Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46836 * 2 1 4 4 C 1.37105 * 119.99735 * 264.75139 * 3 2 1 5 5 H 1.07997 * 119.99926 * 146.16249 * 4 3 2 6 6 C 1.38946 * 119.99648 * 326.16123 * 4 3 2 7 7 N 1.31415 * 120.00204 * 337.68919 * 6 4 3 8 8 Si 1.86799 * 120.00036 * 157.69085 * 6 4 3 9 9 H 1.48499 * 109.47155 * 89.99559 * 8 6 4 10 10 H 1.48499 * 109.47375 * 210.00082 * 8 6 4 11 11 H 1.48506 * 109.47033 * 330.00178 * 8 6 4 12 12 C 1.34775 * 120.00543 * 84.74862 * 3 2 1 13 13 O 1.21290 * 120.00575 * 180.02562 * 12 3 2 14 14 C 1.50707 * 119.99650 * 359.97438 * 12 3 2 15 15 C 1.52998 * 109.46826 * 180.02562 * 14 12 3 16 16 C 1.50704 * 109.46759 * 180.02562 * 15 14 12 17 17 C 1.38229 * 119.90683 * 269.72620 * 16 15 14 18 18 C 1.38674 * 120.08411 * 179.72975 * 17 16 15 19 19 O 1.35999 * 120.04101 * 180.29226 * 18 17 16 20 20 C 1.42905 * 117.00097 * 0.27566 * 19 18 17 21 21 C 1.38971 * 119.91208 * 0.56464 * 18 17 16 22 22 O 1.36088 * 120.09132 * 179.68694 * 21 18 17 23 23 C 1.42902 * 117.00251 * 270.02312 * 22 21 18 24 24 C 1.38986 * 119.82391 * 359.70653 * 21 18 17 25 25 O 1.35990 * 120.04865 * 179.97438 * 24 21 18 26 26 C 1.42896 * 117.00278 * 180.02562 * 25 24 21 27 27 C 1.38228 * 119.91354 * 89.99730 * 16 15 14 28 28 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46618 * 299.99938 * 1 2 3 30 30 H 1.08990 * 109.47319 * 59.99872 * 1 2 3 31 31 H 1.09000 * 109.46969 * 240.00273 * 2 1 3 32 32 H 1.09001 * 109.47324 * 119.99670 * 2 1 3 33 33 H 0.97002 * 120.00091 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46454 * 60.00170 * 14 12 3 35 35 H 1.08996 * 109.47042 * 300.00003 * 14 12 3 36 36 H 1.09003 * 109.46864 * 299.99559 * 15 14 12 37 37 H 1.08992 * 109.47632 * 60.00337 * 15 14 12 38 38 H 1.08000 * 119.95966 * 359.97438 * 17 16 15 39 39 H 1.09003 * 109.46792 * 299.99308 * 20 19 18 40 40 H 1.08997 * 109.47422 * 59.99879 * 20 19 18 41 41 H 1.08997 * 109.46579 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.46954 * 300.00012 * 23 22 21 43 43 H 1.09003 * 109.47058 * 59.99271 * 23 22 21 44 44 H 1.08999 * 109.47483 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.46863 * 300.00122 * 26 25 24 46 46 H 1.08997 * 109.47418 * 59.99680 * 26 25 24 47 47 H 1.08997 * 109.47524 * 180.02562 * 26 25 24 48 48 H 1.08006 * 119.95296 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3492 1.9913 -1.1824 5 1 2.1813 3.0507 -1.3090 6 6 2.9006 1.2467 -2.2178 7 7 3.5051 0.1088 -1.9594 8 14 2.7826 1.8629 -3.9773 9 1 3.9648 2.7067 -4.2866 10 1 2.7443 0.7048 -4.9060 11 1 1.5447 2.6674 -4.1380 12 6 2.1423 2.0523 1.1622 13 8 2.5461 3.1960 1.1622 14 6 1.7780 1.3819 2.4619 15 6 2.0085 2.3550 3.6198 16 6 1.6448 1.6844 4.9194 17 6 0.3548 1.7798 5.4068 18 6 0.0147 1.1595 6.5995 19 8 -1.2562 1.2489 7.0752 20 6 -2.1915 1.9928 6.2916 21 6 0.9757 0.4511 7.3109 22 8 0.6475 -0.1537 8.4850 23 6 0.8029 0.6177 9.6778 24 6 2.2730 0.3623 6.8203 25 8 3.2172 -0.3292 7.5129 26 6 4.5294 -0.3781 6.9493 27 6 2.6035 0.9804 5.6237 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.8904 -0.4108 -2.6822 34 1 2.3994 0.4973 2.6009 35 1 0.7285 1.0887 2.4377 36 1 3.0580 2.6487 3.6441 37 1 1.3869 3.2394 3.4805 38 1 -0.3902 2.3348 4.8560 39 1 -1.8437 3.0209 6.1901 40 1 -2.2795 1.5399 5.3041 41 1 -3.1642 1.9855 6.7832 42 1 1.8457 0.9166 9.7839 43 1 0.1743 1.5063 9.6203 44 1 0.5069 0.0187 10.5390 45 1 4.4853 -0.8469 5.9662 46 1 4.9208 0.6344 6.8516 47 1 5.1828 -0.9595 7.5997 48 1 3.6115 0.9123 5.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241596.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -118.796402 kcal Electronic energy + Delta-G solvation = -29824.892341 eV Core-core repulsion = 25653.682979 eV Total energy + Delta-G solvation = -4171.209362 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.87917 -39.08952 -38.69361 -37.79515 -36.88219 -35.03260 -32.91476 -31.94404 -29.71255 -29.57915 -29.39732 -27.95064 -27.22003 -26.72043 -25.15146 -23.55906 -22.21015 -22.06141 -21.22041 -18.72929 -18.41866 -17.32335 -17.28725 -16.78416 -16.61633 -16.31102 -15.90069 -15.62772 -15.09258 -15.06071 -14.81522 -14.64077 -14.46103 -14.22051 -14.08288 -13.35985 -13.07891 -12.90265 -12.69717 -12.61949 -12.29588 -12.11335 -12.01201 -11.81426 -11.69932 -11.64046 -11.59885 -11.46181 -11.07485 -10.99096 -10.83648 -10.68148 -10.45643 -10.35662 -10.25721 -10.05342 -10.00109 -8.95027 -8.44875 -8.23465 -8.15786 -7.49456 -6.34160 -3.94652 1.12486 1.31308 2.71619 3.15638 3.24683 3.30048 3.37540 3.52481 3.87335 3.91390 4.15032 4.61713 4.83172 4.91243 4.96919 5.00782 5.02749 5.06575 5.07600 5.09147 5.12418 5.29484 5.31737 5.35936 5.39473 5.40086 5.57014 5.58825 5.62487 5.74052 5.85589 6.06890 6.10090 6.11473 6.16866 6.26724 6.30898 6.39441 6.52843 6.56169 6.67808 6.88859 6.95439 7.15191 7.27001 7.58686 7.64512 8.23993 8.50696 9.18614 9.42386 10.01956 10.69528 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.002690 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.630524 B =10408.020943 C =11225.367110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 N -0.440 5.440 4 C -0.307 4.307 5 H 0.091 0.909 6 C 0.034 3.966 7 N -0.870 5.870 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.456 3.544 13 O -0.586 6.586 14 C -0.126 4.126 15 C -0.065 4.065 16 C 0.006 3.994 17 C -0.230 4.230 18 C 0.150 3.850 19 O -0.306 6.306 20 C 0.024 3.976 21 C 0.015 3.985 22 O -0.313 6.313 23 C 0.035 3.965 24 C 0.151 3.849 25 O -0.306 6.306 26 C 0.024 3.976 27 C -0.230 4.230 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.048 0.952 33 H 0.267 0.733 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.100 0.900 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 -1.768 18.140 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.159 5.159 4 C -0.435 4.435 5 H 0.109 0.891 6 C -0.169 4.169 7 N -0.508 5.508 8 Si 0.742 3.258 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.244 3.756 13 O -0.470 6.470 14 C -0.167 4.167 15 C -0.103 4.103 16 C 0.006 3.994 17 C -0.249 4.249 18 C 0.104 3.896 19 O -0.218 6.218 20 C -0.071 4.071 21 C -0.030 4.030 22 O -0.229 6.229 23 C -0.059 4.059 24 C 0.104 3.896 25 O -0.218 6.218 26 C -0.071 4.071 27 C -0.249 4.249 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.119 0.881 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.678 -1.733 18.396 19.330 hybrid contribution 0.175 0.450 -1.288 1.375 sum -5.503 -1.283 17.108 18.017 Atomic orbital electron populations 1.22205 0.98280 1.00337 1.01410 1.21594 0.91693 0.85523 1.04117 1.43544 1.55580 1.11842 1.04963 1.19440 1.39697 0.95421 0.88920 0.89096 1.25320 0.94595 0.96501 1.00495 1.69922 1.32675 1.15320 1.32889 0.86109 0.79040 0.78358 0.82256 1.20312 1.20810 1.19443 1.20270 0.82511 0.87936 0.84855 1.90509 1.50776 1.18830 1.86930 1.21585 1.02533 0.99075 0.93460 1.20391 1.03464 0.97679 0.88756 1.19702 0.91785 0.92906 0.95038 1.21007 0.98263 1.08038 0.97629 1.18928 0.84326 0.93629 0.92748 1.86120 1.16875 1.70155 1.48699 1.23130 0.91840 0.95548 0.96544 1.16884 0.89077 1.06226 0.90831 1.86163 1.86302 1.38732 1.11697 1.22947 1.00219 0.96285 0.86477 1.18939 0.87623 0.91746 0.91256 1.86114 1.19314 1.68520 1.47892 1.23141 0.81376 1.02353 1.00243 1.21033 1.01565 1.05831 0.96428 0.93111 0.93953 0.92481 0.86927 0.93406 0.92256 0.90132 0.90353 0.90015 0.90123 0.84678 0.92436 0.92186 0.88175 0.93913 0.93939 0.89303 0.92098 0.92397 0.88140 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.15 37.16 0.38 -2.56 16 2 C 0.09 2.04 5.44 -4.04 -0.02 2.02 16 3 N -0.44 -11.01 2.56 -114.80 -0.29 -11.30 16 4 C -0.31 -8.44 8.98 -14.93 -0.13 -8.58 16 5 H 0.09 2.62 7.70 -52.49 -0.40 2.22 16 6 C 0.03 0.91 4.92 -17.47 -0.09 0.82 16 7 N -0.87 -23.18 11.33 55.50 0.63 -22.55 16 8 Si 0.92 20.40 29.61 -169.99 -5.03 15.37 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 12 C 0.46 10.86 7.59 -10.98 -0.08 10.78 16 13 O -0.59 -15.93 15.81 5.55 0.09 -15.84 16 14 C -0.13 -2.27 4.29 -27.88 -0.12 -2.39 16 15 C -0.07 -1.04 4.63 -27.88 -0.13 -1.17 16 16 C 0.01 0.09 5.13 -104.63 -0.54 -0.45 16 17 C -0.23 -3.06 8.69 -39.42 -0.34 -3.40 16 18 C 0.15 2.08 6.70 -39.15 -0.26 1.82 16 19 O -0.31 -3.88 10.28 -34.32 -0.35 -4.23 16 20 C 0.02 0.21 9.81 101.05 0.99 1.20 16 21 C 0.01 0.22 5.75 -39.03 -0.22 0.00 16 22 O -0.31 -4.58 9.98 -45.28 -0.45 -5.03 16 23 C 0.04 0.38 11.13 101.05 1.13 1.51 16 24 C 0.15 2.12 6.70 -39.15 -0.26 1.86 16 25 O -0.31 -3.97 10.28 -34.29 -0.35 -4.32 16 26 C 0.02 0.22 9.81 101.05 0.99 1.21 16 27 C -0.23 -3.12 8.69 -39.43 -0.34 -3.46 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.70 6.59 -51.93 -0.34 0.36 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.11 2.69 5.34 -51.93 -0.28 2.41 16 32 H 0.05 0.94 6.66 -51.93 -0.35 0.60 16 33 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.08 1.39 7.41 -51.93 -0.38 1.01 16 35 H 0.08 1.29 6.53 -51.93 -0.34 0.95 16 36 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 37 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 38 H 0.14 1.57 6.29 -52.49 -0.33 1.24 16 39 H 0.06 0.44 7.65 -51.93 -0.40 0.05 16 40 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.54 7.66 -51.93 -0.40 0.15 16 46 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.14 1.66 6.29 -52.48 -0.33 1.33 16 LS Contribution 394.41 15.07 5.94 5.94 Total: -1.00 -33.18 394.41 -6.16 -39.34 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.27 Total: 3.42 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 0.94 Total: -0.80 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.34 Total: -33.85 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -1.07 Total: -29.42 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.18 -6.16 -39.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241596.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.459 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds