Wall clock time and date at job start Tue Mar 31 2020 04:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47006 * 179.97438 * 9 7 2 11 11 N 1.40061 * 125.87003 * 269.68411 * 10 9 7 12 12 C 1.30247 * 109.69339 * 179.87257 * 11 10 9 13 13 C 1.41164 * 108.46934 * 0.38872 * 12 11 10 14 14 C 1.36314 * 125.87290 * 89.99810 * 10 9 7 15 15 N 1.33198 * 134.62354 * 359.95796 * 14 10 9 16 16 C 1.31500 * 120.68466 * 180.02562 * 15 14 10 17 17 N 1.32132 * 122.64790 * 0.02562 * 16 15 14 18 18 C 1.32858 * 121.18807 * 359.97438 * 17 16 15 19 19 N 1.38113 * 120.80600 * 180.02562 * 18 17 16 20 20 C 1.46502 * 120.00293 * 0.02562 * 19 18 17 21 21 H 1.09001 * 110.26207 * 325.69405 * 20 19 18 22 22 C 1.54347 * 110.30045 * 203.62837 * 20 19 18 23 23 C 1.54353 * 102.38746 * 214.72517 * 22 20 19 24 24 C 1.51373 * 105.16901 * 26.34600 * 23 22 20 25 25 C 1.38494 * 130.39187 * 162.81405 * 24 23 22 26 26 C 1.38102 * 120.21721 * 179.97438 * 25 24 23 27 27 C 1.38250 * 119.93490 * 359.97438 * 26 25 24 28 28 C 1.38104 * 119.93291 * 0.02562 * 27 26 25 29 29 C 1.38353 * 120.26656 * 359.91055 * 28 27 26 30 30 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 32 32 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 33 33 H 1.08005 * 125.76543 * 180.14614 * 12 11 10 34 34 H 1.08003 * 118.67583 * 180.02562 * 16 15 14 35 35 H 0.97003 * 119.99325 * 180.02562 * 19 18 17 36 36 H 1.08997 * 110.82110 * 332.94805 * 22 20 19 37 37 H 1.08995 * 110.82723 * 96.50149 * 22 20 19 38 38 H 1.08995 * 110.30133 * 145.26855 * 23 22 20 39 39 H 1.08996 * 110.30341 * 267.32467 * 23 22 20 40 40 H 1.08008 * 119.89206 * 359.97290 * 25 24 23 41 41 H 1.08002 * 120.03245 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.03439 * 180.02562 * 27 26 25 43 43 H 1.08008 * 119.89011 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 7 2.7318 -4.2404 -1.1344 12 6 3.5483 -5.1881 -0.7716 13 6 3.5855 -5.2306 0.6389 14 6 2.7223 -4.2197 1.1051 15 7 2.5800 -4.0521 2.4188 16 6 3.2331 -4.8154 3.2674 17 7 4.0536 -5.7749 2.8774 18 6 4.2623 -6.0200 1.5885 19 7 5.1213 -7.0253 1.1897 20 6 5.8150 -7.8369 2.1929 21 1 6.0561 -7.2319 3.0669 22 6 7.0995 -8.4471 1.5929 23 6 7.1741 -9.8191 2.2963 24 6 5.7427 -10.1610 2.6504 25 6 5.1690 -11.3729 2.9972 26 6 3.8201 -11.4464 3.2841 27 6 3.0392 -10.3071 3.2257 28 6 3.6095 -9.0978 2.8800 29 6 4.9608 -9.0206 2.5933 30 1 -0.4850 -0.8401 -0.0004 31 1 0.6242 -2.5567 0.8904 32 1 0.6248 -2.5571 -0.8896 33 1 4.1004 -5.8349 -1.4374 34 1 3.0931 -4.6515 4.3257 35 1 5.2652 -7.1939 0.2453 36 1 7.0031 -8.5695 0.5142 37 1 7.9693 -7.8380 1.8387 38 1 7.5859 -10.5686 1.6205 39 1 7.7821 -9.7491 3.1982 40 1 5.7784 -12.2634 3.0435 41 1 3.3756 -12.3931 3.5538 42 1 1.9842 -10.3627 3.4501 43 1 2.9988 -8.2080 2.8349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:41 Heat of formation + Delta-G solvation = 140.552281 kcal Electronic energy + Delta-G solvation = -27570.159360 eV Core-core repulsion = 23809.402101 eV Total energy + Delta-G solvation = -3760.757259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.144 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.49818 -40.43893 -38.46361 -36.81949 -34.94885 -33.98365 -32.18165 -31.27445 -31.12637 -29.63114 -29.04633 -27.06217 -26.29358 -23.98249 -23.36631 -22.93026 -22.47837 -21.19454 -20.90672 -20.22988 -18.18705 -17.54415 -17.00198 -16.80167 -16.25015 -15.87464 -15.35435 -15.24404 -15.13580 -14.49760 -14.05934 -13.98344 -13.82906 -13.72604 -13.51243 -13.34271 -13.02595 -12.91629 -12.28031 -12.16980 -11.99886 -11.83008 -11.72070 -11.33107 -11.22526 -11.15415 -10.99272 -10.90175 -10.72430 -10.16480 -10.15530 -9.51406 -9.16081 -8.97955 -8.83132 -8.67123 -8.54752 -8.22403 -7.68313 -6.56337 -4.30655 1.12714 1.22769 1.25472 1.87110 2.84788 2.96787 3.06479 3.38573 3.40314 3.59308 3.61177 4.05454 4.22440 4.37505 4.42988 4.47484 4.66653 4.68419 4.78090 4.81158 4.88903 4.92571 4.97004 5.11005 5.19354 5.29861 5.34009 5.41948 5.48018 5.49198 5.57121 5.64778 5.74980 5.82117 5.94995 6.23717 6.27816 6.36842 6.46063 6.55655 6.67450 6.80640 6.88400 6.91770 7.17923 7.41459 7.69807 7.80066 8.11984 8.27005 8.59430 8.74928 9.37198 10.81305 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.002595 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.597133 B =10788.992587 C =11091.341447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 1.076 2.924 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.612 4.612 8 H 0.055 0.945 9 C 0.255 3.745 10 N -0.331 5.331 11 N -0.243 5.243 12 C 0.071 3.929 13 C -0.337 4.337 14 C 0.365 3.635 15 N -0.556 5.556 16 C 0.368 3.632 17 N -0.615 5.615 18 C 0.511 3.489 19 N -0.698 5.698 20 C 0.194 3.806 21 H 0.110 0.890 22 C -0.127 4.127 23 C -0.078 4.078 24 C -0.098 4.098 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.125 4.125 28 C -0.080 4.080 29 C -0.103 4.103 30 H 0.268 0.732 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.183 0.817 34 H 0.195 0.805 35 H 0.409 0.591 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.505 -23.383 5.554 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.903 3.097 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.650 4.650 8 H 0.074 0.926 9 C 0.138 3.862 10 N -0.117 5.117 11 N -0.059 5.059 12 C -0.124 4.124 13 C -0.355 4.355 14 C 0.117 3.883 15 N -0.281 5.281 16 C 0.074 3.926 17 N -0.345 5.345 18 C 0.259 3.741 19 N -0.330 5.330 20 C 0.089 3.911 21 H 0.127 0.873 22 C -0.165 4.165 23 C -0.116 4.116 24 C -0.098 4.098 25 C -0.131 4.131 26 C -0.136 4.136 27 C -0.143 4.143 28 C -0.099 4.099 29 C -0.104 4.104 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.200 0.800 34 H 0.211 0.789 35 H 0.246 0.754 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.489 -20.774 5.523 24.860 hybrid contribution 0.559 -2.281 -0.496 2.400 sum 13.049 -23.054 5.027 26.964 Atomic orbital electron populations 1.70828 1.06726 1.30522 1.45563 1.25886 0.96317 1.02605 0.93023 0.83440 0.74867 0.74644 0.76776 1.20362 1.21234 1.21165 1.22098 0.94884 0.90745 1.57320 0.92621 1.19795 0.86403 0.81386 0.98663 1.49146 1.36059 1.27489 0.98992 1.76943 1.11679 1.08138 1.09137 1.23383 0.98875 0.97791 0.92401 1.19598 1.12544 1.08006 0.95319 1.18912 0.91134 0.89779 0.88483 1.67512 1.29803 1.30808 0.99952 1.24430 0.85123 0.83905 0.99169 1.67974 1.26579 1.25588 1.14408 1.17918 0.84089 0.83923 0.88209 1.44430 1.46111 1.33672 1.08798 1.20474 0.89173 0.89185 0.92242 0.87264 1.22621 0.97102 0.96030 1.00703 1.20994 0.93161 0.96679 1.00743 1.20556 0.95876 0.93405 0.99984 1.20555 0.94952 0.96597 1.01013 1.21031 0.93779 0.98408 1.00364 1.21092 0.99917 0.92661 1.00613 1.20648 0.94059 0.97752 0.97393 1.20878 0.94075 0.95366 1.00088 0.92175 0.93359 0.93882 0.79990 0.78850 0.75357 0.90236 0.89532 0.90427 0.89797 0.86431 0.86081 0.86082 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.65 55.43 0.76 -26.20 16 2 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 3 Si 1.08 25.46 29.90 -169.99 -5.08 20.38 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.61 -17.77 9.39 -34.44 -0.32 -18.10 16 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.26 6.83 5.51 -5.19 -0.03 6.80 16 10 N -0.33 -7.99 3.63 -61.64 -0.22 -8.22 16 11 N -0.24 -5.26 12.45 30.80 0.38 -4.87 16 12 C 0.07 1.20 11.87 -17.11 -0.20 1.00 16 13 C -0.34 -6.08 6.14 -106.82 -0.66 -6.73 16 14 C 0.36 8.07 8.04 -156.23 -1.26 6.81 16 15 N -0.56 -11.71 10.47 -13.97 -0.15 -11.86 16 16 C 0.37 6.11 12.24 -92.11 -1.13 4.98 16 17 N -0.62 -9.49 8.96 -13.62 -0.12 -9.61 16 18 C 0.51 7.69 7.21 -154.85 -1.12 6.57 16 19 N -0.70 -7.64 5.22 -53.71 -0.28 -7.92 16 20 C 0.19 1.87 3.22 -68.05 -0.22 1.65 16 21 H 0.11 1.20 7.59 -51.93 -0.39 0.80 16 22 C -0.13 -0.83 6.76 -25.32 -0.17 -1.00 16 23 C -0.08 -0.50 6.77 -26.84 -0.18 -0.68 16 24 C -0.10 -0.88 6.14 -104.14 -0.64 -1.52 16 25 C -0.11 -0.97 10.04 -39.54 -0.40 -1.37 16 26 C -0.12 -1.05 10.05 -39.63 -0.40 -1.44 16 27 C -0.12 -1.28 10.05 -39.63 -0.40 -1.68 16 28 C -0.08 -0.94 9.99 -39.59 -0.40 -1.34 16 29 C -0.10 -1.09 5.80 -104.20 -0.60 -1.69 16 30 H 0.27 7.91 7.22 -40.82 -0.29 7.62 16 31 H 0.05 1.33 8.01 -51.93 -0.42 0.92 16 32 H 0.04 1.17 8.01 -51.93 -0.42 0.76 16 33 H 0.18 2.10 8.06 -52.48 -0.42 1.68 16 34 H 0.20 2.46 8.06 -52.48 -0.42 2.03 16 35 H 0.41 3.62 8.27 -40.82 -0.34 3.28 16 36 H 0.08 0.45 7.81 -51.93 -0.41 0.05 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.61 7.31 -52.48 -0.38 1.22 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -34.45 367.01 -12.63 -47.09 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.24 Total: 2.75 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -8.21 Total: -7.07 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: 0.37 Total: -68.68 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.45 -12.63 -47.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.640 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds