Wall clock time and date at job start Tue Mar 31 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46982 * 2 1 4 4 C 1.36941 * 120.00510 * 275.25116 * 3 2 1 5 5 H 1.07997 * 120.00389 * 146.57915 * 4 3 2 6 6 C 1.38813 * 119.99683 * 326.57992 * 4 3 2 7 7 N 1.31622 * 120.00073 * 336.12533 * 6 4 3 8 8 Si 1.86796 * 120.00231 * 156.12371 * 6 4 3 9 9 H 1.48507 * 109.46748 * 90.00050 * 8 6 4 10 10 H 1.48495 * 109.47558 * 209.99930 * 8 6 4 11 11 H 1.48500 * 109.47176 * 330.00540 * 8 6 4 12 12 S 1.65599 * 119.99825 * 95.25052 * 3 2 1 13 13 O 1.42104 * 104.27951 * 153.92770 * 12 3 2 14 14 O 1.42097 * 104.27810 * 26.07207 * 12 3 2 15 15 C 1.81397 * 104.44924 * 269.99873 * 12 3 2 16 16 C 1.50705 * 109.47351 * 180.02562 * 15 12 3 17 17 C 1.38265 * 119.97808 * 269.98219 * 16 15 12 18 18 C 1.38211 * 120.03776 * 179.97438 * 17 16 15 19 19 C 1.38348 * 119.99845 * 0.04234 * 18 17 16 20 20 Cl 1.73595 * 120.02010 * 180.25607 * 19 18 17 21 21 C 1.38448 * 119.96097 * 359.97438 * 19 18 17 22 22 Cl 1.73604 * 120.01763 * 180.02562 * 21 19 18 23 23 C 1.38205 * 119.98146 * 89.99936 * 16 15 12 24 24 H 1.08996 * 109.47476 * 59.99540 * 1 2 3 25 25 H 1.09004 * 109.47180 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47005 * 299.99530 * 1 2 3 27 27 H 1.09008 * 109.47021 * 240.00805 * 2 1 3 28 28 H 1.08996 * 109.47476 * 120.00460 * 2 1 3 29 29 H 0.97003 * 120.00111 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47330 * 60.00329 * 15 12 3 31 31 H 1.09006 * 109.47416 * 299.99946 * 15 12 3 32 32 H 1.07998 * 119.98427 * 0.02562 * 17 16 15 33 33 H 1.07995 * 119.99780 * 180.02562 * 18 17 16 34 34 H 1.07997 * 119.99690 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1442 2.0630 -1.1809 5 1 1.9692 3.1283 -1.2107 6 6 2.4968 1.3848 -2.3397 7 7 3.1519 0.2459 -2.2621 8 14 2.0414 2.0886 -4.0090 9 1 3.1352 2.9710 -4.4892 10 1 1.8399 0.9794 -4.9756 11 1 0.7874 2.8750 -3.8894 12 16 2.4180 2.1181 1.4281 13 8 3.3746 3.1020 1.0592 14 8 2.7671 1.0443 2.2908 15 6 0.8780 2.9025 1.9792 16 6 1.1166 3.6149 3.2857 17 6 0.9318 2.9456 4.4813 18 6 1.1508 3.5975 5.6802 19 6 1.5543 4.9208 5.6843 20 17 1.8359 5.7383 7.1896 21 6 1.7390 5.5911 4.4870 22 17 2.2460 7.2514 4.4905 23 6 1.5197 4.9369 3.2879 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.3979 -0.2282 -3.0719 30 1 0.1106 2.1406 2.1154 31 1 0.5476 3.6211 1.2291 32 1 0.6170 1.9125 4.4785 33 1 1.0067 3.0740 6.6137 34 1 1.6632 5.4592 2.3536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067118547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:01 Heat of formation + Delta-G solvation = -54.433729 kcal Electronic energy + Delta-G solvation = -22570.533189 eV Core-core repulsion = 18875.644704 eV Total energy + Delta-G solvation = -3694.888485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.009 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.72598 -36.82253 -36.68374 -36.13563 -35.90770 -34.84338 -32.83382 -31.71762 -31.11419 -29.28788 -27.31976 -24.64674 -23.19926 -22.17337 -21.46358 -18.53746 -17.50118 -17.29400 -16.45400 -16.23875 -16.05627 -15.48913 -14.84036 -14.52397 -14.25474 -14.10488 -13.86082 -13.57073 -12.94474 -12.68225 -12.43352 -12.20179 -12.05873 -11.98675 -11.80596 -11.69230 -11.31977 -11.18514 -11.09521 -11.03149 -11.02803 -10.96751 -10.86836 -10.46988 -10.37947 -10.19973 -9.82759 -9.18937 -9.09684 -8.66935 -7.74511 -6.29084 -3.97281 0.57391 0.87578 1.28127 1.65084 2.01277 3.18006 3.23913 3.25598 3.27548 3.78933 4.24981 4.39420 4.45552 4.69281 4.78515 4.90865 4.99666 5.03668 5.15020 5.47658 5.59234 5.65055 5.78407 5.84882 6.00065 6.16047 6.18120 6.29138 6.37259 6.51822 6.85656 7.23211 7.37783 7.75834 8.37727 8.97245 9.34240 10.72527 Molecular weight = 337.01amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.003444 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.080027 B = 8128.805988 C = 8890.118518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.843 5.843 4 C -0.286 4.286 5 H 0.092 0.908 6 C 0.038 3.962 7 N -0.855 5.855 8 Si 0.914 3.086 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.270 1.270 12 S 2.552 3.448 13 O -0.957 6.957 14 O -0.985 6.985 15 C -0.599 4.599 16 C -0.057 4.057 17 C -0.095 4.095 18 C -0.095 4.095 19 C -0.034 4.034 20 Cl -0.052 7.052 21 C -0.027 4.027 22 Cl -0.048 7.048 23 C -0.090 4.090 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.033 0.967 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.267 0.733 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 6.056 11.919 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.675 5.675 4 C -0.422 4.422 5 H 0.109 0.891 6 C -0.169 4.169 7 N -0.494 5.494 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.194 1.194 12 S 2.650 3.350 13 O -0.947 6.947 14 O -0.975 6.975 15 C -0.720 4.720 16 C -0.059 4.059 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.062 4.062 20 Cl -0.023 7.023 21 C -0.054 4.054 22 Cl -0.019 7.019 23 C -0.110 4.110 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.133 0.867 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.816 6.183 12.495 15.518 hybrid contribution -0.817 0.673 -0.792 1.322 sum -7.633 6.856 11.703 15.564 Atomic orbital electron populations 1.22239 0.98869 1.00258 1.00997 1.21384 0.91355 0.84250 1.05013 1.52675 1.76956 1.20580 1.17292 1.19072 1.45016 0.94005 0.84082 0.89080 1.25319 0.95044 0.96860 0.99683 1.69980 1.33556 1.16681 1.29201 0.86159 0.79264 0.78664 0.81922 1.20254 1.20787 1.19428 1.07876 0.76111 0.75289 0.75741 1.93476 1.55520 1.63995 1.81706 1.93433 1.81354 1.52613 1.70101 1.30009 1.27076 1.12686 1.02269 1.19244 0.99250 0.93447 0.93951 1.21287 0.98452 1.00890 0.90736 1.21031 0.99069 0.91734 0.99571 1.20792 1.05080 0.93897 0.86427 1.98379 1.94596 1.78842 1.30521 1.20687 1.03866 0.87628 0.93247 1.98387 1.89189 1.15422 1.98862 1.21108 0.98453 0.94026 0.97377 0.92061 0.93200 0.94755 0.86656 0.92096 0.92230 0.84327 0.83970 0.83520 0.83494 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.21 37.16 0.38 -2.42 16 2 C 0.11 2.29 5.99 -4.04 -0.02 2.27 16 3 N -0.84 -19.49 2.78 -59.91 -0.17 -19.66 16 4 C -0.29 -7.09 8.78 -15.06 -0.13 -7.22 16 5 H 0.09 2.16 7.94 -52.49 -0.42 1.74 16 6 C 0.04 0.96 4.98 -17.43 -0.09 0.87 16 7 N -0.85 -22.45 11.28 55.49 0.63 -21.82 16 8 Si 0.91 19.27 29.62 -169.99 -5.03 14.24 16 9 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 12 S 2.55 54.71 5.37 -107.50 -0.58 54.13 16 13 O -0.96 -23.82 17.22 -57.54 -0.99 -24.81 16 14 O -0.99 -22.80 16.53 -57.54 -0.95 -23.75 16 15 C -0.60 -9.18 6.30 36.01 0.23 -8.95 16 16 C -0.06 -0.84 5.14 -104.62 -0.54 -1.37 16 17 C -0.09 -1.22 9.70 -39.58 -0.38 -1.60 16 18 C -0.10 -1.10 9.83 -39.55 -0.39 -1.49 16 19 C -0.03 -0.43 6.32 -39.46 -0.25 -0.68 16 20 Cl -0.05 -0.59 27.96 -51.86 -1.45 -2.04 16 21 C -0.03 -0.36 6.32 -39.46 -0.25 -0.61 16 22 Cl -0.05 -0.60 27.96 -51.86 -1.45 -2.05 16 23 C -0.09 -1.30 9.48 -39.55 -0.38 -1.68 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.03 0.50 6.98 -51.93 -0.36 0.14 16 27 H 0.12 2.75 5.31 -51.92 -0.28 2.47 16 28 H 0.06 1.29 6.81 -51.93 -0.35 0.93 16 29 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.14 1.79 6.92 -51.92 -0.36 1.43 16 31 H 0.14 1.96 8.08 -51.92 -0.42 1.54 16 32 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -30.35 333.90 -10.22 -40.57 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.44 Total: 3.04 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -1.82 Total: -22.88 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.46 Total: -41.48 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -1.94 Total: -48.57 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Atomic # 16 Polarization: 54.71 SS G_CDS: -0.58 Total: 54.13 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -2.90 Total: -4.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.35 -10.22 -40.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067118547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.859 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds