Wall clock time and date at job start Tue Mar 31 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00250 * 2 1 4 4 H 1.48495 * 109.47604 * 269.99730 * 3 2 1 5 5 H 1.48505 * 109.47056 * 29.99769 * 3 2 1 6 6 H 1.48503 * 109.47246 * 149.99756 * 3 2 1 7 7 C 1.37876 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 185.96505 * 7 2 1 9 9 C 1.50699 * 119.99957 * 5.97059 * 7 2 1 10 10 H 1.09007 * 109.46969 * 33.01028 * 9 7 2 11 11 C 1.53001 * 109.47194 * 153.00848 * 9 7 2 12 12 C 1.54271 * 110.03239 * 297.90893 * 11 9 7 13 13 C 1.54967 * 104.15700 * 217.13475 * 12 11 9 14 14 C 1.54891 * 102.78001 * 37.88804 * 13 12 11 15 15 C 1.53871 * 110.03467 * 180.68917 * 11 9 7 16 16 N 1.46492 * 109.47372 * 273.00838 * 9 7 2 17 17 C 1.34619 * 125.85052 * 324.19296 * 16 9 7 18 18 C 1.36705 * 107.59626 * 179.97438 * 17 16 9 19 19 C 1.48029 * 126.27135 * 179.97438 * 18 17 16 20 20 N 1.33237 * 120.86671 * 325.00106 * 19 18 17 21 21 C 1.31957 * 121.01196 * 180.02562 * 20 19 18 22 22 N 1.31611 * 122.78010 * 359.97438 * 21 20 19 23 23 C 1.33048 * 120.77067 * 0.02562 * 22 21 20 24 24 N 1.36817 * 134.34051 * 180.02562 * 23 22 21 25 25 H 0.97008 * 124.98766 * 0.02808 * 24 23 22 26 26 C 1.37047 * 110.02215 * 179.97438 * 24 23 22 27 27 C 1.34369 * 109.84207 * 0.02562 * 26 24 23 28 28 C 1.40469 * 120.87190 * 145.02367 * 19 18 17 29 29 C 1.41041 * 107.45774 * 0.22519 * 18 17 16 30 30 N 1.30585 * 108.05247 * 359.61463 * 29 18 17 31 31 H 0.97004 * 119.99454 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.01674 * 59.30074 * 11 9 7 33 33 H 1.08994 * 110.48450 * 335.78394 * 12 11 9 34 34 H 1.09000 * 110.48666 * 98.42896 * 12 11 9 35 35 H 1.09000 * 110.72175 * 279.57028 * 13 12 11 36 36 H 1.08996 * 110.92163 * 156.29931 * 13 12 11 37 37 H 1.08995 * 110.48715 * 203.40394 * 14 13 12 38 38 H 1.09001 * 110.59623 * 80.81382 * 14 13 12 39 39 H 1.08998 * 110.03970 * 238.57356 * 15 11 9 40 40 H 1.09004 * 110.03338 * 359.95244 * 15 11 9 41 41 H 1.08000 * 126.19947 * 359.97239 * 17 16 9 42 42 H 1.07998 * 118.60863 * 179.72000 * 21 20 19 43 43 H 1.07995 * 125.07965 * 179.97438 * 26 24 23 44 44 H 1.07999 * 126.58710 * 180.02562 * 27 26 24 45 45 H 1.08009 * 125.97336 * 179.74285 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0801 -1.1966 0.0977 9 6 1.2571 -2.4956 -0.1346 10 1 0.3830 -2.3485 -0.7691 11 6 2.1732 -3.5468 -0.7644 12 6 2.5909 -3.1029 -2.1816 13 6 2.6150 -4.4191 -2.9993 14 6 1.4004 -5.1962 -2.4336 15 6 1.4170 -4.8773 -0.9244 16 7 0.8280 -2.9522 1.1895 17 6 1.5185 -2.8062 2.3359 18 6 0.7764 -3.3640 3.3393 19 6 1.1489 -3.4316 4.7704 20 7 2.4185 -3.5972 5.1391 21 6 2.7537 -3.6583 6.4140 22 7 1.8736 -3.5611 7.3876 23 6 0.5806 -3.3940 7.1222 24 7 -0.5441 -3.2626 7.8902 25 1 -0.5597 -3.2737 8.8601 26 6 -1.6450 -3.1117 7.0882 27 6 -1.2757 -3.1406 5.7965 28 6 0.1732 -3.3232 5.7750 29 6 -0.4065 -3.8686 2.7603 30 7 -0.3707 -3.6146 1.4799 31 1 -0.4849 0.8401 -0.0004 32 1 3.0569 -3.6920 -0.1429 33 1 1.8585 -2.4100 -2.5956 34 1 3.5807 -2.6468 -2.1623 35 1 3.5407 -4.9665 -2.8218 36 1 2.4844 -4.2190 -4.0628 37 1 1.5220 -6.2667 -2.5987 38 1 0.4744 -4.8438 -2.8879 39 1 1.9340 -5.6684 -0.3813 40 1 0.3975 -4.7744 -0.5525 41 1 2.4838 -2.3339 2.4433 42 1 3.7938 -3.7980 6.6690 43 1 -2.6581 -2.9889 7.4414 44 1 -1.9254 -3.0459 4.9390 45 1 -1.2038 -4.3746 3.2847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063539381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:03 Heat of formation + Delta-G solvation = 139.427982 kcal Electronic energy + Delta-G solvation = -28744.401770 eV Core-core repulsion = 24956.284279 eV Total energy + Delta-G solvation = -3788.117491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.160 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57548 -40.14258 -38.29590 -37.63488 -34.04588 -33.39624 -31.56245 -30.84147 -29.83339 -28.92539 -28.27313 -27.83004 -25.93786 -24.12321 -23.25943 -22.49598 -20.75549 -20.22455 -20.05370 -19.78634 -18.68655 -18.34614 -16.87594 -16.82316 -15.99350 -15.23347 -15.18467 -15.12160 -14.71144 -14.48077 -14.29127 -13.69221 -13.44941 -13.15800 -12.98487 -12.86729 -12.79905 -12.71586 -12.55561 -11.92124 -11.67253 -11.40835 -11.10579 -10.66557 -10.64167 -10.58063 -10.51844 -10.50979 -10.43720 -10.15212 -10.11702 -9.80903 -9.57254 -9.34501 -8.93838 -8.86945 -8.82133 -8.33411 -8.15334 -7.20204 -6.43430 -4.60633 1.03786 1.63618 2.72621 2.79614 3.08034 3.13965 3.20604 3.22779 3.58050 3.73885 4.13089 4.35222 4.56997 4.58992 4.89062 4.91999 5.04917 5.21162 5.25015 5.32096 5.35328 5.58379 5.75591 5.83714 5.92877 5.95305 6.01602 6.07034 6.13753 6.18713 6.25258 6.37140 6.40543 6.44672 6.55188 6.62912 6.67735 6.71643 6.77699 6.85108 6.95307 7.00706 7.03736 7.14639 7.26914 7.45565 7.54521 7.65026 7.83153 8.31203 8.56373 8.59222 8.87141 9.14099 10.60916 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011223 B = 0.003739 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.206099 B = 7487.796570 C = 8573.167660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.080 3.920 3 Si 0.899 3.101 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.070 0.930 9 C 0.265 3.735 10 H 0.083 0.917 11 C -0.090 4.090 12 C -0.096 4.096 13 C -0.128 4.128 14 C -0.121 4.121 15 C -0.126 4.126 16 N -0.300 5.300 17 C 0.143 3.857 18 C -0.263 4.263 19 C 0.346 3.654 20 N -0.550 5.550 21 C 0.321 3.679 22 N -0.561 5.561 23 C 0.316 3.684 24 N -0.577 5.577 25 H 0.417 0.583 26 C 0.033 3.967 27 C -0.155 4.155 28 C -0.212 4.212 29 C 0.054 3.946 30 N -0.309 5.309 31 H 0.270 0.730 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.166 0.834 42 H 0.193 0.807 43 H 0.178 0.822 44 H 0.155 0.845 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -6.486 7.295 9.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.170 3.830 10 H 0.101 0.899 11 C -0.110 4.110 12 C -0.135 4.135 13 C -0.165 4.165 14 C -0.159 4.159 15 C -0.164 4.164 16 N -0.076 5.076 17 C -0.014 4.014 18 C -0.277 4.277 19 C 0.197 3.803 20 N -0.268 5.268 21 C 0.031 3.969 22 N -0.283 5.283 23 C 0.076 3.924 24 N -0.185 5.185 25 H 0.254 0.746 26 C -0.091 4.091 27 C -0.181 4.181 28 C -0.221 4.221 29 C -0.133 4.133 30 N -0.129 5.129 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.183 0.817 42 H 0.210 0.790 43 H 0.195 0.805 44 H 0.172 0.828 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.588 -6.571 6.395 9.188 hybrid contribution -0.037 1.226 1.408 1.867 sum -0.624 -5.345 7.803 9.478 Atomic orbital electron populations 1.69999 1.06298 1.28009 1.44302 1.25181 0.94854 1.00118 0.92787 0.86456 0.80093 0.82246 0.78630 1.19946 1.20934 1.19230 1.21208 0.93850 0.89140 1.53034 0.91166 1.19622 0.95291 0.90635 0.77493 0.89914 1.22077 0.98019 0.94105 0.96755 1.22172 1.01442 0.95946 0.93891 1.22560 0.97825 0.97299 0.98861 1.22322 0.98329 0.98803 0.96431 1.22297 1.01761 0.97012 0.95313 1.51001 1.10657 1.37190 1.08773 1.22330 0.97449 0.95857 0.85726 1.18226 0.99853 1.19286 0.90322 1.19038 0.86188 0.83500 0.91564 1.68627 1.18941 1.19615 1.19568 1.24498 0.98358 0.91020 0.83026 1.67272 0.99472 1.22260 1.39298 1.18368 0.87529 0.97935 0.88559 1.41447 1.04070 1.64160 1.08838 0.74592 1.21883 0.91074 1.05860 0.90281 1.21708 0.92623 1.07453 0.96340 1.20450 0.96076 1.11892 0.93717 1.23519 0.96825 1.01056 0.91923 1.77063 1.04757 1.15796 1.15263 0.91967 0.92178 0.90961 0.92018 0.92340 0.92355 0.92837 0.91980 0.93300 0.90646 0.81696 0.79048 0.80506 0.82788 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.72 12.99 55.43 0.72 -22.00 16 2 C 0.08 2.01 5.45 -17.82 -0.10 1.91 16 3 Si 0.90 19.53 29.54 -169.99 -5.02 14.51 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.53 -12.79 6.97 -34.44 -0.24 -13.03 16 8 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.26 6.00 1.87 -69.09 -0.13 5.87 16 10 H 0.08 2.14 7.64 -51.93 -0.40 1.74 16 11 C -0.09 -1.73 2.68 -89.50 -0.24 -1.97 16 12 C -0.10 -1.67 5.75 -25.03 -0.14 -1.82 16 13 C -0.13 -1.87 6.91 -24.70 -0.17 -2.04 16 14 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 15 C -0.13 -2.26 6.20 -25.61 -0.16 -2.41 16 16 N -0.30 -6.75 3.10 -55.71 -0.17 -6.93 16 17 C 0.14 3.11 10.54 -16.88 -0.18 2.93 16 18 C -0.26 -5.31 5.88 -105.38 -0.62 -5.93 16 19 C 0.35 6.53 6.73 -82.40 -0.55 5.98 16 20 N -0.55 -10.00 10.37 -10.98 -0.11 -10.11 16 21 C 0.32 5.02 12.23 -92.17 -1.13 3.90 16 22 N -0.56 -8.98 10.46 -13.88 -0.15 -9.13 16 23 C 0.32 4.95 8.48 -155.87 -1.32 3.63 16 24 N -0.58 -6.65 6.03 -12.11 -0.07 -6.72 16 25 H 0.42 3.46 8.96 -40.82 -0.37 3.09 16 26 C 0.03 0.35 11.83 -16.59 -0.20 0.15 16 27 C -0.15 -2.14 10.33 -37.82 -0.39 -2.53 16 28 C -0.21 -3.59 6.14 -104.91 -0.64 -4.23 16 29 C 0.05 1.05 11.08 -17.02 -0.19 0.86 16 30 N -0.31 -6.83 11.48 30.83 0.35 -6.47 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.36 7.84 -51.93 -0.41 0.95 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.50 6.47 -51.93 -0.34 1.16 16 41 H 0.17 3.52 7.89 -52.49 -0.41 3.11 16 42 H 0.19 2.24 8.06 -52.49 -0.42 1.81 16 43 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.15 2.00 7.30 -52.49 -0.38 1.62 16 45 H 0.17 2.66 7.37 -52.48 -0.39 2.28 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -29.65 373.90 -11.43 -41.08 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.04 Total: 10.89 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -6.57 Total: -10.76 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.57 Total: -61.36 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.65 -11.43 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063539381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.511 kcal (2) G-P(sol) polarization free energy of solvation -29.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds