Wall clock time and date at job start Tue Mar 31 2020 05:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47368 * 2 1 4 4 H 1.09001 * 109.47493 * 304.99709 * 3 2 1 5 5 C 1.53003 * 109.47356 * 64.99901 * 3 2 1 6 6 C 1.53004 * 109.47056 * 184.99822 * 3 2 1 7 7 H 1.08999 * 109.47074 * 58.40375 * 6 3 2 8 8 C 1.52995 * 109.47162 * 298.40042 * 6 3 2 9 9 N 1.46902 * 109.46894 * 178.39877 * 6 3 2 10 10 C 1.46897 * 111.00331 * 292.45918 * 9 6 3 11 11 C 1.50700 * 109.47019 * 163.99824 * 10 9 6 12 12 O 1.21285 * 120.00453 * 1.15648 * 11 10 9 13 13 N 1.34785 * 119.99877 * 181.15666 * 11 10 9 14 14 C 1.46500 * 119.99961 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47076 * 89.99773 * 14 13 11 16 16 H 1.08000 * 120.00023 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00010 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00235 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99816 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47299 * 90.00043 * 19 17 15 21 21 H 1.48503 * 109.47058 * 209.99940 * 19 17 15 22 22 H 1.48498 * 109.47454 * 329.99997 * 19 17 15 23 23 C 1.46494 * 119.99974 * 0.02562 * 13 11 10 24 24 C 1.52996 * 109.47201 * 90.00004 * 23 13 11 25 25 C 1.47203 * 109.47223 * 180.02562 * 24 23 13 26 26 N 7.08674 * 81.01453 * 306.72054 * 2 1 3 27 27 C 1.46904 * 110.99603 * 168.50631 * 9 6 3 28 28 C 1.53001 * 117.49410 * 130.16153 * 27 9 6 29 29 C 1.53001 * 117.49686 * 61.50652 * 27 9 6 30 30 H 1.09000 * 109.46682 * 300.00714 * 1 2 3 31 31 H 1.09003 * 109.46548 * 60.00096 * 1 2 3 32 32 H 1.08996 * 109.47323 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47269 * 239.99583 * 2 1 3 34 34 H 1.09003 * 109.46548 * 119.99904 * 2 1 3 35 35 H 1.09004 * 109.46927 * 293.75615 * 5 3 2 36 36 H 1.09001 * 109.47101 * 53.75711 * 5 3 2 37 37 H 1.09001 * 109.47459 * 173.75791 * 5 3 2 38 38 H 1.08998 * 109.47358 * 295.47583 * 8 6 3 39 39 H 1.08998 * 109.47348 * 55.48255 * 8 6 3 40 40 H 1.08997 * 109.47279 * 175.47982 * 8 6 3 41 41 H 1.08991 * 109.47523 * 284.00051 * 10 9 6 42 42 H 1.09000 * 109.46627 * 44.00367 * 10 9 6 43 43 H 1.08997 * 109.47213 * 209.99795 * 14 13 11 44 44 H 1.08999 * 109.47099 * 329.99874 * 14 13 11 45 45 H 0.96999 * 119.99554 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.47143 * 210.00216 * 23 13 11 47 47 H 1.09006 * 109.47587 * 330.00048 * 23 13 11 48 48 H 1.09001 * 109.47245 * 300.00149 * 24 23 13 49 49 H 1.08997 * 109.47148 * 60.00291 * 24 23 13 50 50 H 1.08994 * 115.55143 * 275.82590 * 27 9 6 51 51 H 1.09001 * 117.50467 * 359.97438 * 28 27 9 52 52 H 1.09004 * 117.49955 * 145.02297 * 28 27 9 53 53 H 1.09005 * 117.49691 * 214.97791 * 29 27 9 54 54 H 1.09000 * 117.49834 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4441 -0.1257 7 1 3.8545 0.9318 -1.0431 8 6 4.1766 0.7221 1.0765 9 7 4.0514 2.8297 -0.1642 10 6 3.6293 3.5018 -1.4004 11 6 3.7922 4.9916 -1.2429 12 8 4.2377 5.4474 -0.2110 13 7 3.4427 5.8178 -2.2489 14 6 3.6015 7.2661 -2.0961 15 6 4.9714 7.6743 -2.5732 16 1 5.6555 6.9293 -2.9520 17 6 5.3515 8.9988 -2.5262 18 7 6.5469 9.3552 -2.9431 19 14 4.1686 10.2872 -1.8704 20 1 4.3623 10.4373 -0.4057 21 1 4.4308 11.5865 -2.5400 22 1 2.7723 9.8622 -2.1439 23 6 2.9039 5.2675 -3.4951 24 6 1.3809 5.1657 -3.3912 25 6 0.8396 4.6121 -4.6432 26 7 0.4232 4.1853 -5.6107 27 6 5.5116 2.8794 -0.0103 28 6 6.3010 3.7087 -1.0252 29 6 6.3584 2.1799 -1.0755 30 1 -0.3633 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5504 2.2246 1.3453 36 1 1.9758 1.5271 2.1517 37 1 2.0915 3.1153 1.3564 38 1 3.9543 1.2792 1.9866 39 1 3.7546 -0.2801 1.1517 40 1 5.2567 0.6527 0.9477 41 1 4.2440 3.1548 -2.2308 42 1 2.5833 3.2698 -1.6009 43 1 2.8431 7.7792 -2.6872 44 1 3.4874 7.5354 -1.0460 45 1 6.8140 10.2871 -2.9103 46 1 3.1686 5.9219 -4.3256 47 1 3.3235 4.2760 -3.6659 48 1 1.1163 4.5112 -2.5607 49 1 0.9613 6.1570 -3.2206 50 1 5.8770 2.8594 1.0163 51 1 5.7371 4.2171 -1.8073 52 1 7.1861 4.2339 -0.6663 53 1 7.2812 1.6999 -0.7495 54 1 5.8321 1.6825 -1.8902 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069484263.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:00 Heat of formation + Delta-G solvation = 8.619426 kcal Electronic energy + Delta-G solvation = -31225.454514 eV Core-core repulsion = 27391.040735 eV Total energy + Delta-G solvation = -3834.413779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.53810 -39.73198 -38.00160 -37.60443 -36.55790 -34.80906 -34.08310 -32.38481 -31.76910 -29.99938 -29.49405 -27.30547 -26.06230 -25.20751 -24.00847 -23.77220 -23.04611 -21.15691 -19.93537 -19.28188 -19.12799 -18.46943 -18.03090 -17.79483 -17.13142 -16.34325 -16.24470 -16.06888 -15.71534 -15.54415 -15.35923 -15.17288 -14.59505 -14.52510 -14.38315 -14.28224 -13.74859 -13.59008 -13.53505 -13.47331 -13.17987 -13.12085 -13.05060 -12.81598 -12.76798 -12.66582 -12.63272 -12.49552 -12.39008 -12.36062 -11.97973 -11.93519 -11.80140 -11.66312 -11.55657 -11.37754 -11.17708 -11.09819 -10.96214 -10.74953 -10.44142 -9.36878 -9.07032 -8.25710 -6.29223 1.38869 1.43162 1.50016 1.69434 1.84318 1.96804 2.21697 2.37765 2.83590 2.95559 3.10018 3.19020 3.75084 3.79874 3.93322 3.99455 4.01004 4.04891 4.08854 4.11247 4.23353 4.32416 4.33249 4.46912 4.55134 4.60594 4.68987 4.73163 4.80154 4.82085 4.86023 4.90822 4.91165 4.98208 5.03090 5.08782 5.11600 5.13877 5.15097 5.20828 5.28155 5.31681 5.34919 5.39146 5.50927 5.55846 5.64549 5.68625 5.73165 6.05652 6.24553 6.33913 6.61073 6.73667 6.79080 7.32064 7.60492 8.91173 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.004020 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.673687 B = 6963.305739 C = 8326.265626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.081 4.081 4 H 0.070 0.930 5 C -0.137 4.137 6 C 0.090 3.910 7 H 0.048 0.952 8 C -0.145 4.145 9 N -0.491 5.491 10 C 0.035 3.965 11 C 0.510 3.490 12 O -0.556 6.556 13 N -0.601 5.601 14 C 0.226 3.774 15 C -0.526 4.526 16 H 0.029 0.971 17 C 0.009 3.991 18 N -0.950 5.950 19 Si 0.942 3.058 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.228 1.228 23 C 0.112 3.888 24 C -0.038 4.038 25 C 0.244 3.756 26 N -0.488 5.488 27 C 0.049 3.951 28 C -0.199 4.199 29 C -0.192 4.192 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.129 0.871 43 H 0.057 0.943 44 H 0.023 0.977 45 H 0.264 0.736 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.136 0.864 49 H 0.130 0.870 50 H 0.118 0.882 51 H 0.076 0.924 52 H 0.074 0.926 53 H 0.109 0.891 54 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 -20.114 5.855 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.100 4.100 4 H 0.088 0.912 5 C -0.194 4.194 6 C -0.017 4.017 7 H 0.066 0.934 8 C -0.202 4.202 9 N -0.214 5.214 10 C -0.096 4.096 11 C 0.298 3.702 12 O -0.433 6.433 13 N -0.333 5.333 14 C 0.103 3.897 15 C -0.565 4.565 16 H 0.047 0.953 17 C -0.188 4.188 18 N -0.591 5.591 19 Si 0.765 3.235 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.150 1.150 23 C -0.013 4.013 24 C -0.079 4.079 25 C -0.073 4.073 26 N -0.166 5.166 27 C -0.060 4.060 28 C -0.237 4.237 29 C -0.231 4.231 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.146 0.854 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.113 0.887 48 H 0.154 0.846 49 H 0.148 0.852 50 H 0.136 0.864 51 H 0.094 0.906 52 H 0.093 0.907 53 H 0.127 0.873 54 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.636 -20.119 5.349 24.353 hybrid contribution 1.108 1.199 -0.327 1.665 sum -11.528 -18.920 5.022 22.718 Atomic orbital electron populations 1.21798 0.95572 1.01724 1.01886 1.21585 0.96066 0.95204 1.02393 1.21215 0.93059 0.96850 0.98891 0.91183 1.21738 1.00327 1.00552 0.96776 1.21745 0.95254 0.85982 0.98701 0.93380 1.21914 1.00585 1.00250 0.97434 1.61684 1.08756 1.16436 1.34490 1.22175 1.03992 0.90386 0.93015 1.20866 0.77007 0.89399 0.82923 1.90678 1.44620 1.78179 1.29835 1.47848 1.63158 1.07081 1.15199 1.19340 0.95188 0.78217 0.96925 1.21599 1.00267 0.93188 1.41432 0.95281 1.25818 0.96828 1.01042 0.95148 1.70067 1.21447 1.18087 1.49478 0.85807 0.81255 0.78125 0.78317 1.20583 1.21066 1.15036 1.21481 0.91594 1.01107 0.87075 1.19864 0.95036 1.04546 0.88430 1.29192 0.92197 0.91846 0.94102 1.81286 1.10831 1.11679 1.12842 1.22516 0.85772 1.02296 0.95398 1.23123 1.02791 0.94656 1.03091 1.23510 1.03440 0.93312 1.02855 0.92561 0.92955 0.92444 0.91765 0.91224 0.92760 0.92722 0.93520 0.92426 0.90368 0.92699 0.91237 0.85357 0.92545 0.95882 0.92672 0.89845 0.88709 0.84636 0.85249 0.86441 0.90588 0.90740 0.87283 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 71.98 0.70 -1.00 16 2 C -0.11 -1.33 4.95 30.59 0.15 -1.17 16 3 C -0.08 -1.20 2.09 -10.79 -0.02 -1.22 16 4 H 0.07 1.00 6.28 -2.39 -0.01 0.98 16 5 C -0.14 -2.37 8.14 71.98 0.59 -1.79 16 6 C 0.09 1.54 1.58 44.91 0.07 1.62 16 7 H 0.05 0.77 7.61 -2.39 -0.02 0.76 16 8 C -0.14 -2.27 7.96 71.98 0.57 -1.70 16 9 N -0.49 -11.79 3.44 -850.43 -2.92 -14.72 16 10 C 0.04 0.84 3.38 85.56 0.29 1.13 16 11 C 0.51 17.64 5.51 87.66 0.48 18.13 16 12 O -0.56 -25.00 14.52 -3.05 -0.04 -25.04 16 13 N -0.60 -20.29 2.46 -826.16 -2.03 -22.31 16 14 C 0.23 9.70 4.23 85.63 0.36 10.06 16 15 C -0.53 -28.96 9.94 25.60 0.25 -28.70 16 16 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 17 C 0.01 0.51 5.47 84.65 0.46 0.97 16 18 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 19 Si 0.94 42.61 27.47 68.60 1.88 44.49 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.23 -8.84 6.54 99.48 0.65 -8.19 16 23 C 0.11 2.64 5.15 86.38 0.44 3.09 16 24 C -0.04 -0.60 6.02 28.79 0.17 -0.42 16 25 C 0.24 4.89 15.44 89.44 1.38 6.27 16 26 N -0.49 -12.88 18.54 20.01 0.37 -12.51 16 27 C 0.05 1.32 3.92 44.92 0.18 1.50 16 28 C -0.20 -6.55 8.31 30.62 0.25 -6.29 16 29 C -0.19 -4.41 9.20 30.62 0.28 -4.13 16 30 H 0.06 0.65 6.71 -2.39 -0.02 0.63 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.07 0.76 6.64 -2.39 -0.02 0.75 16 35 H 0.05 0.84 6.88 -2.39 -0.02 0.82 16 36 H 0.05 0.90 6.86 -2.39 -0.02 0.88 16 37 H 0.05 1.09 7.47 -2.39 -0.02 1.07 16 38 H 0.06 1.04 6.80 -2.39 -0.02 1.02 16 39 H 0.08 0.94 6.36 -2.39 -0.02 0.92 16 40 H 0.05 0.89 6.88 -2.39 -0.02 0.87 16 41 H 0.07 1.60 5.40 -2.39 -0.01 1.59 16 42 H 0.13 2.22 4.98 -2.39 -0.01 2.21 16 43 H 0.06 2.15 7.13 -2.39 -0.02 2.13 16 44 H 0.02 1.08 6.85 -2.39 -0.02 1.07 16 45 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 47 H 0.09 1.85 6.47 -2.38 -0.02 1.84 16 48 H 0.14 1.45 7.20 -2.39 -0.02 1.43 16 49 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.12 3.22 8.02 -2.39 -0.02 3.20 16 51 H 0.08 2.85 4.80 -2.39 -0.01 2.84 16 52 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 53 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 54 H 0.10 2.03 7.29 -2.39 -0.02 2.02 16 Total: -1.00 -75.73 412.00 5.01 -70.72 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.83 Total: 21.76 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 6.62 Total: -3.67 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -4.28 Total: -108.26 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.04 Total: -25.04 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Total: -75.73 5.01 -70.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069484263.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.335 kcal (2) G-P(sol) polarization free energy of solvation -75.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds