Wall clock time and date at job start Tue Mar 31 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21721 * 119.99636 * 0.02562 * 13 12 2 15 15 C 1.46570 * 119.99865 * 180.02562 * 13 12 2 16 16 C 1.40657 * 126.53917 * 0.02562 * 15 13 12 17 17 N 1.30686 * 108.73062 * 179.97438 * 16 15 13 18 18 N 1.39870 * 109.51005 * 359.97438 * 17 16 15 19 19 C 1.36600 * 108.16436 * 359.76613 * 18 17 16 20 20 N 1.33312 * 120.95758 * 179.67437 * 19 18 17 21 21 C 1.31628 * 121.30335 * 0.53253 * 20 19 18 22 22 C 1.39493 * 120.25507 * 359.73349 * 21 20 19 23 23 C 1.37195 * 132.19935 * 179.97438 * 18 17 16 24 24 C 1.47730 * 120.61614 * 0.02654 * 23 18 17 25 25 C 1.39631 * 120.14811 * 4.71768 * 24 23 18 26 26 C 1.37939 * 119.84732 * 179.77062 * 25 24 23 27 27 C 1.38374 * 120.14701 * 0.48985 * 26 25 24 28 28 C 1.38370 * 120.30670 * 359.78659 * 27 26 25 29 29 C 1.37948 * 120.14770 * 359.95496 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 34 34 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 35 35 H 1.07999 * 125.62943 * 359.95165 * 16 15 13 36 36 H 1.07994 * 119.86820 * 179.75219 * 21 20 19 37 37 H 1.08003 * 120.46250 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.07607 * 0.02562 * 25 24 23 39 39 H 1.08001 * 119.92642 * 180.27594 * 26 25 24 40 40 H 1.08007 * 119.84564 * 179.76731 * 27 26 25 41 41 H 1.07996 * 119.92598 * 179.97438 * 28 27 26 42 42 H 1.07995 * 120.07587 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8580 1.1628 -2.4116 15 6 2.6353 -0.7094 -3.5539 16 6 3.0063 -2.0630 -3.6465 17 7 3.3876 -2.3108 -4.8718 18 7 3.2865 -1.1445 -5.6373 19 6 2.8158 -0.1463 -4.8324 20 7 2.6279 1.0856 -5.3063 21 6 2.8785 1.3799 -6.5645 22 6 3.3558 0.3992 -7.4341 23 6 3.5609 -0.8807 -6.9554 24 6 4.0654 -1.9455 -7.8465 25 6 4.1752 -3.2569 -7.3800 26 6 4.6426 -4.2471 -8.2189 27 6 5.0119 -3.9413 -9.5169 28 6 4.9111 -2.6427 -9.9840 29 6 4.4402 -1.6437 -9.1573 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 0.7081 1.1610 3.4844 34 1 2.2490 -1.6317 -1.1525 35 1 2.9807 -2.7791 -2.8385 36 1 2.7141 2.3846 -6.9248 37 1 3.5630 0.6372 -8.4670 38 1 3.8909 -3.4963 -6.3659 39 1 4.7238 -5.2628 -7.8608 40 1 5.3807 -4.7197 -10.1684 41 1 5.2014 -2.4107 -10.9980 42 1 4.3617 -0.6306 -9.5232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:11 Heat of formation + Delta-G solvation = 115.487904 kcal Electronic energy + Delta-G solvation = -27269.982448 eV Core-core repulsion = 23410.419654 eV Total energy + Delta-G solvation = -3859.562794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.133 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51304 -39.62754 -38.54788 -37.81826 -34.83129 -34.47386 -32.37737 -31.82924 -31.23634 -30.61517 -29.64150 -28.23655 -25.32097 -25.17153 -24.24010 -22.84550 -22.57745 -22.14094 -20.59281 -19.27251 -18.40028 -17.61153 -17.39518 -16.91841 -16.29107 -16.06529 -15.58433 -15.37967 -15.03367 -14.98291 -14.30483 -14.12820 -13.81485 -13.77666 -13.46689 -13.34976 -13.15163 -12.93653 -12.72767 -12.29968 -11.98197 -11.65999 -11.58004 -11.40539 -11.17649 -11.01756 -10.87672 -10.61442 -10.21990 -10.15219 -9.84571 -9.81053 -9.42613 -9.24683 -8.93789 -8.90372 -8.46521 -7.95686 -7.63548 -6.04512 -4.13128 -0.22905 0.59082 0.94809 1.23048 1.72139 2.24915 3.10910 3.28631 3.36129 3.38915 3.43262 3.51389 3.76267 3.93925 4.23749 4.29443 4.33190 4.50231 4.52068 4.63971 4.71015 4.83916 4.92120 5.02673 5.07334 5.13792 5.19407 5.27747 5.43403 5.58903 5.72453 5.85970 5.94498 6.01147 6.06612 6.18435 6.39388 6.52088 6.95129 7.10030 7.21558 7.27401 7.57854 7.60813 7.70059 7.81687 8.03937 8.25134 8.81671 8.91129 9.33032 9.55336 11.01564 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.021642 B = 0.002436 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.454863 B =11493.063193 C =12523.357767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.267 3.733 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.579 3.421 14 O -0.541 6.541 15 C -0.267 4.267 16 C 0.127 3.873 17 N -0.321 5.321 18 N -0.305 5.305 19 C 0.317 3.683 20 N -0.436 5.436 21 C 0.179 3.821 22 C -0.223 4.223 23 C 0.240 3.760 24 C -0.081 4.081 25 C -0.084 4.084 26 C -0.126 4.126 27 C -0.097 4.097 28 C -0.128 4.128 29 C -0.083 4.083 30 H 0.025 0.975 31 H 0.015 0.985 32 H 0.089 0.911 33 H 0.263 0.737 34 H 0.384 0.616 35 H 0.207 0.793 36 H 0.184 0.816 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -8.056 -27.366 29.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.356 5.356 13 C 0.364 3.636 14 O -0.419 6.419 15 C -0.284 4.284 16 C -0.052 4.052 17 N -0.145 5.145 18 N -0.075 5.075 19 C 0.086 3.914 20 N -0.147 5.147 21 C -0.002 4.002 22 C -0.246 4.246 23 C 0.123 3.877 24 C -0.082 4.082 25 C -0.102 4.102 26 C -0.144 4.144 27 C -0.116 4.116 28 C -0.146 4.146 29 C -0.102 4.102 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.216 0.784 35 H 0.223 0.777 36 H 0.201 0.799 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.487 -7.508 -27.125 29.124 hybrid contribution 0.430 -0.934 0.802 1.304 sum 7.917 -8.442 -26.324 28.756 Atomic orbital electron populations 1.22075 0.98557 0.99029 1.00873 1.18712 0.90938 0.94021 0.79770 0.93312 1.21268 1.32153 1.13103 0.90330 0.92041 1.24889 0.94914 0.94992 0.99015 1.69921 1.36009 1.22534 1.23637 0.86410 0.78550 0.79519 0.82695 1.19762 1.20958 1.20948 1.46276 1.65943 1.13203 1.10165 1.16794 0.78523 0.86358 0.81887 1.90798 1.51206 1.15141 1.84794 1.19959 1.20725 0.94181 0.93516 1.24237 0.91424 0.95206 0.94329 1.77120 1.31290 1.01750 1.04298 1.47071 1.42363 1.10525 1.07499 1.20433 0.95254 0.84063 0.91651 1.68220 1.16618 1.14916 1.14905 1.23454 0.89150 1.00217 0.87399 1.22154 1.08096 0.90910 1.03476 1.19476 0.93709 0.94331 0.80199 1.18430 1.04160 0.92286 0.93356 1.22244 0.94719 0.91273 1.01995 1.21232 0.99517 0.99750 0.93868 1.21446 0.97490 0.96760 0.95874 1.21079 1.00616 0.92881 1.00027 1.21232 0.97122 1.00046 0.91842 0.95557 0.96578 0.89237 0.92715 0.78365 0.77682 0.79878 0.81470 0.82183 0.85242 0.85549 0.85187 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.46 16 2 C 0.27 7.08 2.56 -69.08 -0.18 6.90 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.53 -14.34 8.73 -34.44 -0.30 -14.64 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.42 11.32 55.43 0.63 -24.79 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.71 -15.68 5.06 -56.27 -0.28 -15.96 16 13 C 0.58 13.09 7.75 -12.90 -0.10 12.99 16 14 O -0.54 -14.43 16.39 5.17 0.08 -14.34 16 15 C -0.27 -4.97 6.17 -104.63 -0.65 -5.61 16 16 C 0.13 1.86 11.44 -17.13 -0.20 1.66 16 17 N -0.32 -4.61 9.46 30.77 0.29 -4.32 16 18 N -0.31 -4.49 3.86 -8.40 -0.03 -4.53 16 19 C 0.32 5.57 7.74 -155.87 -1.21 4.36 16 20 N -0.44 -7.27 10.23 -12.09 -0.12 -7.39 16 21 C 0.18 1.90 11.26 -17.17 -0.19 1.71 16 22 C -0.22 -1.92 9.48 -39.13 -0.37 -2.29 16 23 C 0.24 2.75 6.80 -81.61 -0.56 2.20 16 24 C -0.08 -0.79 5.87 -104.98 -0.62 -1.41 16 25 C -0.08 -0.85 9.49 -39.17 -0.37 -1.22 16 26 C -0.13 -0.98 10.03 -39.64 -0.40 -1.38 16 27 C -0.10 -0.61 10.04 -39.48 -0.40 -1.01 16 28 C -0.13 -0.75 10.03 -39.64 -0.40 -1.15 16 29 C -0.08 -0.57 9.44 -39.17 -0.37 -0.94 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 34 H 0.38 7.16 7.46 -40.82 -0.30 6.86 16 35 H 0.21 2.21 7.46 -52.49 -0.39 1.82 16 36 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.17 0.68 6.29 -52.48 -0.33 0.35 16 38 H 0.16 1.84 5.07 -52.48 -0.27 1.57 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 41 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.13 0.52 6.29 -52.49 -0.33 0.19 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -36.85 359.35 -9.50 -46.35 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.41 Total: 5.22 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -6.05 Total: -1.60 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.48 Total: -56.99 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.34 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.85 -9.50 -46.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.835 kcal (2) G-P(sol) polarization free energy of solvation -36.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds