Wall clock time and date at job start Tue Mar 31 2020 05:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.36175 * 119.99889 * 121.55572 * 3 2 1 5 5 C 1.46673 * 119.99925 * 172.67936 * 4 3 2 6 6 C 1.39985 * 120.23217 * 324.86780 * 5 4 3 7 7 C 1.37779 * 119.88515 * 179.72469 * 6 5 4 8 8 C 1.38614 * 120.35697 * 0.02562 * 7 6 5 9 9 C 1.38107 * 120.47468 * 359.97438 * 8 7 6 10 10 C 1.38740 * 120.10481 * 359.97438 * 9 8 7 11 11 O 1.35520 * 120.17991 * 180.02562 * 10 9 8 12 12 C 1.22323 * 117.00051 * 6.11764 * 11 10 9 13 13 H 1.08002 * 120.00071 * 5.24356 * 12 11 10 14 14 C 1.46558 * 119.99964 * 185.23681 * 12 11 10 15 15 N 1.29411 * 119.99854 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00258 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47596 * 89.99551 * 16 14 12 18 18 H 1.48507 * 109.47286 * 210.00151 * 16 14 12 19 19 H 1.48503 * 109.46773 * 329.99810 * 16 14 12 20 20 C 1.48075 * 119.99983 * 301.55311 * 3 2 1 21 21 C 1.39516 * 120.13801 * 117.53664 * 20 3 2 22 22 C 1.37963 * 119.86070 * 179.76502 * 21 20 3 23 23 C 1.38360 * 120.13465 * 0.51409 * 22 21 20 24 24 N 1.48030 * 119.85645 * 179.72086 * 23 22 21 25 25 O 1.31696 * 119.99540 * 180.02562 * 24 23 22 26 26 O 1.31701 * 120.00301 * 0.02562 * 24 23 22 27 27 C 1.38352 * 120.28228 * 359.73601 * 23 22 21 28 28 C 1.37971 * 120.13754 * 0.02562 * 27 23 22 29 29 H 1.07995 * 119.99831 * 352.68022 * 4 3 2 30 30 H 1.08002 * 120.05969 * 359.74536 * 6 5 4 31 31 H 1.08002 * 119.81725 * 179.97438 * 7 6 5 32 32 H 1.07999 * 119.76637 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.95325 * 180.02562 * 9 8 7 34 34 H 0.97007 * 119.99602 * 179.97438 * 15 14 12 35 35 H 1.08006 * 120.06608 * 359.97438 * 21 20 3 36 36 H 1.07995 * 119.93101 * 180.22553 * 22 21 20 37 37 H 1.08003 * 119.93295 * 180.02562 * 27 23 22 38 38 H 1.08000 * 120.07084 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2486 0.6181 -1.0049 5 6 4.7063 0.7594 -0.9247 6 6 5.3264 0.9758 0.3115 7 6 6.6968 1.1019 0.3794 8 6 7.4660 1.0160 -0.7705 9 6 6.8696 0.8028 -1.9978 10 6 5.4914 0.6720 -2.0885 11 8 4.9047 0.4623 -3.2919 12 6 5.6466 0.2822 -4.2476 13 1 6.7137 0.2105 -4.0969 14 6 5.0876 0.1636 -5.5972 15 7 5.8726 -0.0264 -6.6083 16 14 3.2421 0.2880 -5.8580 17 1 2.8704 1.7057 -6.0974 18 1 2.8519 -0.5314 -7.0335 19 1 2.5368 -0.2114 -4.6504 20 6 3.3087 -0.6701 1.0928 21 6 4.1425 -1.7529 0.8122 22 6 4.8337 -2.3705 1.8341 23 6 4.6930 -1.9248 3.1364 24 7 5.4328 -2.5960 4.2289 25 8 5.3005 -2.1744 5.4695 26 8 6.2231 -3.6147 3.9603 27 6 3.8637 -0.8549 3.4218 28 6 3.1709 -0.2257 2.4081 29 1 2.7150 1.0038 -1.8610 30 1 4.7318 1.0436 1.2106 31 1 7.1740 1.2692 1.3337 32 1 8.5394 1.1166 -0.7063 33 1 7.4771 0.7370 -2.8883 34 1 5.5025 -0.1053 -7.5015 35 1 4.2493 -2.1048 -0.2033 36 1 5.4822 -3.2065 1.6177 37 1 3.7584 -0.5114 4.4404 38 1 2.5235 0.6092 2.6322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059465330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:02 Heat of formation + Delta-G solvation = 128.431466 kcal Electronic energy + Delta-G solvation = -27317.383234 eV Core-core repulsion = 23290.255869 eV Total energy + Delta-G solvation = -4027.127365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.094 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -40.92283 -40.34338 -38.65458 -37.42970 -36.60196 -34.42938 -34.39869 -33.32958 -31.59261 -31.32234 -29.75095 -29.30201 -26.51612 -25.68942 -24.00317 -23.12981 -22.14495 -21.58523 -20.64530 -18.82039 -18.80177 -18.07364 -17.96990 -17.56553 -15.97921 -15.85473 -15.40608 -15.32505 -15.05862 -14.92769 -14.47104 -14.37309 -14.12136 -13.96045 -13.58067 -13.34142 -13.30799 -13.03492 -12.85579 -12.64621 -12.37153 -11.91772 -11.69498 -11.66926 -11.33926 -11.30492 -11.14725 -11.10383 -10.92482 -10.69740 -10.66465 -9.87385 -9.83560 -9.54667 -9.50863 -9.26131 -8.09924 -7.63624 -7.26248 -4.13905 -0.74962 0.68344 0.88921 1.11302 1.13896 2.04786 2.25477 2.80040 2.80366 2.84540 2.92230 3.13800 3.50929 3.61177 4.03726 4.11188 4.26842 4.28160 4.36139 4.54179 4.61242 4.79108 4.86652 5.06226 5.29585 5.41375 5.47891 5.54342 5.59569 5.62248 5.82109 5.84371 5.93289 6.05769 6.19690 6.27576 6.32489 6.39087 6.55778 6.75927 6.89775 6.91147 7.02303 7.15593 7.31779 7.57760 7.68615 7.95117 9.28606 9.74925 Molecular weight = 336.09amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.003683 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.342669 B = 7600.712444 C = 8732.082846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.272 3.728 3 C -0.151 4.151 4 C 0.078 3.922 5 C -0.199 4.199 6 C -0.031 4.031 7 C -0.236 4.236 8 C -0.046 4.046 9 C -0.224 4.224 10 C 0.119 3.881 11 O -0.112 6.112 12 C -0.388 4.388 13 H 0.106 0.894 14 C 0.067 3.933 15 N -0.798 5.798 16 Si 0.907 3.093 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.248 1.248 20 C 0.070 3.930 21 C -0.096 4.096 22 C -0.041 4.041 23 C -0.018 4.018 24 N -0.011 5.011 25 O -0.185 6.185 26 O -0.180 6.180 27 C -0.047 4.047 28 C -0.126 4.126 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.300 0.700 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 0.687 8.825 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.041 4.041 3 C -0.156 4.156 4 C 0.055 3.945 5 C -0.201 4.201 6 C -0.049 4.049 7 C -0.255 4.255 8 C -0.065 4.065 9 C -0.243 4.243 10 C 0.061 3.939 11 O -0.006 6.006 12 C -0.465 4.465 13 H 0.123 0.877 14 C -0.151 4.151 15 N -0.424 5.424 16 Si 0.729 3.271 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.171 1.171 20 C 0.068 3.932 21 C -0.114 4.114 22 C -0.061 4.061 23 C -0.105 4.105 24 N 0.466 4.534 25 O -0.377 6.377 26 O -0.372 6.372 27 C -0.066 4.066 28 C -0.145 4.145 29 H 0.148 0.852 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.113 0.887 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.171 0.829 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.887 0.887 7.923 8.869 hybrid contribution 0.431 -0.116 -0.130 0.464 sum -3.456 0.771 7.793 8.560 Atomic orbital electron populations 1.81218 1.12026 1.10814 1.08467 1.25503 0.92221 0.92909 0.93464 1.16028 0.83778 1.14148 1.01614 1.22287 0.93134 0.86233 0.92847 1.17440 0.90447 1.20733 0.91504 1.21026 0.94507 0.94650 0.94712 1.20414 0.93607 1.13739 0.97725 1.20859 0.98630 0.94899 0.92090 1.20879 0.94166 1.10833 0.98470 1.18985 0.91117 0.99863 0.83949 1.79864 1.39009 1.67409 1.14280 1.20554 0.94051 1.47028 0.84875 0.87677 1.26410 1.00976 0.94869 0.92825 1.68563 1.38965 1.34129 1.00774 0.86148 0.81050 0.79969 0.79930 1.18661 1.19561 1.17129 1.18850 0.91183 0.91189 0.92000 1.21406 0.95590 0.94450 0.99979 1.21032 0.96734 0.99145 0.89160 1.20377 1.03406 1.00650 0.86040 1.50497 0.99026 1.00291 1.03615 1.96253 1.71504 1.68963 1.00976 1.96271 1.34060 1.16179 1.90726 1.20963 0.92213 0.91649 1.01763 1.21388 1.00885 1.01133 0.91067 0.85197 0.86643 0.87679 0.87344 0.85216 0.88718 0.82839 0.82749 0.82947 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.25 18.54 41.84 0.78 -6.47 16 2 C 0.27 3.88 15.29 -22.47 -0.34 3.53 16 3 C -0.15 -1.94 5.24 -104.68 -0.55 -2.48 16 4 C 0.08 1.10 9.05 -36.92 -0.33 0.77 16 5 C -0.20 -3.13 5.04 -104.93 -0.53 -3.66 16 6 C -0.03 -0.44 7.69 -39.10 -0.30 -0.74 16 7 C -0.24 -3.46 10.02 -39.61 -0.40 -3.85 16 8 C -0.05 -0.72 10.03 -39.49 -0.40 -1.11 16 9 C -0.22 -4.01 9.07 -39.44 -0.36 -4.37 16 10 C 0.12 2.20 6.61 -38.48 -0.25 1.95 16 11 O -0.11 -2.31 7.68 21.60 0.17 -2.14 16 12 C -0.39 -8.69 9.94 34.08 0.34 -8.35 16 13 H 0.11 2.44 5.23 -52.49 -0.27 2.17 16 14 C 0.07 1.49 5.69 -15.22 -0.09 1.40 16 15 N -0.80 -18.30 13.88 55.98 0.78 -17.52 16 16 Si 0.91 17.02 28.83 -169.99 -4.90 12.11 16 17 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 18 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 19 H -0.25 -4.64 7.11 56.52 0.40 -4.24 16 20 C 0.07 0.80 2.94 -104.91 -0.31 0.49 16 21 C -0.10 -1.10 8.28 -39.21 -0.32 -1.42 16 22 C -0.04 -0.48 9.56 -39.64 -0.38 -0.85 16 23 C -0.02 -0.22 6.89 -79.85 -0.55 -0.77 16 24 N -0.01 -0.16 4.99 34.01 0.17 0.01 16 25 O -0.19 -2.83 19.14 -31.57 -0.60 -3.44 16 26 O -0.18 -2.82 19.14 -31.57 -0.60 -3.42 16 27 C -0.05 -0.48 9.56 -39.64 -0.38 -0.86 16 28 C -0.13 -1.26 8.38 -39.20 -0.33 -1.59 16 29 H 0.13 1.85 8.04 -52.49 -0.42 1.42 16 30 H 0.12 1.43 5.17 -52.49 -0.27 1.16 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.13 2.42 5.78 -52.49 -0.30 2.12 16 34 H 0.30 6.18 8.26 -40.82 -0.34 5.85 16 35 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 36 H 0.15 1.62 7.57 -52.49 -0.40 1.23 16 37 H 0.15 1.35 7.57 -52.48 -0.40 0.95 16 38 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -24.48 352.64 -7.27 -31.75 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -2.89 Total: 5.74 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -5.48 Total: -21.93 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 1.72 Total: -23.98 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -1.04 Total: -9.01 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -4.90 Total: 12.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -24.48 -7.27 -31.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059465330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.184 kcal (2) G-P(sol) polarization free energy of solvation -24.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds