Wall clock time and date at job start Tue Mar 31 2020 04:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99693 * 2 1 4 4 H 1.48498 * 109.47455 * 275.30905 * 3 2 1 5 5 H 1.48497 * 109.47317 * 35.30981 * 3 2 1 6 6 H 1.48507 * 109.47246 * 155.31192 * 3 2 1 7 7 C 1.38811 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99965 * 337.98724 * 7 2 1 9 9 N 1.36930 * 120.00343 * 157.98728 * 7 2 1 10 10 C 1.46502 * 120.00145 * 142.59192 * 9 7 2 11 11 C 1.50706 * 109.46859 * 274.36667 * 10 9 7 12 12 C 1.38229 * 119.99883 * 85.52337 * 11 10 9 13 13 C 1.38239 * 120.00295 * 179.97438 * 12 11 10 14 14 C 1.38232 * 119.99622 * 0.09231 * 13 12 11 15 15 C 1.38238 * 120.00215 * 359.86226 * 14 13 12 16 16 C 1.38233 * 119.99782 * 0.09443 * 15 14 13 17 17 C 1.46506 * 120.00116 * 322.59230 * 9 7 2 18 18 C 1.50702 * 109.46995 * 269.99861 * 17 9 7 19 19 N 1.30219 * 119.88154 * 0.02562 * 18 17 9 20 20 C 1.34675 * 121.05808 * 180.02562 * 19 18 17 21 21 C 1.40357 * 120.09043 * 179.97438 * 20 19 18 22 22 C 1.36406 * 119.97300 * 179.97438 * 21 20 19 23 23 C 1.38898 * 120.66813 * 0.04138 * 22 21 20 24 24 C 1.37748 * 120.51441 * 359.95298 * 23 22 21 25 25 C 1.39186 * 119.83097 * 0.02562 * 24 23 22 26 26 N 1.38045 * 120.34399 * 179.97438 * 25 24 23 27 27 H 0.97002 * 120.52249 * 0.05784 * 26 25 24 28 28 C 1.35106 * 118.95193 * 179.68209 * 26 25 24 29 29 O 1.21777 * 120.39974 * 180.28733 * 28 26 25 30 30 H 0.96997 * 120.00298 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47113 * 154.36854 * 10 9 7 32 32 H 1.08995 * 109.47248 * 34.36477 * 10 9 7 33 33 H 1.08004 * 120.00027 * 359.69476 * 12 11 10 34 34 H 1.07991 * 120.00294 * 179.97438 * 13 12 11 35 35 H 1.08005 * 120.00134 * 179.97438 * 14 13 12 36 36 H 1.08000 * 120.00349 * 180.02562 * 15 14 13 37 37 H 1.08002 * 120.00366 * 179.97438 * 16 15 14 38 38 H 1.08999 * 109.46772 * 29.99864 * 17 9 7 39 39 H 1.09000 * 109.47032 * 149.99758 * 17 9 7 40 40 H 1.08001 * 120.01615 * 359.97438 * 21 20 19 41 41 H 1.07993 * 119.66114 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.73784 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.08667 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3854 2.1113 -1.3940 5 1 1.5081 2.6177 0.8092 6 1 3.5993 1.4105 0.5848 7 6 2.0103 -1.2021 -0.0005 8 1 1.5294 -2.1035 0.3496 9 7 3.3047 -1.2451 -0.4450 10 6 4.2792 -2.1135 0.2203 11 6 4.8749 -1.3888 1.3998 12 6 4.2315 -1.4136 2.6230 13 6 4.7781 -0.7494 3.7051 14 6 5.9671 -0.0587 3.5634 15 6 6.6110 -0.0347 2.3404 16 6 6.0648 -0.6997 1.2586 17 6 3.7152 -0.4227 -1.5859 18 6 3.5169 -1.1993 -2.8621 19 7 3.0430 -2.4114 -2.8170 20 6 2.8568 -3.1269 -3.9426 21 6 2.3452 -4.4319 -3.8703 22 6 2.1570 -5.1543 -5.0120 23 6 2.4678 -4.6124 -6.2526 24 6 2.9711 -3.3340 -6.3512 25 6 3.1711 -2.5779 -5.1998 26 7 3.6754 -1.2958 -5.2863 27 1 3.8942 -0.9096 -6.1488 28 6 3.8522 -0.5846 -4.1512 29 8 4.2904 0.5506 -4.1973 30 1 -0.4850 0.8400 0.0004 31 1 5.0704 -2.3766 -0.4819 32 1 3.7823 -3.0205 0.5643 33 1 3.2995 -1.9483 2.7322 34 1 4.2753 -0.7684 4.6606 35 1 6.3940 0.4606 4.4087 36 1 7.5402 0.5046 2.2297 37 1 6.5676 -0.6806 0.3029 38 1 3.1121 0.4847 -1.6153 39 1 4.7672 -0.1567 -1.4821 40 1 2.1006 -4.8640 -2.9112 41 1 1.7627 -6.1578 -4.9506 42 1 2.3132 -5.1980 -7.1469 43 1 3.2100 -2.9194 -7.3193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065466286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:03 Heat of formation + Delta-G solvation = 79.925267 kcal Electronic energy + Delta-G solvation = -28387.751499 eV Core-core repulsion = 24592.072504 eV Total energy + Delta-G solvation = -3795.678995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30323 -38.71866 -38.55319 -36.64534 -35.62343 -34.70370 -31.98013 -31.24134 -30.30550 -30.15977 -29.48091 -27.15757 -25.73351 -24.10414 -23.20522 -22.65562 -21.95771 -21.80014 -20.11561 -18.56755 -18.40020 -17.78869 -16.58842 -16.17776 -15.78172 -15.46174 -15.22344 -15.08306 -14.65453 -14.60503 -14.41259 -14.06986 -13.79165 -13.43182 -13.28226 -12.88477 -12.75341 -12.66735 -12.28121 -12.11735 -11.88294 -11.79477 -11.65964 -11.20444 -10.94528 -10.92206 -10.79038 -10.68216 -10.42176 -10.28507 -10.07612 -9.56570 -8.95673 -8.62012 -8.54725 -8.33279 -8.11306 -7.84136 -6.94280 -5.99688 -3.40136 0.46312 1.15704 1.95082 2.00094 2.06483 2.78990 3.08588 3.36649 3.51730 3.59895 4.11964 4.16747 4.35947 4.42060 4.54117 4.61074 4.80652 5.08850 5.11883 5.25283 5.34895 5.40197 5.43132 5.49239 5.58340 5.70415 5.79705 5.82481 6.00897 6.02852 6.09719 6.11450 6.22206 6.26263 6.36705 6.42852 6.56095 6.57844 6.64587 6.70714 6.72717 6.83035 7.01313 7.07845 7.34947 7.61994 7.86495 7.99973 8.23395 8.38446 8.92417 9.68476 10.05835 11.15093 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.004036 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.488423 B = 6935.363815 C = 7265.715206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.039 3.961 3 Si 0.854 3.146 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.257 1.257 7 C -0.251 4.251 8 H 0.084 0.916 9 N -0.571 5.571 10 C 0.187 3.813 11 C -0.083 4.083 12 C -0.092 4.092 13 C -0.127 4.127 14 C -0.139 4.139 15 C -0.130 4.130 16 C -0.121 4.121 17 C 0.192 3.808 18 C 0.115 3.885 19 N -0.370 5.370 20 C 0.042 3.958 21 C -0.035 4.035 22 C -0.148 4.148 23 C -0.076 4.076 24 C -0.161 4.161 25 C 0.131 3.869 26 N -0.626 5.626 27 H 0.411 0.589 28 C 0.495 3.505 29 O -0.519 6.519 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 -8.693 -7.718 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.162 4.162 3 Si 0.683 3.317 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.181 1.181 7 C -0.379 4.379 8 H 0.101 0.899 9 N -0.288 5.288 10 C 0.062 3.938 11 C -0.085 4.085 12 C -0.111 4.111 13 C -0.145 4.145 14 C -0.157 4.157 15 C -0.148 4.148 16 C -0.139 4.139 17 C 0.063 3.937 18 C -0.068 4.068 19 N -0.081 5.081 20 C -0.070 4.070 21 C -0.054 4.054 22 C -0.167 4.167 23 C -0.095 4.095 24 C -0.182 4.182 25 C 0.027 3.973 26 N -0.268 5.268 27 H 0.250 0.750 28 C 0.284 3.716 29 O -0.392 6.392 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.748 -8.534 -6.936 14.052 hybrid contribution 0.476 1.845 -1.439 2.388 sum 9.224 -6.689 -8.375 14.141 Atomic orbital electron populations 1.69851 1.05901 1.26645 1.51137 1.25425 0.95030 0.97496 0.98200 0.87247 0.81707 0.85362 0.77360 1.21105 1.22690 1.18122 1.18692 0.85436 0.94128 1.39667 0.89883 1.43836 1.07548 1.49916 1.27541 1.19945 0.91355 0.92763 0.89732 1.20991 0.93303 0.97996 0.96260 1.21091 0.98951 0.98893 0.92183 1.21104 0.96117 0.98483 0.98798 1.20944 0.96576 1.00949 0.97251 1.20978 0.99905 1.00336 0.93574 1.20997 0.96403 0.98515 0.98029 1.20267 0.99304 0.92781 0.81325 1.26433 0.94328 0.91618 0.94378 1.68023 1.06423 1.06269 1.27418 1.18705 1.05226 0.96508 0.86521 1.20867 0.93896 0.90873 0.99772 1.20783 1.03089 1.00843 0.92018 1.21057 0.96227 0.94203 0.98041 1.20689 1.05679 0.95621 0.96193 1.18950 0.97236 0.85092 0.96024 1.43824 1.58603 1.13190 1.11140 0.74987 1.20300 0.79266 0.86495 0.85575 1.90888 1.44569 1.17071 1.86674 0.92742 0.93247 0.91800 0.85781 0.86915 0.87234 0.87185 0.87079 0.89753 0.90878 0.83930 0.85168 0.85321 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.97 55.49 0.78 -26.11 16 2 C 0.04 1.11 5.31 -17.43 -0.09 1.02 16 3 Si 0.85 22.23 25.01 -169.99 -4.25 17.98 16 4 H -0.28 -7.42 6.67 56.52 0.38 -7.04 16 5 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.60 9.92 -15.06 -0.15 -6.75 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 N -0.57 -12.84 1.48 -175.98 -0.26 -13.10 16 10 C 0.19 3.58 5.80 -5.19 -0.03 3.55 16 11 C -0.08 -1.55 5.44 -104.62 -0.57 -2.12 16 12 C -0.09 -1.71 9.72 -39.58 -0.38 -2.10 16 13 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 14 C -0.14 -2.18 10.05 -39.58 -0.40 -2.58 16 15 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 16 C -0.12 -2.08 9.68 -39.58 -0.38 -2.47 16 17 C 0.19 4.23 4.50 -5.19 -0.02 4.21 16 18 C 0.11 2.35 6.97 -79.86 -0.56 1.79 16 19 N -0.37 -7.29 9.52 -5.57 -0.05 -7.34 16 20 C 0.04 0.69 6.57 -84.88 -0.56 0.13 16 21 C -0.04 -0.48 9.95 -39.45 -0.39 -0.87 16 22 C -0.15 -1.54 9.96 -40.00 -0.40 -1.94 16 23 C -0.08 -0.72 10.02 -39.52 -0.40 -1.12 16 24 C -0.16 -1.72 9.91 -39.41 -0.39 -2.11 16 25 C 0.13 1.87 6.62 -83.77 -0.55 1.32 16 26 N -0.63 -9.26 5.41 -10.86 -0.06 -9.32 16 27 H 0.41 4.73 8.83 -40.82 -0.36 4.37 16 28 C 0.49 9.35 7.91 -12.69 -0.10 9.25 16 29 O -0.52 -10.91 17.52 5.12 0.09 -10.82 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.05 0.86 7.95 -51.93 -0.41 0.44 16 32 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 33 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.09 2.11 3.21 -51.93 -0.17 1.94 16 39 H 0.07 1.47 8.07 -51.93 -0.42 1.06 16 40 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -32.91 367.22 -9.56 -42.47 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.17 Total: 6.47 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -6.17 Total: -5.77 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.40 Total: -55.87 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.25 Total: 17.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.91 -9.56 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065466286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.397 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds