Wall clock time and date at job start Tue Mar 31 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31360 * 1 3 3 Si 1.86800 * 120.00322 * 2 1 4 4 H 1.48497 * 109.47254 * 270.00530 * 3 2 1 5 5 H 1.48503 * 109.46656 * 30.00399 * 3 2 1 6 6 H 1.48496 * 109.46974 * 150.00046 * 3 2 1 7 7 C 1.39060 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00330 * 359.97438 * 7 2 1 9 9 N 1.36796 * 119.99913 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00411 * 179.97438 * 9 7 2 11 11 O 1.21777 * 119.99431 * 0.02562 * 10 9 7 12 12 C 1.46117 * 120.00618 * 179.97438 * 10 9 7 13 13 N 1.29543 * 125.28262 * 0.02598 * 12 10 9 14 14 N 1.39339 * 113.96683 * 179.97438 * 13 12 10 15 15 C 1.39559 * 125.53122 * 180.02562 * 14 13 12 16 16 C 1.38987 * 120.08531 * 0.02562 * 15 14 13 17 17 C 1.38072 * 119.92198 * 180.02562 * 16 15 14 18 18 C 1.38305 * 120.08205 * 359.97438 * 17 16 15 19 19 C 1.38304 * 120.15990 * 0.02562 * 18 17 16 20 20 C 1.38083 * 120.08331 * 0.02562 * 19 18 17 21 21 C 1.47117 * 108.92977 * 0.26227 * 14 13 12 22 22 H 1.09004 * 110.58459 * 241.18652 * 21 14 13 23 23 C 1.50701 * 110.58152 * 118.29109 * 21 14 13 24 24 C 1.38244 * 119.99635 * 321.17661 * 23 21 14 25 25 C 1.38235 * 119.99825 * 179.77072 * 24 23 21 26 26 C 1.38238 * 119.99982 * 0.48281 * 25 24 23 27 27 C 1.38231 * 120.00043 * 359.79096 * 26 25 24 28 28 C 1.38231 * 120.00296 * 141.45429 * 23 21 14 29 29 C 1.51195 * 125.29164 * 179.97438 * 12 10 9 30 30 H 0.96997 * 120.00293 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00400 * 359.97438 * 9 7 2 32 32 H 1.08001 * 120.03740 * 0.02562 * 16 15 14 33 33 H 1.08004 * 119.96263 * 180.02562 * 17 16 15 34 34 H 1.08002 * 119.92022 * 179.74916 * 18 17 16 35 35 H 1.08007 * 119.95729 * 180.02562 * 19 18 17 36 36 H 1.08003 * 120.04038 * 179.97438 * 20 19 18 37 37 H 1.07997 * 119.99959 * 0.02562 * 24 23 21 38 38 H 1.07994 * 119.99983 * 180.25787 * 25 24 23 39 39 H 1.07994 * 119.99853 * 179.77040 * 26 25 24 40 40 H 1.07997 * 120.00259 * 179.97438 * 27 26 25 41 41 H 1.07993 * 120.00349 * 0.02562 * 28 23 21 42 42 H 1.08996 * 110.52113 * 298.66294 * 29 12 10 43 43 H 1.08995 * 110.52438 * 61.26818 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4951 2.0464 -1.4000 5 1 1.4451 2.6526 0.7002 6 1 3.5452 1.4400 0.7000 7 6 2.0088 -1.2043 -0.0005 8 1 1.4689 -2.1396 -0.0005 9 7 3.3768 -1.2044 -0.0011 10 6 4.0507 -2.3715 -0.0011 11 8 3.4418 -3.4261 -0.0011 12 6 5.5119 -2.3716 -0.0022 13 7 6.2602 -1.3142 -0.0028 14 7 7.6265 -1.5877 -0.0033 15 6 8.6447 -0.6333 -0.0034 16 6 8.3305 0.7206 -0.0025 17 6 9.3406 1.6620 -0.0032 18 6 10.6637 1.2592 -0.0042 19 6 10.9801 -0.0871 -0.0051 20 6 9.9754 -1.0343 -0.0055 21 6 7.8213 -3.0459 -0.0093 22 1 8.3591 -3.3644 0.8837 23 6 8.5549 -3.4772 -1.2531 24 6 8.2749 -2.8737 -2.4649 25 6 8.9511 -3.2660 -3.6050 26 6 9.9002 -4.2687 -3.5351 27 6 10.1761 -4.8760 -2.3245 28 6 9.5035 -4.4802 -1.1834 29 6 6.3853 -3.6058 -0.0018 30 1 -0.4850 0.8400 0.0004 31 1 3.8619 -0.3644 -0.0014 32 1 7.2976 1.0359 -0.0013 33 1 9.0972 2.7143 -0.0021 34 1 11.4516 1.9978 -0.0089 35 1 12.0145 -0.3980 -0.0055 36 1 10.2233 -2.0855 -0.0066 37 1 7.5308 -2.0929 -2.5202 38 1 8.7354 -2.7916 -4.5509 39 1 10.4258 -4.5777 -4.4265 40 1 10.9172 -5.6597 -2.2699 41 1 9.7188 -4.9551 -0.2376 42 1 6.2071 -4.1997 0.8946 43 1 6.2049 -4.2020 -0.8962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:56 Heat of formation + Delta-G solvation = 82.328424 kcal Electronic energy + Delta-G solvation = -27985.366481 eV Core-core repulsion = 24189.791695 eV Total energy + Delta-G solvation = -3795.574786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.81020 -38.91924 -38.77398 -37.67553 -34.21270 -33.25036 -32.65217 -31.84787 -31.03951 -30.78997 -28.92859 -28.76841 -25.63576 -24.09840 -23.03404 -22.74633 -22.32500 -21.29272 -20.48425 -19.20681 -18.23571 -17.70181 -17.14290 -16.33969 -16.00152 -15.86966 -15.09262 -14.87849 -14.74964 -14.66579 -14.26690 -13.71677 -13.64689 -13.53478 -13.50376 -13.27108 -13.23823 -12.95807 -12.87616 -12.47692 -12.35727 -11.98605 -11.75475 -11.52481 -11.34928 -11.23673 -11.15815 -11.05555 -10.67863 -10.27025 -10.11475 -9.78286 -9.48581 -9.06872 -9.00183 -8.92305 -8.80164 -8.39153 -7.31044 -6.57025 -3.99097 1.11468 1.23636 1.26239 1.43440 1.97635 2.55014 3.00621 3.04404 3.08506 3.60621 3.87079 3.94780 3.99351 4.17950 4.22995 4.51467 4.72648 4.73459 4.83635 4.95907 4.97830 5.01596 5.07063 5.13363 5.19886 5.31577 5.38647 5.44743 5.46638 5.65671 5.67120 5.70991 5.81341 5.89260 5.91299 6.05122 6.21691 6.27949 6.36144 6.41943 6.45818 6.58642 6.62389 6.82066 6.84155 7.31594 7.40884 7.88541 7.96133 8.38615 8.70977 9.18941 9.62435 10.53218 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.003981 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.017659 B = 7030.850039 C = 8740.726988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.049 3.951 3 Si 0.875 3.125 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.298 4.298 8 H 0.128 0.872 9 N -0.543 5.543 10 C 0.494 3.506 11 O -0.574 6.574 12 C 0.073 3.927 13 N -0.232 5.232 14 N -0.466 5.466 15 C 0.239 3.761 16 C -0.165 4.165 17 C -0.082 4.082 18 C -0.172 4.172 19 C -0.081 4.081 20 C -0.179 4.179 21 C 0.153 3.847 22 H 0.095 0.905 23 C -0.093 4.093 24 C -0.091 4.091 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.109 4.109 29 C -0.102 4.102 30 H 0.280 0.720 31 H 0.381 0.619 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.107 0.893 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.609 -2.111 -2.763 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.158 4.158 3 Si 0.700 3.300 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.428 4.428 8 H 0.145 0.855 9 N -0.180 5.180 10 C 0.280 3.720 11 O -0.458 6.458 12 C -0.119 4.119 13 N -0.041 5.041 14 N -0.264 5.264 15 C 0.141 3.859 16 C -0.186 4.186 17 C -0.101 4.101 18 C -0.192 4.192 19 C -0.100 4.100 20 C -0.202 4.202 21 C 0.048 3.952 22 H 0.112 0.888 23 C -0.094 4.094 24 C -0.109 4.109 25 C -0.135 4.135 26 C -0.136 4.136 27 C -0.139 4.139 28 C -0.128 4.128 29 C -0.142 4.142 30 H 0.091 0.909 31 H 0.215 0.785 32 H 0.148 0.852 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.125 0.875 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 23.031 -1.705 -2.744 23.257 hybrid contribution 0.679 0.499 -0.042 0.844 sum 23.710 -1.206 -2.786 23.904 Atomic orbital electron populations 1.69593 1.05870 1.28436 1.45297 1.25153 0.95587 0.98490 0.96568 0.86686 0.80346 0.83294 0.79644 1.19006 1.19602 1.18592 1.19600 0.79032 0.97130 1.47089 0.85459 1.42189 1.07730 1.06649 1.61416 1.15940 0.82556 0.85044 0.88468 1.90739 1.67169 1.30499 1.57351 1.25131 0.95768 0.91262 0.99773 1.74971 0.89316 1.26526 1.13307 1.48253 1.00130 1.02726 1.75322 1.17265 0.85499 0.87533 0.95589 1.20809 1.00539 0.90713 1.06575 1.20936 0.92427 0.99008 0.97716 1.20939 0.96263 0.95759 1.06213 1.20799 0.98290 0.92735 0.98144 1.20627 0.90373 1.00004 1.09166 1.21125 0.96680 0.81361 0.96036 0.88761 1.19962 0.97434 0.97418 0.94613 1.20985 0.98947 0.99043 0.91960 1.21148 0.96544 0.97498 0.98329 1.21162 0.98031 0.96582 0.97817 1.21079 1.00010 1.00118 0.92669 1.20955 0.95984 0.96957 0.98876 1.21973 0.88853 0.97477 1.05892 0.90924 0.78490 0.85186 0.86051 0.86520 0.86213 0.86129 0.86321 0.86048 0.86142 0.85979 0.85884 0.87512 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.71 13.95 55.50 0.77 -22.94 16 2 C 0.05 1.30 5.50 -17.45 -0.10 1.21 16 3 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.43 6.52 56.52 0.37 -5.06 16 7 C -0.30 -8.20 10.16 -15.03 -0.15 -8.35 16 8 H 0.13 3.92 7.38 -52.49 -0.39 3.53 16 9 N -0.54 -13.24 5.08 -12.33 -0.06 -13.30 16 10 C 0.49 11.59 7.72 -13.10 -0.10 11.49 16 11 O -0.57 -15.26 16.49 5.12 0.08 -15.17 16 12 C 0.07 1.40 7.26 -80.16 -0.58 0.81 16 13 N -0.23 -4.21 10.89 34.90 0.38 -3.83 16 14 N -0.47 -7.20 3.12 -52.31 -0.16 -7.36 16 15 C 0.24 3.50 6.50 -83.79 -0.54 2.95 16 16 C -0.16 -2.39 9.64 -39.36 -0.38 -2.77 16 17 C -0.08 -0.99 10.04 -39.62 -0.40 -1.39 16 18 C -0.17 -1.87 10.04 -39.53 -0.40 -2.27 16 19 C -0.08 -0.89 10.04 -39.61 -0.40 -1.28 16 20 C -0.18 -2.24 9.05 -39.36 -0.36 -2.59 16 21 C 0.15 2.02 2.98 -68.15 -0.20 1.82 16 22 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 23 C -0.09 -1.12 3.11 -104.62 -0.33 -1.45 16 24 C -0.09 -1.19 9.25 -39.58 -0.37 -1.56 16 25 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 28 C -0.11 -1.09 9.42 -39.58 -0.37 -1.46 16 29 C -0.10 -1.54 6.36 -27.05 -0.17 -1.71 16 30 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.38 8.59 5.37 -40.82 -0.22 8.37 16 32 H 0.13 2.03 7.66 -52.49 -0.40 1.62 16 33 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 36 H 0.12 1.40 6.18 -52.48 -0.32 1.07 16 37 H 0.12 1.79 7.72 -52.49 -0.41 1.39 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.97 8.05 -52.49 -0.42 0.55 16 42 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.10 1.57 7.72 -51.93 -0.40 1.17 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -30.64 368.14 -9.30 -39.93 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.11 Total: 14.04 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -6.04 Total: -11.30 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.93 Total: -47.43 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.64 -9.30 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.263 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds