Wall clock time and date at job start Tue Mar 31 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86798 * 120.00065 * 2 1 4 4 H 1.48495 * 109.47014 * 239.99440 * 3 2 1 5 5 H 1.48495 * 109.46967 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46905 * 119.99668 * 3 2 1 7 7 C 1.38946 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99750 * 197.92271 * 7 2 1 9 9 N 1.37105 * 120.00653 * 17.91955 * 7 2 1 10 10 C 1.34780 * 119.99583 * 44.65184 * 9 7 2 11 11 O 1.21291 * 119.99791 * 359.73177 * 10 9 7 12 12 C 1.50697 * 119.99983 * 179.72589 * 10 9 7 13 13 C 1.50702 * 109.47210 * 180.02562 * 12 10 9 14 14 C 1.38256 * 119.93929 * 89.99940 * 13 12 10 15 15 C 1.38294 * 120.09600 * 180.02562 * 14 13 12 16 16 Cl 1.73597 * 119.97256 * 180.02562 * 15 14 13 17 17 C 1.38804 * 120.04655 * 0.02562 * 15 14 13 18 18 C 1.38920 * 119.81255 * 359.86032 * 17 15 14 19 19 C 1.38180 * 119.93690 * 269.72676 * 13 12 10 20 20 O 1.36112 * 120.78129 * 180.24313 * 18 17 15 21 21 C 1.43179 * 116.69799 * 342.59197 * 20 18 17 22 22 C 1.53473 * 108.22578 * 46.29704 * 21 20 18 23 23 O 1.36135 * 119.39748 * 179.62348 * 17 15 14 24 24 C 1.46498 * 120.00417 * 224.38294 * 9 7 2 25 25 C 1.53001 * 117.49858 * 3.27021 * 24 9 7 26 26 C 1.52999 * 117.49426 * 294.61502 * 24 9 7 27 27 H 0.96996 * 119.99994 * 354.96521 * 1 2 3 28 28 H 1.09004 * 109.47155 * 300.00154 * 12 10 9 29 29 H 1.08997 * 109.47102 * 60.00463 * 12 10 9 30 30 H 1.07993 * 119.95063 * 0.02562 * 14 13 12 31 31 H 1.07997 * 119.95937 * 359.97438 * 19 13 12 32 32 H 1.09000 * 109.70781 * 165.97775 * 21 20 18 33 33 H 1.08996 * 109.70964 * 286.60991 * 21 20 18 34 34 H 1.08997 * 109.70898 * 59.97770 * 22 21 20 35 35 H 1.09008 * 109.70603 * 180.59648 * 22 21 20 36 36 H 1.08993 * 115.55183 * 148.94356 * 24 9 7 37 37 H 1.09003 * 117.49617 * 359.97438 * 25 24 9 38 38 H 1.08995 * 117.50150 * 145.01986 * 25 24 9 39 39 H 1.09002 * 117.49774 * 214.98068 * 26 24 9 40 40 H 1.08996 * 117.50540 * 359.97009 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0496 -1.2259 0.2884 9 7 1.3732 -2.3621 -0.3642 10 6 0.5778 -2.3806 -1.4521 11 8 0.4204 -1.3709 -2.1055 12 6 -0.1160 -3.6557 -1.8567 13 6 -0.9374 -3.4093 -3.0959 14 6 -0.3736 -3.5916 -4.3450 15 6 -1.1242 -3.3659 -5.4844 16 17 -0.4132 -3.5964 -7.0512 17 6 -2.4457 -2.9552 -5.3759 18 6 -3.0120 -2.7747 -4.1203 19 6 -2.2544 -3.0071 -2.9815 20 8 -4.3074 -2.3773 -3.9911 21 6 -4.9203 -1.7959 -5.1471 22 6 -4.5933 -2.6788 -6.3590 23 8 -3.1702 -2.7295 -6.5062 24 6 1.5634 -3.5816 0.4249 25 6 2.4214 -3.4794 1.6876 26 6 2.9643 -4.1963 0.4489 27 1 -0.4850 0.8368 0.0737 28 1 0.6285 -4.4251 -2.0617 29 1 -0.7678 -3.9870 -1.0483 30 1 0.6546 -3.9106 -4.4311 31 1 -2.6936 -2.8702 -2.0044 32 1 -6.0002 -1.7497 -5.0065 33 1 -4.5265 -0.7921 -5.3064 34 1 -4.9820 -3.6841 -6.1970 35 1 -5.0406 -2.2514 -7.2566 36 1 0.7139 -4.2641 0.4476 37 1 2.8448 -2.5049 1.9308 38 1 2.1366 -4.0949 2.5408 39 1 3.0364 -5.2832 0.4877 40 1 3.7443 -3.6936 -0.1229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058406249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:44 Heat of formation + Delta-G solvation = -42.874130 kcal Electronic energy + Delta-G solvation = -27013.042146 eV Core-core repulsion = 23014.167997 eV Total energy + Delta-G solvation = -3998.874150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.091 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17466 -38.86039 -37.72723 -37.24745 -36.24667 -35.81897 -32.90177 -31.98408 -30.91768 -30.51802 -29.21058 -27.04942 -24.97276 -24.07342 -22.51981 -21.71996 -21.22732 -20.63802 -19.26055 -18.45862 -17.35842 -17.09364 -16.41064 -16.02633 -15.43587 -15.19116 -14.77513 -14.74719 -14.43365 -14.27948 -14.17353 -13.98472 -13.72304 -13.29337 -13.11765 -12.77274 -12.14352 -11.99450 -11.79662 -11.63984 -11.31725 -11.12941 -11.04498 -10.90813 -10.81916 -10.74742 -10.54516 -10.48622 -10.42727 -10.17409 -9.95516 -9.73323 -8.69344 -8.24899 -8.07242 -7.79460 -7.00504 -6.09243 -3.84891 1.34485 1.44457 2.27915 3.03390 3.19557 3.31493 3.38979 3.42610 3.78248 4.13360 4.18514 4.29926 4.71507 4.76763 4.78350 4.79325 4.87394 5.10200 5.10997 5.30272 5.36064 5.45539 5.52316 5.59366 5.62641 5.71597 5.77479 6.03333 6.06477 6.08067 6.17272 6.22645 6.23915 6.45510 6.68632 6.75795 6.81597 6.90977 6.94159 7.43166 7.63536 8.29225 9.08197 9.17894 9.68128 10.31083 10.99836 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.003702 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.531229 B = 7561.413081 C = 8141.614213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.349 4.349 8 H 0.076 0.924 9 N -0.429 5.429 10 C 0.486 3.514 11 O -0.523 6.523 12 C -0.099 4.099 13 C -0.022 4.022 14 C -0.094 4.094 15 C -0.028 4.028 16 Cl -0.063 7.063 17 C 0.045 3.955 18 C 0.062 3.938 19 C -0.088 4.088 20 O -0.303 6.303 21 C 0.019 3.981 22 C 0.021 3.979 23 O -0.299 6.299 24 C 0.075 3.925 25 C -0.174 4.174 26 C -0.208 4.208 27 H 0.264 0.736 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 -9.644 -7.808 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.475 4.475 8 H 0.094 0.906 9 N -0.150 5.150 10 C 0.273 3.727 11 O -0.399 6.399 12 C -0.139 4.139 13 C -0.023 4.023 14 C -0.113 4.113 15 C -0.055 4.055 16 Cl -0.034 7.034 17 C -0.001 4.001 18 C 0.017 3.983 19 C -0.107 4.107 20 O -0.217 6.217 21 C -0.056 4.056 22 C -0.054 4.054 23 O -0.213 6.213 24 C -0.032 4.032 25 C -0.211 4.211 26 C -0.247 4.247 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.721 -8.961 -8.398 14.507 hybrid contribution 0.192 0.917 -0.056 0.939 sum -7.530 -8.044 -8.454 13.888 Atomic orbital electron populations 1.69804 1.06491 1.27456 1.42844 1.25214 0.94801 0.99268 0.94249 0.86299 0.79323 0.82083 0.78455 1.19963 1.21252 1.20399 1.18773 0.94278 0.83776 1.50717 0.90649 1.42737 1.44306 1.06861 1.21117 1.19574 0.83126 0.88411 0.81606 1.90568 1.61984 1.34534 1.52848 1.20734 0.98847 0.99574 0.94757 1.19100 0.92464 0.96764 0.94020 1.20680 0.99772 1.01322 0.89563 1.19935 0.91330 1.06876 0.87370 1.98336 1.83275 1.95549 1.26249 1.18336 0.91724 1.04721 0.85295 1.18579 0.85246 1.02195 0.92300 1.20370 0.92792 1.00440 0.97104 1.86332 1.22584 1.76315 1.36518 1.23624 0.99887 0.96946 0.85173 1.23606 0.80291 1.01097 1.00442 1.86358 1.18136 1.87936 1.28897 1.21709 0.92496 0.91659 0.97313 1.23064 1.04539 1.02455 0.91089 1.23328 0.99854 0.98446 1.03104 0.92602 0.89201 0.89287 0.84303 0.84297 0.86194 0.90394 0.90622 0.86235 0.87981 0.87520 0.89843 0.89806 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.44 11.75 55.50 0.65 -23.79 16 2 C 0.08 2.10 4.40 -17.47 -0.08 2.03 16 3 Si 0.91 22.00 29.59 -169.99 -5.03 16.97 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.35 -9.36 7.91 -14.93 -0.12 -9.48 16 8 H 0.08 1.97 7.26 -52.48 -0.38 1.59 16 9 N -0.43 -10.38 2.83 -107.73 -0.31 -10.69 16 10 C 0.49 11.85 6.96 -10.99 -0.08 11.77 16 11 O -0.52 -15.07 13.80 5.55 0.08 -14.99 16 12 C -0.10 -1.80 4.45 -29.04 -0.13 -1.93 16 13 C -0.02 -0.41 4.37 -104.64 -0.46 -0.87 16 14 C -0.09 -1.63 9.47 -39.55 -0.37 -2.00 16 15 C -0.03 -0.47 6.33 -39.35 -0.25 -0.72 16 16 Cl -0.06 -0.95 28.46 -51.86 -1.48 -2.43 16 17 C 0.04 0.75 6.49 -39.12 -0.25 0.50 16 18 C 0.06 1.06 6.49 -39.14 -0.25 0.81 16 19 C -0.09 -1.60 9.61 -39.42 -0.38 -1.98 16 20 O -0.30 -4.65 10.42 -32.90 -0.34 -4.99 16 21 C 0.02 0.21 7.26 37.40 0.27 0.48 16 22 C 0.02 0.22 7.26 37.40 0.27 0.49 16 23 O -0.30 -4.39 9.84 -32.97 -0.32 -4.72 16 24 C 0.07 1.42 5.87 -67.93 -0.40 1.02 16 25 C -0.17 -3.03 9.80 -26.70 -0.26 -3.29 16 26 C -0.21 -3.40 10.36 -26.70 -0.28 -3.68 16 27 H 0.26 7.50 8.32 -40.82 -0.34 7.17 16 28 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 29 H 0.09 1.46 7.51 -51.93 -0.39 1.07 16 30 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 32 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.12 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.10 1.70 6.97 -51.93 -0.36 1.34 16 37 H 0.11 2.09 6.73 -51.93 -0.35 1.74 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -34.09 352.99 -9.03 -43.12 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.84 Total: 3.05 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.76 Total: -6.85 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.35 Total: -34.48 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.59 Total: -24.70 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.48 Total: -2.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.09 -9.03 -43.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058406249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.249 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds