Wall clock time and date at job start Tue Mar 31 2020 04:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86800 * 120.00035 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99883 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99892 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00139 * 3 2 1 7 7 C 1.39059 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00110 * 179.97438 * 7 2 1 9 9 N 1.36795 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99799 * 179.97438 * 9 7 2 11 11 O 1.21771 * 120.00183 * 0.02562 * 10 9 7 12 12 C 1.46126 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.29539 * 125.28823 * 359.69912 * 12 10 9 14 14 N 1.39335 * 113.97130 * 179.80834 * 13 12 10 15 15 C 1.39565 * 125.53207 * 180.17734 * 14 13 12 16 16 C 1.38984 * 120.07670 * 180.02562 * 15 14 13 17 17 C 1.38083 * 119.91743 * 179.74404 * 16 15 14 18 18 C 1.38310 * 120.07589 * 0.52845 * 17 16 15 19 19 C 1.38301 * 120.16577 * 359.74464 * 18 17 16 20 20 C 1.38088 * 120.08004 * 359.97438 * 19 18 17 21 21 C 1.47121 * 108.92779 * 0.45473 * 14 13 12 22 22 H 1.09006 * 110.58109 * 118.30190 * 21 14 13 23 23 C 1.50699 * 110.71359 * 241.14229 * 21 14 13 24 24 C 1.38228 * 119.99761 * 34.06615 * 23 21 14 25 25 C 1.38242 * 120.00172 * 179.76855 * 24 23 21 26 26 C 1.38241 * 119.99218 * 0.48543 * 25 24 23 27 27 C 1.38236 * 120.00475 * 359.79308 * 26 25 24 28 28 C 1.38229 * 119.99555 * 359.95485 * 27 26 25 29 29 C 1.51204 * 125.28887 * 180.02562 * 12 10 9 30 30 H 0.97005 * 119.99929 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00644 * 359.72584 * 9 7 2 32 32 H 1.08002 * 120.04431 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.96146 * 180.26993 * 17 16 15 34 34 H 1.07999 * 119.91641 * 179.76317 * 18 17 16 35 35 H 1.07993 * 119.95854 * 179.97438 * 19 18 17 36 36 H 1.07998 * 120.03512 * 180.02562 * 20 19 18 37 37 H 1.08004 * 120.00072 * 0.02562 * 24 23 21 38 38 H 1.08000 * 120.00199 * 180.25350 * 25 24 23 39 39 H 1.08002 * 119.99217 * 179.76901 * 26 25 24 40 40 H 1.07994 * 119.99758 * 179.97438 * 27 26 25 41 41 H 1.08003 * 119.99670 * 180.02562 * 28 27 26 42 42 H 1.09001 * 110.51884 * 298.62754 * 29 12 10 43 43 H 1.08998 * 110.52309 * 61.37721 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0463 -1.4001 5 1 1.4452 2.6527 0.7000 6 1 3.5452 1.4401 0.7000 7 6 2.0089 -1.2043 0.0005 8 1 3.0889 -1.2043 0.0001 9 7 1.3249 -2.3889 0.0016 10 6 1.9988 -3.5561 0.0016 11 8 3.2165 -3.5562 0.0011 12 6 1.2681 -4.8216 0.0033 13 7 -0.0217 -4.9410 0.0104 14 7 -0.4681 -6.2609 0.0061 15 6 -1.8039 -6.6654 0.0085 16 6 -2.1219 -8.0184 0.0042 17 6 -3.4446 -8.4149 0.0120 18 6 -4.4523 -7.4675 0.0129 19 6 -4.1395 -6.1203 0.0115 20 6 -2.8191 -5.7163 0.0096 21 6 0.6973 -7.1588 0.0054 22 1 0.7042 -7.7784 0.9022 23 6 0.7062 -8.0197 -1.2315 24 6 0.2315 -7.5154 -2.4278 25 6 0.2440 -8.3034 -3.5636 26 6 0.7220 -9.5991 -3.5005 27 6 1.1913 -10.1052 -2.3028 28 6 1.1836 -9.3154 -1.1684 29 6 1.9002 -6.1952 0.0040 30 1 -0.4850 0.8401 -0.0004 31 1 0.3549 -2.3890 0.0060 32 1 -1.3356 -8.7587 -0.0014 33 1 -3.6925 -9.4660 0.0130 34 1 -5.4859 -7.7805 0.0151 35 1 -4.9290 -5.3834 0.0118 36 1 -2.5757 -4.6641 0.0089 37 1 -0.1453 -6.5044 -2.4761 38 1 -0.1230 -7.9081 -4.4992 39 1 0.7283 -10.2159 -4.3870 40 1 1.5643 -11.1175 -2.2536 41 1 1.5507 -9.7107 -0.2327 42 1 2.5035 -6.3386 -0.8924 43 1 2.5049 -6.3371 0.8997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:00 Heat of formation + Delta-G solvation = 75.902047 kcal Electronic energy + Delta-G solvation = -27862.479061 eV Core-core repulsion = 24066.625607 eV Total energy + Delta-G solvation = -3795.853455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69893 -38.82681 -38.61849 -37.51275 -34.16273 -33.13272 -32.55563 -31.38708 -30.97102 -30.67402 -28.82212 -28.62407 -25.55397 -24.00294 -23.07875 -22.68190 -22.25264 -21.28447 -20.38296 -18.72914 -18.03975 -17.58330 -17.06431 -16.31499 -15.88131 -15.79107 -14.87943 -14.76256 -14.63548 -14.57344 -14.16140 -13.97853 -13.58414 -13.44913 -13.43492 -13.15909 -13.09444 -12.87601 -12.77732 -12.30947 -11.99922 -11.70052 -11.62386 -11.41808 -11.24797 -11.15819 -11.07572 -10.94260 -10.51677 -10.41403 -10.02415 -9.71895 -9.36823 -9.00813 -8.90307 -8.80131 -8.68780 -8.18809 -7.18979 -6.65744 -3.97875 1.18592 1.31508 1.38123 1.54543 2.11944 2.67292 3.12410 3.17537 3.23289 3.66873 3.98002 3.99440 4.13261 4.34055 4.44686 4.61870 4.80629 4.86148 4.89554 5.04333 5.06226 5.10888 5.17094 5.20813 5.30388 5.38948 5.49646 5.56149 5.66864 5.75729 5.78976 5.85758 5.88588 5.96301 6.00105 6.19051 6.33188 6.39342 6.43185 6.51257 6.56027 6.70974 6.76837 6.88484 6.96212 7.32960 7.51900 7.83345 8.08389 8.41907 8.94371 9.31881 9.86193 10.49397 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.003500 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.818800 B = 7997.595444 C = 9600.475627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.028 3.972 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.295 4.295 8 H 0.112 0.888 9 N -0.515 5.515 10 C 0.482 3.518 11 O -0.594 6.594 12 C 0.074 3.926 13 N -0.225 5.225 14 N -0.467 5.467 15 C 0.240 3.760 16 C -0.181 4.181 17 C -0.082 4.082 18 C -0.173 4.173 19 C -0.082 4.082 20 C -0.162 4.162 21 C 0.152 3.848 22 H 0.093 0.907 23 C -0.092 4.092 24 C -0.091 4.091 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.110 4.110 29 C -0.101 4.101 30 H 0.279 0.721 31 H 0.402 0.598 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.569 -18.263 -2.655 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.178 4.178 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.426 4.426 8 H 0.130 0.870 9 N -0.149 5.149 10 C 0.268 3.732 11 O -0.479 6.479 12 C -0.119 4.119 13 N -0.034 5.034 14 N -0.266 5.266 15 C 0.141 3.859 16 C -0.203 4.203 17 C -0.101 4.101 18 C -0.193 4.193 19 C -0.101 4.101 20 C -0.184 4.184 21 C 0.047 3.953 22 H 0.111 0.889 23 C -0.093 4.093 24 C -0.109 4.109 25 C -0.135 4.135 26 C -0.137 4.137 27 C -0.139 4.139 28 C -0.129 4.129 29 C -0.141 4.141 30 H 0.089 0.911 31 H 0.237 0.763 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.121 0.879 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.803 -17.648 -2.629 18.763 hybrid contribution 0.409 0.213 -0.056 0.464 sum -5.394 -17.435 -2.685 18.447 Atomic orbital electron populations 1.69628 1.06264 1.29126 1.46225 1.25495 0.95702 1.00375 0.96236 0.85736 0.79354 0.79834 0.78745 1.19969 1.20577 1.18943 1.19920 0.93934 0.81915 1.46868 0.87012 1.41903 1.10138 1.04437 1.58380 1.16108 0.86721 0.81271 0.89070 1.90694 1.12168 1.85958 1.59124 1.25150 0.90150 0.96752 0.99871 1.75061 1.14552 1.00653 1.13152 1.48277 1.02665 1.00263 1.75355 1.17267 0.80331 0.92726 0.95553 1.20612 0.97137 0.93205 1.09395 1.20777 0.91879 0.99080 0.98367 1.20929 0.98852 0.93131 1.06394 1.20946 0.95580 0.95864 0.97689 1.20860 0.91521 0.99863 1.06121 1.21114 0.86130 0.92072 0.95978 0.88932 1.19978 1.00015 0.94484 0.94849 1.21006 0.97871 1.00011 0.92017 1.21151 0.99765 0.94332 0.98297 1.21154 0.99014 0.95697 0.97854 1.21064 1.00338 0.99707 0.92816 1.20942 0.99938 0.93107 0.98877 1.21959 0.97025 0.89544 1.05599 0.91112 0.76260 0.86265 0.86337 0.86611 0.86030 0.84853 0.86216 0.86079 0.86197 0.86030 0.85914 0.87896 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.99 13.05 55.50 0.72 -22.27 16 2 C 0.03 0.71 5.50 -17.45 -0.10 0.62 16 3 Si 0.94 19.97 29.55 -169.99 -5.02 14.94 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.30 -7.98 9.68 -15.03 -0.15 -8.13 16 8 H 0.11 3.10 7.15 -52.49 -0.38 2.73 16 9 N -0.51 -13.27 5.27 -12.33 -0.07 -13.33 16 10 C 0.48 11.80 7.72 -13.10 -0.10 11.70 16 11 O -0.59 -16.03 16.49 5.13 0.08 -15.95 16 12 C 0.07 1.48 7.26 -80.15 -0.58 0.90 16 13 N -0.23 -4.37 10.89 34.91 0.38 -3.99 16 14 N -0.47 -7.69 3.00 -52.31 -0.16 -7.85 16 15 C 0.24 3.73 6.36 -83.79 -0.53 3.20 16 16 C -0.18 -2.42 9.05 -39.36 -0.36 -2.77 16 17 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 18 C -0.17 -2.03 10.04 -39.53 -0.40 -2.43 16 19 C -0.08 -1.07 10.04 -39.61 -0.40 -1.47 16 20 C -0.16 -2.52 9.64 -39.36 -0.38 -2.90 16 21 C 0.15 2.15 3.00 -68.16 -0.20 1.95 16 22 H 0.09 1.15 8.07 -51.93 -0.42 0.73 16 23 C -0.09 -1.18 3.04 -104.63 -0.32 -1.50 16 24 C -0.09 -1.26 9.14 -39.58 -0.36 -1.62 16 25 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 26 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 27 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 28 C -0.11 -1.17 9.62 -39.59 -0.38 -1.55 16 29 C -0.10 -1.62 6.38 -27.05 -0.17 -1.79 16 30 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.40 10.27 7.51 -40.82 -0.31 9.96 16 32 H 0.12 1.49 6.30 -52.49 -0.33 1.16 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.13 2.27 7.66 -52.49 -0.40 1.87 16 37 H 0.12 1.92 7.58 -52.48 -0.40 1.53 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.10 1.64 7.73 -51.93 -0.40 1.24 16 43 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -29.87 371.08 -9.63 -39.51 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -5.15 Total: 15.49 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -6.02 Total: -12.15 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.88 Total: -47.44 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.08 Total: -15.95 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.87 -9.63 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.408 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds