Wall clock time and date at job start Tue Mar 31 2020 04:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33395 * 125.20286 * 2 1 4 4 C 1.38425 * 114.91916 * 179.86400 * 3 2 1 5 5 C 1.33389 * 114.92218 * 0.42380 * 4 3 2 6 6 C 1.50703 * 125.20350 * 179.79247 * 5 4 3 7 7 H 1.09005 * 109.46792 * 20.00386 * 6 5 4 8 8 C 1.53000 * 109.46919 * 260.00595 * 6 5 4 9 9 N 1.46896 * 109.46993 * 140.00514 * 6 5 4 10 10 C 1.46908 * 110.99829 * 303.95351 * 9 6 5 11 11 C 1.46899 * 111.00078 * 180.02562 * 9 6 5 12 12 C 1.52993 * 109.47269 * 189.99602 * 11 9 6 13 13 C 1.50700 * 109.47262 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99656 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00374 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00107 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00212 * 17.72815 * 16 15 13 18 18 C 1.38945 * 120.00040 * 197.72218 * 16 15 13 19 19 N 1.31417 * 119.99991 * 21.40289 * 18 16 15 20 20 Si 1.86795 * 120.00255 * 201.40218 * 18 16 15 21 21 H 1.48502 * 109.47451 * 89.99976 * 20 18 16 22 22 H 1.48502 * 109.47469 * 210.00074 * 20 18 16 23 23 H 1.48496 * 109.47162 * 329.99858 * 20 18 16 24 24 C 1.46506 * 119.99706 * 0.02562 * 15 13 12 25 25 C 1.47198 * 109.46971 * 84.23142 * 24 15 13 26 26 N 9.25491 * 120.12670 * 172.60506 * 2 1 3 27 27 S 1.75886 * 125.20293 * 180.30791 * 2 1 3 28 28 H 1.09001 * 109.46832 * 179.72306 * 1 2 3 29 29 H 1.09001 * 109.46946 * 299.71714 * 1 2 3 30 30 H 1.08993 * 109.47808 * 59.72036 * 1 2 3 31 31 H 1.07995 * 122.53298 * 0.02562 * 3 2 1 32 32 H 1.08000 * 122.53858 * 180.20413 * 4 3 2 33 33 H 1.09005 * 109.47218 * 299.99530 * 8 6 5 34 34 H 1.09001 * 109.47417 * 60.00226 * 8 6 5 35 35 H 1.09006 * 109.46951 * 180.02562 * 8 6 5 36 36 H 1.08994 * 109.46799 * 60.00578 * 10 9 6 37 37 H 1.09004 * 109.46655 * 180.02562 * 10 9 6 38 38 H 1.08997 * 109.47296 * 300.00050 * 10 9 6 39 39 H 1.09004 * 109.47128 * 310.00160 * 11 9 6 40 40 H 1.09007 * 109.47124 * 69.99946 * 11 9 6 41 41 H 1.08994 * 109.47384 * 300.00430 * 12 11 9 42 42 H 1.09001 * 109.46917 * 60.00512 * 12 11 9 43 43 H 0.97002 * 119.99921 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.46858 * 204.23036 * 24 15 13 45 45 H 1.09000 * 109.46802 * 324.23474 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0030 5 6 3.9751 -0.4477 -0.0035 6 6 5.3861 -0.9770 -0.0065 7 1 6.0655 -0.2022 0.3487 8 6 5.7753 -1.3835 -1.4293 9 7 5.4720 -2.1469 0.8778 10 6 5.0150 -1.8161 2.2342 11 6 6.8365 -2.6906 0.9004 12 6 6.8363 -4.0390 1.6233 13 6 8.2360 -4.5970 1.6459 14 8 9.1444 -3.9769 1.1346 15 7 8.4784 -5.7851 2.2343 16 6 9.7518 -6.2925 2.2554 17 1 10.5949 -5.6435 2.0699 18 6 9.9579 -7.6418 2.5155 19 7 8.9834 -8.5034 2.3281 20 14 11.6199 -8.2310 3.1317 21 1 11.6380 -8.1970 4.6162 22 1 11.8563 -9.6210 2.6656 23 1 12.6868 -7.3436 2.6032 24 6 7.3810 -6.5343 2.8514 25 6 6.6882 -7.3266 1.8223 26 7 6.1521 -7.9382 1.0303 27 16 2.5209 -1.4372 -0.0077 28 1 -0.3633 -1.0277 -0.0050 29 1 -0.3633 0.5094 0.8925 30 1 -0.3634 0.5181 -0.8874 31 1 1.8668 2.0894 0.0004 32 1 4.3721 1.6350 0.0066 33 1 5.0958 -2.1583 -1.7846 34 1 5.7115 -0.5154 -2.0855 35 1 6.7957 -1.7668 -1.4314 36 1 3.9783 -1.4818 2.1968 37 1 5.0896 -2.6997 2.8682 38 1 5.6386 -1.0216 2.6441 39 1 7.1906 -2.8261 -0.1216 40 1 7.4951 -1.9977 1.4242 41 1 6.4822 -3.9034 2.6451 42 1 6.1778 -4.7319 1.0994 43 1 9.1272 -9.4453 2.5100 44 1 7.7808 -7.2012 3.6153 45 1 6.6778 -5.8382 3.3086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058342388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:17 Heat of formation + Delta-G solvation = 40.367558 kcal Electronic energy + Delta-G solvation = -26252.206405 eV Core-core repulsion = 22590.256010 eV Total energy + Delta-G solvation = -3661.950394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.25386 -38.58338 -37.28032 -35.76797 -34.34679 -33.07716 -31.89677 -30.94617 -29.99852 -27.46955 -26.90246 -25.66844 -24.70886 -23.45365 -22.44395 -20.50623 -19.17008 -18.80397 -17.89607 -17.05513 -16.48724 -16.31934 -15.57990 -15.52864 -14.99923 -14.44467 -14.36109 -14.26481 -14.01172 -13.92750 -13.44261 -13.28354 -12.97039 -12.72560 -12.68837 -12.50475 -12.27744 -12.05826 -11.95367 -11.86956 -11.72040 -11.61328 -11.42121 -11.35860 -11.21939 -11.07199 -11.03324 -10.69867 -10.59155 -10.43183 -10.39838 -10.20484 -9.26071 -8.60493 -8.53441 -8.44660 -8.30539 -8.04115 -6.50173 -3.99578 0.89340 1.55890 2.01448 2.61176 3.09999 3.22138 3.26149 3.55807 3.77924 3.89645 4.01598 4.14821 4.55976 4.70591 4.84400 4.91382 5.03503 5.13052 5.16567 5.22099 5.25276 5.26379 5.34919 5.44151 5.48187 5.58941 5.63111 5.65354 5.70187 5.72936 5.82057 5.89796 6.01024 6.01817 6.14121 6.16214 6.24151 6.34651 6.35981 6.42723 6.52009 7.08842 7.12127 7.47403 7.90803 8.28423 8.77194 9.00611 9.20349 9.74493 10.55980 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023616 B = 0.002501 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.338263 B =11193.560519 C =11846.077684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.201 4.201 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.164 4.164 6 C 0.151 3.849 7 H 0.058 0.942 8 C -0.146 4.146 9 N -0.540 5.540 10 C 0.017 3.983 11 C 0.073 3.927 12 C -0.131 4.131 13 C 0.457 3.543 14 O -0.577 6.577 15 N -0.444 5.444 16 C -0.314 4.314 17 H 0.108 0.892 18 C 0.031 3.969 19 N -0.877 5.877 20 Si 0.927 3.073 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.222 3.778 25 C 0.246 3.754 26 N -0.472 5.472 27 S 0.147 5.853 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.025 0.975 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.273 0.727 44 H 0.126 0.874 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.258 16.241 0.571 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.318 4.318 3 C -0.173 4.173 4 C -0.172 4.172 5 C -0.282 4.282 6 C 0.041 3.959 7 H 0.076 0.924 8 C -0.204 4.204 9 N -0.265 5.265 10 C -0.132 4.132 11 C -0.054 4.054 12 C -0.171 4.171 13 C 0.246 3.754 14 O -0.460 6.460 15 N -0.164 5.164 16 C -0.441 4.441 17 H 0.126 0.874 18 C -0.172 4.172 19 N -0.516 5.516 20 Si 0.754 3.246 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.194 1.194 24 C 0.095 3.905 25 C -0.072 4.072 26 N -0.152 5.152 27 S 0.412 5.588 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.144 0.856 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.188 13.509 -1.030 20.352 hybrid contribution 1.819 1.758 0.952 2.703 sum -13.368 15.267 -0.078 20.293 Atomic orbital electron populations 1.20284 0.88179 1.02762 1.02629 1.24690 1.00090 0.97058 1.09991 1.19931 0.92777 0.99061 1.05509 1.20006 0.96202 0.95707 1.05332 1.24468 0.98488 0.96324 1.08943 1.20047 0.89418 0.91615 0.94790 0.92400 1.21957 1.02631 1.01857 0.93970 1.62076 1.25149 1.29364 1.09864 1.22527 1.00522 1.00573 0.89555 1.21852 0.86608 0.94837 1.02116 1.21568 0.96562 0.97455 1.01561 1.20104 0.89835 0.83815 0.81665 1.90537 1.46584 1.60545 1.48327 1.43647 1.07303 1.16484 1.48993 1.19716 0.83387 0.93056 1.47901 0.87428 1.25274 0.99471 0.95317 0.97176 1.69870 1.33466 1.03233 1.45005 0.85903 0.81844 0.77857 0.79027 1.20173 1.21138 1.19382 1.18720 0.87652 0.93126 0.91051 1.29243 0.90875 0.92760 0.94355 1.80862 1.13590 1.10641 1.10078 1.84581 0.94935 1.07534 1.71726 0.91551 0.90837 0.90866 0.84925 0.84801 0.91511 0.92051 0.91101 0.91348 0.90705 0.95616 0.89524 0.93865 0.90133 0.89508 0.91646 0.85607 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.38 36.00 0.37 -0.19 16 2 C -0.20 -1.94 6.51 -36.00 -0.23 -2.17 16 3 C -0.14 -1.35 10.05 -41.21 -0.41 -1.77 16 4 C -0.14 -1.45 10.04 -41.21 -0.41 -1.86 16 5 C -0.16 -1.86 4.09 -36.00 -0.15 -2.00 16 6 C 0.15 1.82 2.50 -68.87 -0.17 1.64 16 7 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 8 C -0.15 -1.72 8.97 37.16 0.33 -1.39 16 9 N -0.54 -7.18 4.41 -236.28 -1.04 -8.22 16 10 C 0.02 0.20 8.99 60.07 0.54 0.74 16 11 C 0.07 1.14 4.06 -3.83 -0.02 1.13 16 12 C -0.13 -2.21 4.23 -27.89 -0.12 -2.33 16 13 C 0.46 10.12 7.57 -10.98 -0.08 10.04 16 14 O -0.58 -14.71 15.63 5.55 0.09 -14.62 16 15 N -0.44 -10.22 2.60 -117.93 -0.31 -10.53 16 16 C -0.31 -8.01 9.32 -14.94 -0.14 -8.15 16 17 H 0.11 2.91 7.39 -52.49 -0.39 2.53 16 18 C 0.03 0.77 4.87 -17.47 -0.08 0.68 16 19 N -0.88 -22.07 9.48 55.50 0.53 -21.54 16 20 Si 0.93 19.58 29.60 -169.99 -5.03 14.54 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C 0.22 4.35 4.91 -6.83 -0.03 4.32 16 25 C 0.25 5.42 12.95 -20.79 -0.27 5.15 16 26 N -0.47 -11.25 18.53 42.12 0.78 -10.47 16 27 S 0.15 1.64 21.92 -107.50 -2.36 -0.71 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.89 6.20 -51.93 -0.32 0.56 16 36 H 0.07 0.78 6.05 -51.93 -0.31 0.47 16 37 H 0.07 0.85 6.30 -51.93 -0.33 0.52 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 1.46 5.79 -51.93 -0.30 1.16 16 40 H 0.04 0.70 8.08 -51.92 -0.42 0.28 16 41 H 0.08 1.15 5.75 -51.93 -0.30 0.86 16 42 H 0.09 1.52 7.51 -51.93 -0.39 1.13 16 43 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 44 H 0.13 2.53 6.46 -51.93 -0.34 2.19 16 45 H 0.08 1.24 6.68 -51.93 -0.35 0.89 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -30.39 380.53 -8.87 -39.26 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.38 Total: 2.72 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.88 Total: 3.83 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.04 Total: -50.75 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.54 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.36 Total: -0.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.39 -8.87 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058342388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.623 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds