Wall clock time and date at job start Tue Mar 31 2020 05:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.38564 * 120.07625 * 359.72270 * 3 2 1 5 5 C 1.38245 * 119.99792 * 179.79495 * 4 3 2 6 6 C 1.38247 * 120.14929 * 0.45790 * 5 4 3 7 7 C 1.50701 * 119.93158 * 179.77035 * 6 5 4 8 8 C 1.53003 * 109.47173 * 270.02640 * 7 6 5 9 9 C 1.50692 * 109.47175 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00262 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00273 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00597 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47033 * 89.99459 * 12 11 9 14 14 H 1.07993 * 120.00143 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99679 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00429 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99999 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47148 * 89.99569 * 17 15 13 19 19 H 1.48496 * 109.47349 * 210.00118 * 17 15 13 20 20 H 1.48499 * 109.46851 * 330.00239 * 17 15 13 21 21 C 1.46504 * 119.99888 * 359.97438 * 11 9 8 22 22 C 1.53003 * 109.47107 * 120.00179 * 21 11 9 23 23 C 1.52994 * 109.47404 * 240.00138 * 21 11 9 24 24 C 1.38241 * 120.14550 * 359.79719 * 6 5 4 25 25 C 1.38563 * 119.99940 * 359.97369 * 24 6 5 26 26 O 1.35997 * 120.07546 * 180.02562 * 25 24 6 27 27 C 1.42902 * 116.99582 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 300.00182 * 1 2 3 30 30 H 1.08998 * 109.47043 * 59.99780 * 1 2 3 31 31 H 1.07997 * 120.00260 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.92433 * 180.21315 * 5 4 3 33 33 H 1.09000 * 109.46763 * 30.02282 * 7 6 5 34 34 H 1.08993 * 109.47638 * 150.02455 * 7 6 5 35 35 H 1.08995 * 109.46896 * 300.00239 * 8 7 6 36 36 H 1.09001 * 109.46846 * 59.99702 * 8 7 6 37 37 H 1.08998 * 109.47136 * 209.99801 * 12 11 9 38 38 H 1.09003 * 109.46746 * 329.99847 * 12 11 9 39 39 H 0.97000 * 120.00519 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47053 * 0.02562 * 21 11 9 41 41 H 1.09000 * 109.46882 * 60.00240 * 22 21 11 42 42 H 1.08998 * 109.47393 * 180.02562 * 22 21 11 43 43 H 1.09005 * 109.47248 * 299.99960 * 22 21 11 44 44 H 1.08998 * 109.47031 * 60.00236 * 23 21 11 45 45 H 1.08998 * 109.47218 * 179.97438 * 23 21 11 46 46 H 1.09000 * 109.47330 * 300.00216 * 23 21 11 47 47 H 1.08004 * 120.00331 * 179.97438 * 24 6 5 48 48 H 1.09007 * 109.46665 * 179.97438 * 27 26 25 49 49 H 1.08998 * 109.47287 * 299.99772 * 27 26 25 50 50 H 1.09001 * 109.47198 * 60.00379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9224 3.6058 -0.0015 6 6 3.3028 3.6799 -0.0010 7 6 3.9836 5.0244 -0.0015 8 6 4.2140 5.4788 -1.4442 9 6 4.8942 6.8235 -1.4448 10 8 5.1674 7.3654 -0.3947 11 7 5.1981 7.4246 -2.6122 12 6 5.8599 8.7316 -2.6128 13 6 7.3544 8.5379 -2.6133 14 1 7.7697 7.5410 -2.6137 15 6 8.1915 9.6335 -2.6134 16 7 7.6857 10.8475 -2.6136 17 14 10.0440 9.3935 -2.6148 18 1 10.5339 9.3304 -4.0153 19 1 10.6911 10.5320 -1.9148 20 1 10.3795 8.1271 -1.9157 21 6 4.8677 6.7703 -3.8807 22 6 3.9194 7.6634 -4.6833 23 6 6.1492 6.5365 -4.6830 24 6 4.0602 2.5235 -0.0005 25 6 3.4359 1.2864 0.0000 26 8 4.1795 0.1478 0.0010 27 6 5.6003 0.3008 0.0009 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2146 2.3197 -0.0099 32 1 1.3341 4.5115 -0.0026 33 1 3.3537 5.7508 0.5120 34 1 4.9417 4.9468 0.5123 35 1 4.8438 4.7524 -1.9577 36 1 3.2559 5.5565 -1.9581 37 1 5.5652 9.2876 -3.5028 38 1 5.5660 9.2880 -1.7228 39 1 8.2746 11.6183 -2.6140 40 1 4.3839 5.8142 -3.6811 41 1 4.4028 8.6198 -4.8828 42 1 3.6732 7.1765 -5.6269 43 1 3.0063 7.8301 -4.1117 44 1 6.8247 5.9002 -4.1113 45 1 5.9034 6.0493 -5.6265 46 1 6.6326 7.4928 -4.8825 47 1 5.1386 2.5841 -0.0005 48 1 6.0716 -0.6821 0.0022 49 1 5.9066 0.8498 -0.8896 50 1 5.9065 0.8513 0.8904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069462567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:35 Heat of formation + Delta-G solvation = -94.642500 kcal Electronic energy + Delta-G solvation = -29220.273341 eV Core-core repulsion = 25213.255943 eV Total energy + Delta-G solvation = -4007.017397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73632 -39.25215 -38.60202 -37.42681 -35.95411 -33.36475 -32.71208 -30.80414 -30.48433 -29.76603 -27.84644 -27.43875 -26.90457 -26.65336 -24.34530 -22.53695 -22.31902 -21.33507 -20.86214 -18.57919 -17.90094 -17.27085 -16.92486 -16.51167 -16.43928 -16.23826 -15.42761 -15.14618 -14.96204 -14.91920 -14.62500 -14.36153 -14.14889 -13.63147 -13.48725 -13.17809 -13.02483 -12.89965 -12.41639 -12.34239 -12.17528 -12.09270 -11.95017 -11.65194 -11.56544 -11.37783 -11.35688 -11.18389 -11.12188 -10.93589 -10.89962 -10.80182 -10.75412 -10.52197 -10.34719 -9.99430 -9.52527 -8.91689 -8.76956 -8.40629 -7.88095 -7.61511 -6.01875 -4.04987 1.13795 1.29408 3.07483 3.11349 3.29912 3.36973 3.39871 3.48640 3.54151 3.97478 4.45788 4.59119 4.66580 4.77524 4.89942 4.92117 4.97698 5.02460 5.13484 5.19482 5.22795 5.24455 5.28749 5.32400 5.33941 5.35824 5.41742 5.53493 5.59790 5.69190 5.78252 5.98530 6.02666 6.04453 6.14310 6.17815 6.28543 6.31240 6.37628 6.54416 6.60293 6.61217 6.86560 6.96794 7.14619 7.41049 7.49871 7.60747 7.95244 8.27878 8.49134 8.94059 9.14638 9.59075 11.06246 Molecular weight = 335.19amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002548 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.923571 B =10984.493088 C =11603.717584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.088 3.912 4 C -0.170 4.170 5 C -0.114 4.114 6 C -0.069 4.069 7 C -0.063 4.063 8 C -0.134 4.134 9 C 0.503 3.497 10 O -0.544 6.544 11 N -0.594 5.594 12 C 0.245 3.755 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.133 3.867 22 C -0.162 4.162 23 C -0.157 4.157 24 C -0.168 4.168 25 C 0.100 3.900 26 O -0.309 6.309 27 C 0.025 3.975 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.262 0.738 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.080 0.920 47 H 0.136 0.864 48 H 0.099 0.901 49 H 0.056 0.944 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.416 -20.124 0.946 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.043 3.957 4 C -0.188 4.188 5 C -0.132 4.132 6 C -0.070 4.070 7 C -0.100 4.100 8 C -0.174 4.174 9 C 0.290 3.710 10 O -0.422 6.422 11 N -0.326 5.326 12 C 0.126 3.874 13 C -0.556 4.556 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.028 3.972 22 C -0.220 4.220 23 C -0.215 4.215 24 C -0.187 4.187 25 C 0.055 3.945 26 O -0.223 6.223 27 C -0.070 4.070 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.099 0.901 47 H 0.154 0.846 48 H 0.117 0.883 49 H 0.075 0.925 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.184 -20.012 1.489 24.011 hybrid contribution 1.077 0.257 -0.162 1.119 sum -12.107 -19.755 1.327 23.208 Atomic orbital electron populations 1.23035 0.78819 1.03765 1.01180 1.86155 1.20799 1.26086 1.89305 1.18218 0.89107 0.85140 1.03234 1.21033 0.99781 0.91479 1.06551 1.20804 0.93937 0.97084 1.01364 1.19729 0.93327 0.94902 0.98993 1.20317 1.01434 0.92043 0.96257 1.21678 1.01637 0.96123 0.97959 1.20343 0.79691 0.86759 0.84192 1.90667 1.54530 1.66011 1.30971 1.48343 1.58049 1.22233 1.03944 1.19226 0.91732 0.78190 0.98233 1.21431 0.91085 0.92733 1.50331 0.92451 1.24929 0.98828 0.95104 0.95375 1.69930 1.35133 0.97663 1.50785 0.86557 0.85489 0.77807 0.77925 1.20727 1.21184 1.19976 1.20991 0.95629 0.95363 0.85195 1.22158 0.99179 1.01327 0.99321 1.22138 0.97397 1.03698 0.98261 1.21030 1.00543 0.90498 1.06592 1.18230 0.88199 0.86060 1.02020 1.86147 1.18713 1.28322 1.89107 1.23083 0.78560 1.03777 1.01576 0.88403 0.92815 0.92768 0.84900 0.85400 0.90035 0.90165 0.89611 0.89614 0.94877 0.94124 0.92830 0.90692 0.91328 0.92336 0.92951 0.92812 0.93329 0.90078 0.84606 0.88295 0.92498 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.59 10.28 -34.23 -0.35 -3.94 16 3 C 0.09 1.07 6.70 -39.12 -0.26 0.80 16 4 C -0.17 -1.75 9.04 -39.46 -0.36 -2.11 16 5 C -0.11 -1.24 9.69 -39.58 -0.38 -1.62 16 6 C -0.07 -0.83 5.13 -104.62 -0.54 -1.37 16 7 C -0.06 -0.86 4.63 -27.88 -0.13 -0.99 16 8 C -0.13 -1.94 3.99 -27.89 -0.11 -2.05 16 9 C 0.50 10.20 7.67 -10.99 -0.08 10.12 16 10 O -0.54 -13.41 15.56 5.55 0.09 -13.32 16 11 N -0.59 -12.27 2.39 -167.47 -0.40 -12.67 16 12 C 0.25 6.28 4.60 -5.19 -0.02 6.26 16 13 C -0.52 -14.26 7.83 -34.44 -0.27 -14.53 16 14 H 0.06 1.59 7.62 -52.49 -0.40 1.18 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 17 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.13 2.14 3.17 -67.93 -0.22 1.93 16 22 C -0.16 -2.36 9.17 37.16 0.34 -2.02 16 23 C -0.16 -2.57 8.47 37.15 0.31 -2.26 16 24 C -0.17 -2.00 8.69 -39.46 -0.34 -2.34 16 25 C 0.10 1.27 6.70 -39.12 -0.26 1.00 16 26 O -0.31 -3.82 10.28 -34.24 -0.35 -4.17 16 27 C 0.03 0.22 9.81 101.05 0.99 1.21 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 30 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 31 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 34 H 0.08 1.18 8.04 -51.93 -0.42 0.77 16 35 H 0.09 1.14 7.79 -51.93 -0.40 0.74 16 36 H 0.09 1.07 7.79 -51.93 -0.40 0.67 16 37 H 0.03 0.86 6.43 -51.93 -0.33 0.53 16 38 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.08 1.01 5.77 -51.93 -0.30 0.71 16 41 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 47 H 0.14 1.45 6.30 -52.48 -0.33 1.12 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 50 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -34.28 404.16 -7.76 -42.04 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.12 Total: 0.16 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.44 Total: -5.21 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.34 Total: -38.35 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.62 Total: -21.44 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.28 -7.76 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069462567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.605 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds