Wall clock time and date at job start Tue Mar 31 2020 05:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.46494 * 120.00023 * 89.99692 * 10 9 7 12 12 C 1.50701 * 109.46813 * 90.00283 * 11 10 9 13 13 C 1.38225 * 119.62139 * 95.00267 * 12 11 10 14 14 C 1.38631 * 119.16294 * 179.97438 * 13 12 11 15 15 C 1.38670 * 118.41835 * 359.97438 * 14 13 12 16 16 C 1.38185 * 119.16430 * 359.97438 * 15 14 13 17 17 N 1.31851 * 119.61522 * 274.71942 * 12 11 10 18 18 C 1.34776 * 119.99393 * 269.99942 * 10 9 7 19 19 O 1.21289 * 119.99835 * 180.02562 * 18 10 9 20 20 C 1.50699 * 120.00508 * 359.97438 * 18 10 9 21 21 H 1.08998 * 115.54826 * 325.67365 * 20 18 10 22 22 C 1.53000 * 117.49658 * 111.38182 * 20 18 10 23 23 C 1.52997 * 117.49947 * 180.02562 * 20 18 10 24 24 H 1.09001 * 117.50060 * 145.00542 * 23 20 18 25 25 C 1.50696 * 117.50277 * 359.97438 * 23 20 18 26 26 C 1.38235 * 119.99857 * 299.73249 * 25 23 20 27 27 C 1.38240 * 119.99910 * 179.78397 * 26 25 23 28 28 C 1.38235 * 119.99873 * 0.44218 * 27 26 25 29 29 C 1.38239 * 119.99873 * 359.80923 * 28 27 26 30 30 C 1.38231 * 120.00148 * 119.99948 * 25 23 20 31 31 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 33 33 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 34 34 H 1.09004 * 109.46862 * 209.99704 * 11 10 9 35 35 H 1.08990 * 109.47708 * 329.99853 * 11 10 9 36 36 H 1.08005 * 120.41841 * 359.94386 * 13 12 11 37 37 H 1.08001 * 120.78931 * 180.02562 * 14 13 12 38 38 H 1.07997 * 120.41556 * 180.02562 * 15 14 13 39 39 H 1.08000 * 119.61331 * 180.02562 * 16 15 14 40 40 H 1.09001 * 117.49521 * 214.98532 * 22 20 18 41 41 H 1.09001 * 117.50242 * 359.97438 * 22 20 18 42 42 H 1.08001 * 120.00528 * 359.97438 * 26 25 23 43 43 H 1.07999 * 119.99778 * 180.27398 * 27 26 25 44 44 H 1.07998 * 120.00148 * 179.83798 * 28 27 26 45 45 H 1.07997 * 119.99738 * 180.02562 * 29 28 27 46 46 H 1.07998 * 120.00075 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 4.2446 -3.2656 -1.2677 12 6 5.6680 -3.0287 -1.7021 13 6 6.6422 -3.9570 -1.3862 14 6 7.9485 -3.7298 -1.7910 15 6 8.2272 -2.5724 -2.5021 16 6 7.2009 -1.6905 -2.7821 17 7 5.9687 -1.9410 -2.3841 18 6 4.2241 -3.2107 1.1682 19 8 4.6289 -4.3541 1.1682 20 6 3.9730 -2.5004 2.4733 21 1 4.1835 -1.4309 2.4746 22 6 2.8063 -2.9923 3.3322 23 6 4.2471 -3.2755 3.7636 24 1 4.6374 -2.7159 4.6137 25 6 4.7469 -4.6911 3.6323 26 6 3.9785 -5.6377 2.9808 27 6 4.4390 -6.9352 2.8564 28 6 5.6638 -7.2882 3.3914 29 6 6.4298 -6.3427 4.0474 30 6 5.9713 -5.0443 4.1680 31 1 -0.4850 0.8400 -0.0004 32 1 3.8753 -0.6803 -0.8889 33 1 3.8746 -0.6799 0.8911 34 1 4.0776 -4.3348 -1.1376 35 1 3.5641 -2.8814 -2.0275 36 1 6.3890 -4.8479 -0.8306 37 1 8.7303 -4.4378 -1.5588 38 1 9.2335 -2.3633 -2.8336 39 1 7.4097 -0.7870 -3.3358 40 1 2.2487 -2.2463 3.8986 41 1 2.2201 -3.8294 2.9531 42 1 3.0198 -5.3629 2.5663 43 1 3.8407 -7.6737 2.3435 44 1 6.0224 -8.3024 3.2965 45 1 7.3869 -6.6184 4.4650 46 1 6.5698 -4.3057 4.6804 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069490541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:24 Heat of formation + Delta-G solvation = 70.068366 kcal Electronic energy + Delta-G solvation = -29114.552509 eV Core-core repulsion = 25356.560519 eV Total energy + Delta-G solvation = -3757.991990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.32015 -39.79054 -38.32841 -36.09172 -35.03913 -32.74836 -32.24973 -31.56589 -30.57396 -30.13298 -28.16981 -26.67028 -23.77556 -23.42440 -23.31263 -22.40625 -22.11765 -21.50168 -20.07873 -18.21248 -17.25945 -16.96134 -16.61782 -16.32988 -15.84406 -15.43623 -15.30294 -14.90895 -14.68274 -14.35457 -13.96281 -13.86170 -13.54962 -13.27977 -13.09018 -13.01010 -12.74445 -12.65681 -12.50583 -12.08882 -11.87827 -11.66282 -11.54425 -11.46273 -10.96650 -10.79207 -10.72375 -10.57705 -10.35362 -10.18989 -10.02141 -9.74891 -9.60813 -9.34482 -9.22107 -8.84084 -8.66523 -8.44203 -7.86330 -7.74061 -6.17451 -4.17557 1.22588 1.43923 1.71558 1.85650 3.13943 3.21969 3.28782 3.31271 3.62580 4.02820 4.19278 4.31155 4.47613 4.55114 4.88778 4.91777 4.96993 5.12231 5.14064 5.18255 5.19950 5.30348 5.32075 5.32721 5.39563 5.43094 5.60872 5.71732 5.80130 5.83748 5.93893 5.95161 6.13918 6.17260 6.19937 6.29572 6.33799 6.34528 6.41109 6.44560 6.54295 6.77116 6.82651 6.86378 6.90241 7.06802 7.29500 7.40940 7.49536 8.09473 8.22866 8.43358 8.84325 8.92079 9.42699 10.95237 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.008181 B = 0.005362 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3421.616611 B = 5220.785173 C = 7772.584345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.870 3.130 4 H -0.273 1.273 5 H -0.266 1.266 6 H -0.285 1.285 7 C -0.532 4.532 8 H 0.078 0.922 9 C 0.209 3.791 10 N -0.577 5.577 11 C 0.169 3.831 12 C 0.120 3.880 13 C -0.148 4.148 14 C -0.083 4.083 15 C -0.181 4.181 16 C 0.093 3.907 17 N -0.469 5.469 18 C 0.544 3.456 19 O -0.547 6.547 20 C -0.159 4.159 21 H 0.124 0.876 22 C -0.130 4.130 23 C -0.104 4.104 24 H 0.114 0.886 25 C -0.032 4.032 26 C -0.045 4.045 27 C -0.129 4.129 28 C -0.127 4.127 29 C -0.135 4.135 30 C -0.117 4.117 31 H 0.265 0.735 32 H 0.037 0.963 33 H 0.031 0.969 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.819 -8.169 3.141 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.125 4.125 3 Si 0.697 3.303 4 H -0.198 1.198 5 H -0.191 1.191 6 H -0.211 1.211 7 C -0.570 4.570 8 H 0.096 0.904 9 C 0.088 3.912 10 N -0.307 5.307 11 C 0.045 3.955 12 C -0.019 4.019 13 C -0.168 4.168 14 C -0.109 4.109 15 C -0.201 4.201 16 C -0.065 4.065 17 N -0.178 5.178 18 C 0.333 3.667 19 O -0.427 6.427 20 C -0.180 4.180 21 H 0.142 0.858 22 C -0.167 4.167 23 C -0.122 4.122 24 H 0.132 0.868 25 C -0.032 4.032 26 C -0.064 4.064 27 C -0.147 4.147 28 C -0.145 4.145 29 C -0.153 4.153 30 C -0.135 4.135 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.169 0.831 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.169 -8.017 2.915 15.690 hybrid contribution 1.154 0.735 -0.080 1.370 sum 14.322 -7.283 2.835 16.316 Atomic orbital electron populations 1.69889 1.06146 1.27043 1.49975 1.24818 0.94659 0.98716 0.94356 0.86954 0.80259 0.84142 0.78995 1.19834 1.19119 1.21052 1.21319 0.88898 0.94895 1.51932 0.90415 1.19876 0.95796 0.77752 0.97771 1.47826 1.63157 1.16065 1.03607 1.20140 0.89760 0.98552 0.87073 1.21889 0.97556 0.89607 0.92881 1.22135 0.93312 1.01337 1.00050 1.21557 0.96712 0.96839 0.95763 1.22083 1.00669 0.96086 1.01246 1.22743 0.88120 0.98670 0.96923 1.67574 1.21271 1.19253 1.09718 1.19565 0.76766 0.85777 0.84590 1.90667 1.47637 1.17494 1.86946 1.22199 1.06052 1.00048 0.89718 0.85785 1.22977 0.89969 1.03052 1.00733 1.21174 0.99824 0.93942 0.97307 0.86827 1.18848 0.94261 0.92760 0.97357 1.20759 0.99185 0.92105 0.94302 1.20914 0.96579 0.96376 1.00821 1.20933 0.95290 0.98776 0.99528 1.20859 0.99528 0.93622 1.01309 1.20749 0.95643 0.96101 1.01045 0.92485 0.94477 0.95137 0.89034 0.88418 0.84330 0.85289 0.85306 0.83104 0.87519 0.88085 0.86833 0.87048 0.87225 0.87135 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.96 55.43 0.77 -25.02 16 2 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.53 -13.87 9.94 -34.44 -0.34 -14.21 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 9 C 0.21 4.70 4.06 -5.19 -0.02 4.68 16 10 N -0.58 -11.66 2.44 -176.44 -0.43 -12.09 16 11 C 0.17 3.10 5.71 -5.20 -0.03 3.07 16 12 C 0.12 2.05 6.36 -82.59 -0.53 1.53 16 13 C -0.15 -2.25 9.72 -39.44 -0.38 -2.63 16 14 C -0.08 -1.05 10.18 -39.28 -0.40 -1.45 16 15 C -0.18 -2.16 10.11 -39.44 -0.40 -2.56 16 16 C 0.09 1.29 11.18 -17.55 -0.20 1.10 16 17 N -0.47 -8.14 10.27 -9.47 -0.10 -8.24 16 18 C 0.54 10.53 7.32 -10.99 -0.08 10.45 16 19 O -0.55 -10.63 11.26 5.55 0.06 -10.57 16 20 C -0.16 -2.80 5.29 -91.77 -0.49 -3.28 16 21 H 0.12 2.19 6.44 -51.93 -0.33 1.85 16 22 C -0.13 -2.07 9.58 -26.71 -0.26 -2.33 16 23 C -0.10 -1.56 6.04 -91.75 -0.55 -2.11 16 24 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 25 C -0.03 -0.50 4.35 -104.63 -0.46 -0.96 16 26 C -0.05 -0.73 6.19 -39.58 -0.24 -0.97 16 27 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 28 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 29 C -0.14 -1.80 10.05 -39.58 -0.40 -2.20 16 30 C -0.12 -1.68 9.74 -39.59 -0.39 -2.07 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 0.86 7.50 -51.93 -0.39 0.47 16 33 H 0.03 0.68 5.05 -51.93 -0.26 0.42 16 34 H 0.09 1.59 7.32 -51.93 -0.38 1.21 16 35 H 0.10 1.86 8.07 -51.93 -0.42 1.44 16 36 H 0.14 2.11 8.01 -52.48 -0.42 1.69 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.10 1.67 6.17 -51.93 -0.32 1.35 16 42 H 0.11 1.90 5.80 -52.49 -0.30 1.59 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 46 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -30.48 380.96 -10.89 -41.37 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.23 Total: 9.59 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -6.05 Total: -16.35 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.25 Total: -45.34 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.06 Total: -10.57 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.48 -10.89 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069490541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.439 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds