Wall clock time and date at job start Tue Mar 31 2020 05:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00147 * 2 1 4 4 H 1.48493 * 109.47187 * 269.99956 * 3 2 1 5 5 H 1.48506 * 109.47345 * 29.99856 * 3 2 1 6 6 H 1.48499 * 109.47185 * 149.99475 * 3 2 1 7 7 C 1.37880 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99919 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99604 * 179.97438 * 7 2 1 10 10 S 1.81405 * 109.46876 * 180.02562 * 9 7 2 11 11 C 1.76198 * 102.99950 * 180.02562 * 10 9 7 12 12 N 1.31414 * 126.33955 * 359.97438 * 11 10 9 13 13 N 1.28664 * 110.29328 * 179.97438 * 12 11 10 14 14 C 1.32017 * 109.68412 * 359.97438 * 13 12 11 15 15 C 1.41049 * 133.51209 * 180.02562 * 14 13 12 16 16 Cl 1.73595 * 120.39130 * 359.97438 * 15 14 13 17 17 C 1.36015 * 119.22053 * 180.02562 * 15 14 13 18 18 C 1.40746 * 119.85585 * 359.97438 * 17 15 14 19 19 C 1.50693 * 119.77900 * 179.97438 * 18 17 15 20 20 F 1.39899 * 109.47472 * 270.02600 * 19 18 17 21 21 F 1.39898 * 109.47235 * 30.02845 * 19 18 17 22 22 F 1.39905 * 109.47376 * 150.02547 * 19 18 17 23 23 C 1.34796 * 120.44316 * 0.02562 * 18 17 15 24 24 N 1.36348 * 126.33871 * 179.97438 * 11 10 9 25 25 H 0.97002 * 119.99611 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47174 * 60.01062 * 9 7 2 27 27 H 1.08991 * 109.47559 * 300.00197 * 9 7 2 28 28 H 1.08003 * 120.07507 * 180.02562 * 17 15 14 29 29 H 1.08004 * 119.75298 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 16 4.1161 -2.9044 0.0001 11 6 5.8669 -2.7059 0.0001 12 7 6.5213 -1.5663 -0.0004 13 7 7.7900 -1.7804 0.0004 14 6 8.0217 -3.0800 0.0020 15 6 9.1992 -3.8566 0.0038 16 17 10.7568 -3.0900 0.0036 17 6 9.1000 -5.2131 0.0047 18 6 7.8315 -5.8228 0.0043 19 6 7.7235 -7.3259 0.0047 20 9 7.6913 -7.7915 -1.3141 21 9 8.8288 -7.8726 0.6654 22 9 6.5502 -7.7091 0.6633 23 6 6.7124 -5.0713 0.0026 24 7 6.7934 -3.7062 0.0007 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6798 0.8895 27 1 3.8745 -0.6809 -0.8904 28 1 9.9926 -5.8211 0.0066 29 1 5.7447 -5.5509 0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060385887.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:34 Heat of formation + Delta-G solvation = -46.071648 kcal Electronic energy + Delta-G solvation = -23387.725044 eV Core-core repulsion = 19050.234932 eV Total energy + Delta-G solvation = -4337.490112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 336.996 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.64633 -48.15560 -48.08365 -43.73221 -38.90288 -37.19104 -34.25353 -33.26098 -32.37132 -30.09175 -29.51392 -26.88113 -24.66628 -23.42586 -23.01048 -22.63468 -19.66653 -19.10582 -18.97061 -18.15530 -17.70050 -17.14411 -16.96805 -16.61804 -15.97987 -15.18347 -14.89349 -14.76843 -14.51815 -14.43678 -14.24308 -14.22558 -13.86838 -13.53619 -12.99183 -12.96026 -12.85563 -12.84048 -12.55825 -11.94184 -11.54081 -11.23906 -11.18192 -10.93029 -10.86115 -10.46209 -10.29055 -9.99217 -9.55806 -9.01708 -8.84560 -7.26263 -6.36329 -4.43643 -0.17414 0.39820 0.92074 1.48498 1.89199 2.19395 2.31988 2.68972 2.86686 3.15968 3.18012 3.26513 3.31248 3.48511 3.58395 3.87598 3.94816 4.05902 4.19821 4.52064 4.78894 4.96212 4.97175 5.12769 5.45411 5.48975 6.16333 6.42307 6.45917 7.13886 8.04352 8.19558 8.58329 9.17245 10.74210 Molecular weight = 337.00amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.003460 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.873649 B = 8090.751096 C = 9765.829500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.091 3.909 3 Si 0.874 3.126 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.531 4.531 8 H 0.087 0.913 9 C 0.036 3.964 10 S 0.004 5.996 11 C 0.166 3.834 12 N -0.251 5.251 13 N -0.245 5.245 14 C 0.183 3.817 15 C 0.015 3.985 16 Cl -0.008 7.008 17 C -0.061 4.061 18 C -0.211 4.211 19 C 0.531 3.469 20 F -0.168 7.168 21 F -0.168 7.168 22 F -0.170 7.170 23 C 0.170 3.830 24 N -0.389 5.389 25 H 0.272 0.728 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.166 0.834 29 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.901 -15.046 0.034 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.116 4.116 3 Si 0.699 3.301 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.570 4.570 8 H 0.105 0.895 9 C -0.112 4.112 10 S 0.235 5.765 11 C -0.202 4.202 12 N -0.094 5.094 13 N -0.088 5.088 14 C -0.072 4.072 15 C -0.016 4.016 16 Cl 0.021 6.979 17 C -0.087 4.087 18 C -0.218 4.218 19 C 0.476 3.524 20 F -0.149 7.149 21 F -0.149 7.149 22 F -0.151 7.151 23 C 0.045 3.955 24 N -0.073 5.073 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.184 0.816 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 18.362 -14.098 0.033 23.150 hybrid contribution 0.975 0.519 -0.020 1.104 sum 19.337 -13.580 0.013 23.629 Atomic orbital electron populations 1.69834 1.06174 1.27841 1.47955 1.24738 0.94742 0.98779 0.93379 0.86844 0.80679 0.83145 0.79384 1.19517 1.20534 1.18264 1.20263 0.85887 0.95695 1.55191 0.89545 1.21858 1.00912 0.86535 1.01880 1.85667 0.80829 1.20346 1.89634 1.27814 1.00777 0.84286 1.07277 1.74897 0.97845 1.19419 1.17211 1.74791 1.08027 1.08818 1.17184 1.21741 0.85601 0.91064 1.08782 1.19139 0.85826 0.90767 1.05827 1.98420 1.21649 1.81523 1.96328 1.20599 0.97318 0.92428 0.98328 1.19253 0.94169 0.92704 1.15656 1.17527 0.74213 0.86365 0.74333 1.93278 1.96082 1.90041 1.35496 1.93226 1.53450 1.87256 1.80942 1.93253 1.48307 1.92439 1.81076 1.21516 1.01211 0.80665 0.92107 1.43584 1.07618 1.05930 1.50207 0.91783 0.92611 0.93087 0.81630 0.79248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 13.96 55.43 0.77 -24.41 15 2 C 0.09 2.45 5.47 -17.82 -0.10 2.35 15 3 Si 0.87 20.34 27.47 -169.99 -4.67 15.67 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.26 -5.91 6.54 56.52 0.37 -5.54 15 7 C -0.53 -13.94 9.68 -34.44 -0.33 -14.27 15 8 H 0.09 2.42 7.96 -52.48 -0.42 2.00 15 9 C 0.04 0.82 4.42 36.00 0.16 0.98 15 10 S 0.00 0.07 22.03 -107.50 -2.37 -2.30 15 11 C 0.17 2.96 8.23 -88.41 -0.73 2.23 15 12 N -0.25 -5.00 11.81 30.66 0.36 -4.64 15 13 N -0.25 -4.49 12.28 31.24 0.38 -4.11 15 14 C 0.18 2.77 7.75 -155.71 -1.21 1.56 15 15 C 0.02 0.18 6.34 -39.32 -0.25 -0.07 15 16 Cl -0.01 -0.09 28.99 -51.86 -1.50 -1.59 15 17 C -0.06 -0.54 9.19 -39.43 -0.36 -0.90 15 18 C -0.21 -1.91 5.43 -104.90 -0.57 -2.48 15 19 C 0.53 4.25 3.35 36.00 0.12 4.37 15 20 F -0.17 -1.42 17.30 2.25 0.04 -1.38 15 21 F -0.17 -1.30 16.48 2.25 0.04 -1.26 15 22 F -0.17 -1.43 16.39 2.25 0.04 -1.39 15 23 C 0.17 1.83 10.31 -16.58 -0.17 1.66 15 24 N -0.39 -5.72 2.98 -62.67 -0.19 -5.90 15 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 26 H 0.06 1.29 7.20 -51.93 -0.37 0.91 15 27 H 0.05 1.16 7.57 -51.93 -0.39 0.77 15 28 H 0.17 0.98 7.64 -52.48 -0.40 0.58 15 29 H 0.19 1.63 7.51 -52.48 -0.39 1.24 15 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -29.17 306.79 -7.06 -36.23 By element: Atomic # 1 Polarization: -3.82 SS G_CDS: -1.15 Total: -4.96 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -3.44 Total: -4.57 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 1.33 Total: -39.06 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.11 Total: -4.03 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.37 Total: -2.30 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.50 Total: -1.59 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.17 -7.06 -36.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060385887.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.846 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds