 1 6.7951 -1.7728 1.4242 36 1 5.0243 -2.7024 -2.8624 37 1 5.6827 -1.0592 -2.6752 38 1 4.0037 -1.4053 -2.1961 39 1 7.4959 -1.9910 -1.4321 40 1 7.1905 -2.8268 0.1095 41 1 6.1784 -4.7268 -1.1211 42 1 6.4838 -3.8910 -2.6627 43 1 9.5935 -8.1648 -4.8941 44 1 7.6382 -7.5799 -2.9167 45 1 6.4738 -6.3863 -2.2944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058342387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:14 Heat of formation + Delta-G solvation = 39.741793 kcal Electronic energy + Delta-G solvation = -26252.319217 eV Core-core repulsion = 22590.341687 eV Total energy + Delta-G solvation = -3661.977530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.25259 -38.58749 -37.27798 -35.76308 -34.34102 -33.07578 -31.89972 -30.95073 -29.99944 -27.47183 -26.90771 -25.65859 -24.70155 -23.45960 -22.44766 -20.50374 -19.17495 -18.80512 -17.90562 -17.06640 -16.49691 -16.26218 -15.60859 -15.54153 -15.00526 -14.45417 -14.38747 -14.16165 -14.05011 -13.94268 -13.44377 -13.30030 -12.97089 -12.82945 -12.55828 -12.49767 -12.30740 -12.03382 -11.97603 -11.92434 -11.68784 -11.60146 -11.45133 -11.26486 -11.24460 -11.19937 -11.02284 -10.70146 -10.57245 -10.40160 -10.37064 -10.26139 -9.26387 -8.60605 -8.53756 -8.44960 -8.31229 -8.04649 -6.50595 -3.99817 0.88799 1.54939 2.00216 2.60900 3.10088 3.22138 3.26113 3.54939 3.76402 3.89071 3.98197 4.13975 4.55427 4.70046 4.83535 4.91311 5.02730 5.12650 5.17859 5.21426 5.25373 5.25878 5.34501 5.45150 5.48195 5.59553 5.62474 5.65216 5.70290 5.76024 5.83278 5.94197 5.99725 6.04454 6.11785 6.15610 6.22367 6.34055 6.35135 6.42170 6.51788 7.08836 7.11442 7.47135 7.90687 8.28239 8.74182 9.00430 9.20162 9.74354 10.55614 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.002489 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.987462 B =11246.140272 C =11911.781873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.200 4.200 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.164 4.164 6 C 0.150 3.850 7 H 0.058 0.942 8 C -0.145 4.145 9 N -0.538 5.538 10 C 0.016 3.984 11 C 0.073 3.927 12 C -0.131 4.131 13 C 0.458 3.542 14 O -0.577 6.577 15 N -0.444 5.444 16 C -0.313 4.313 17 H 0.108 0.892 18 C 0.031 3.969 19 N -0.878 5.878 20 Si 0.927 3.073 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.221 3.779 25 C 0.246 3.754 26 N -0.474 5.474 27 S 0.146 5.854 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.273 0.727 44 H 0.127 0.873 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 10.616 9.945 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.318 4.318 3 C -0.172 4.172 4 C -0.173 4.173 5 C -0.282 4.282 6 C 0.040 3.960 7 H 0.076 0.924 8 C -0.203 4.203 9 N -0.263 5.263 10 C -0.132 4.132 11 C -0.055 4.055 12 C -0.172 4.172 13 C 0.246 3.754 14 O -0.460 6.460 15 N -0.164 5.164 16 C -0.440 4.440 17 H 0.126 0.874 18 C -0.172 4.172 19 N -0.516 5.516 20 Si 0.754 3.246 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.194 1.194 24 C 0.094 3.906 25 C -0.072 4.072 26 N -0.154 5.154 27 S 0.411 5.589 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.144 0.856 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.694 9.430 8.672 21.043 hybrid contribution 1.681 1.372 -0.239 2.183 sum -15.013 10.803 8.433 20.328 Atomic orbital electron populations 1.20285 0.88168 1.02748 1.02641 1.24677 1.00078 0.97024 1.10024 1.19934 0.92780 0.99088 1.05443 1.20014 0.96219 0.95745 1.05290 1.24462 0.98481 0.96324 1.08915 1.20055 0.89424 0.91778 0.94761 0.92448 1.21943 1.02562 1.01841 0.93930 1.62108 1.25066 1.29424 1.09707 1.22523 1.00317 1.00871 0.89484 1.21863 0.86648 0.94991 1.01953 1.21562 0.96522 0.97430 1.01649 1.20108 0.89979 0.81221 0.84096 1.90539 1.46837 1.58832 1.49788 1.43641 1.07535 1.16681 1.48556 1.19722 0.87940 1.17617 1.18756 0.87410 1.25277 0.99272 0.98993 0.93707 1.69864 1.41154 1.32206 1.08420 0.85901 0.80943 0.80022 0.77750 1.20131 1.21166 1.19375 1.18739 0.90282 0.99393 0.82217 1.29381 0.90557 0.92084 0.95176 1.80941 1.11688 1.10579 1.12210 1.84486 0.94928 1.07646 1.71831 0.91550 0.90865 0.90837 0.84917 0.84801 0.92092 0.91486 0.91098 0.90732 0.95610 0.91338 0.94016 0.89366 0.89194 0.90408 0.91652 0.85565 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.38 36.01 0.37 -0.17 16 2 C -0.20 -1.91 6.51 -36.00 -0.23 -2.15 16 3 C -0.14 -1.35 10.05 -41.21 -0.41 -1.77 16 4 C -0.14 -1.46 10.04 -41.20 -0.41 -1.88 16 5 C -0.16 -1.84 4.02 -36.00 -0.14 -1.98 16 6 C 0.15 1.78 2.50 -68.87 -0.17 1.60 16 7 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 8 C -0.15 -1.58 8.97 37.15 0.33 -1.25 16 9 N -0.54 -7.15 4.41 -236.28 -1.04 -8.20 16 10 C 0.02 0.22 8.97 60.07 0.54 0.75 16 11 C 0.07 1.14 4.06 -3.82 -0.02 1.12 16 12 C -0.13 -2.22 4.23 -27.88 -0.12 -2.33 16 13 C 0.46 10.12 7.57 -10.99 -0.08 10.04 16 14 O -0.58 -14.70 15.63 5.54 0.09 -14.62 16 15 N -0.44 -10.21 2.60 -117.94 -0.31 -10.52 16 16 C -0.31 -8.00 9.32 -14.93 -0.14 -8.14 16 17 H 0.11 2.92 7.39 -52.49 -0.39 2.53 16 18 C 0.03 0.76 4.87 -17.47 -0.08 0.68 16 19 N -0.88 -22.07 9.48 55.50 0.53 -21.54 16 20 Si 0.93 19.58 29.60 -169.99 -5.03 14.54 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C 0.22 4.33 4.91 -6.83 -0.03 4.30 16 25 C 0.25 5.39 12.96 -20.72 -0.27 5.12 16 26 N -0.47 -11.20 18.54 42.20 0.78 -10.41 16 27 S 0.15 1.57 21.99 -107.50 -2.36 -0.79 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.81 6.20 -51.93 -0.32 0.49 16 36 H 0.07 1.01 6.47 -51.93 -0.34 0.67 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.84 5.97 -51.93 -0.31 0.53 16 39 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.09 1.39 5.79 -51.93 -0.30 1.09 16 41 H 0.09 1.33 7.41 -51.93 -0.38 0.94 16 42 H 0.08 1.33 5.92 -51.93 -0.31 1.02 16 43 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 44 H 0.13 2.54 6.46 -51.93 -0.34 2.20 16 45 H 0.09 1.27 6.68 -51.93 -0.35 0.93 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -30.20 380.70 -8.88 -39.08 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.39 Total: 2.77 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.88 Total: 3.95 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.04 Total: -50.67 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.54 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.36 Total: -0.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.20 -8.88 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058342387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.824 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds