Wall clock time and date at job start Tue Mar 31 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86810 * 119.99614 * 2 1 4 4 H 1.48498 * 109.46874 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46887 * 239.99774 * 3 2 1 6 6 H 1.48500 * 109.46807 * 119.99829 * 3 2 1 7 7 C 1.37874 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99979 * 185.02704 * 7 2 1 9 9 C 1.50696 * 119.99943 * 5.03528 * 7 2 1 10 10 N 1.46501 * 109.47114 * 184.80053 * 9 7 2 11 11 C 1.46495 * 119.99970 * 264.45831 * 10 9 7 12 12 C 1.50705 * 109.47216 * 90.00077 * 11 10 9 13 13 C 1.38229 * 119.61590 * 94.99286 * 12 11 10 14 14 C 1.38627 * 119.16012 * 179.97438 * 13 12 11 15 15 C 1.38676 * 118.41879 * 0.02562 * 14 13 12 16 16 C 1.38177 * 119.16631 * 359.97438 * 15 14 13 17 17 N 1.31850 * 119.61815 * 274.73060 * 12 11 10 18 18 C 1.34778 * 120.00074 * 84.46580 * 10 9 7 19 19 O 1.21279 * 119.99967 * 184.89111 * 18 10 9 20 20 C 1.50701 * 120.00180 * 4.88429 * 18 10 9 21 21 H 1.09003 * 115.54702 * 331.22410 * 20 18 10 22 22 C 1.53000 * 117.49862 * 116.93005 * 20 18 10 23 23 C 1.52992 * 117.50018 * 185.55510 * 20 18 10 24 24 H 1.09004 * 117.49917 * 359.97438 * 23 20 18 25 25 C 1.50701 * 117.49905 * 144.99876 * 23 20 18 26 26 C 1.38230 * 120.00285 * 59.72552 * 25 23 20 27 27 C 1.38229 * 120.00251 * 179.76868 * 26 25 23 28 28 C 1.38238 * 120.00002 * 0.47964 * 27 26 25 29 29 C 1.38234 * 119.99785 * 359.80051 * 28 27 26 30 30 C 1.38235 * 120.00342 * 359.94507 * 29 28 27 31 31 H 0.97005 * 119.99629 * 174.91906 * 1 2 3 32 32 H 1.09004 * 109.47329 * 304.79669 * 9 7 2 33 33 H 1.09004 * 109.47382 * 64.79827 * 9 7 2 34 34 H 1.09006 * 109.47465 * 209.99869 * 11 10 9 35 35 H 1.09001 * 109.47424 * 330.00560 * 11 10 9 36 36 H 1.07997 * 120.42058 * 359.96707 * 13 12 11 37 37 H 1.07997 * 120.79085 * 180.02562 * 14 13 12 38 38 H 1.08004 * 120.41957 * 180.02562 * 15 14 13 39 39 H 1.08002 * 119.61996 * 180.02562 * 16 15 14 40 40 H 1.08992 * 117.49792 * 214.97862 * 22 20 18 41 41 H 1.09000 * 117.49703 * 0.02562 * 22 20 18 42 42 H 1.08003 * 119.99808 * 0.02562 * 26 25 23 43 43 H 1.08004 * 120.00566 * 180.25641 * 27 26 25 44 44 H 1.08002 * 120.00230 * 179.76629 * 28 27 26 45 45 H 1.08006 * 120.00068 * 179.97438 * 29 28 27 46 46 H 1.07994 * 120.00444 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6965 -1.2125 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0815 -1.1957 0.0825 9 6 1.2556 -2.4966 -0.1134 10 7 2.1938 -3.6132 0.0255 11 6 2.7575 -4.2490 -1.1678 12 6 4.0369 -3.5513 -1.5519 13 6 5.2474 -4.0539 -1.1128 14 6 6.4185 -3.4050 -1.4721 15 6 6.3279 -2.2693 -2.2628 16 6 5.0822 -1.8257 -2.6638 17 7 3.9890 -2.4716 -2.3071 18 6 2.5381 -4.0555 1.2512 19 8 3.3810 -4.9195 1.3693 20 6 1.8760 -3.4765 2.4748 21 1 1.5331 -2.4461 2.3806 22 6 1.0423 -4.4225 3.3414 23 6 2.4002 -3.9245 3.8405 24 1 3.2238 -4.6384 3.8540 25 6 2.4029 -2.9075 4.9526 26 6 1.2177 -2.3225 5.3573 27 6 1.2195 -1.3932 6.3806 28 6 2.4081 -1.0414 6.9926 29 6 3.5942 -1.6220 6.5840 30 6 3.5916 -2.5553 5.5642 31 1 -0.4850 -0.8368 -0.0744 32 1 0.5039 -2.5536 0.6739 33 1 0.7674 -2.5512 -1.0865 34 1 2.9650 -5.2982 -0.9569 35 1 2.0442 -4.1776 -1.9889 36 1 5.2804 -4.9409 -0.4975 37 1 7.3787 -3.7750 -1.1441 38 1 7.2197 -1.7387 -2.5621 39 1 5.0031 -0.9423 -3.2800 40 1 0.1507 -4.0146 3.8174 41 1 0.9732 -5.4638 3.0267 42 1 0.2895 -2.5947 4.8767 43 1 0.2929 -0.9393 6.6996 44 1 2.4101 -0.3125 7.7895 45 1 4.5229 -1.3469 7.0618 46 1 4.5182 -3.0092 5.2453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069490543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:27 Heat of formation + Delta-G solvation = 51.767060 kcal Electronic energy + Delta-G solvation = -28741.717856 eV Core-core repulsion = 24982.932263 eV Total energy + Delta-G solvation = -3758.785594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12720 -39.60044 -38.68840 -36.16581 -35.13689 -32.93212 -32.02829 -31.32515 -30.79764 -30.32726 -27.41815 -26.21465 -23.84674 -23.50418 -23.10818 -22.71525 -22.21891 -21.41767 -20.14843 -18.42987 -17.36464 -16.94008 -16.58119 -16.28570 -15.66650 -15.51459 -15.25012 -14.87917 -14.64676 -14.38460 -13.81487 -13.73781 -13.66209 -13.22439 -13.08319 -12.91327 -12.72578 -12.62875 -12.48992 -12.08492 -11.74719 -11.69507 -11.49931 -11.31013 -11.10699 -10.88882 -10.78921 -10.61191 -10.33053 -10.12257 -10.09743 -9.49586 -9.33557 -9.24488 -8.87829 -8.75941 -8.62555 -8.40849 -8.34808 -7.73804 -6.39553 -4.12180 1.43583 1.48940 1.56456 1.69486 3.05291 3.42206 3.43222 3.61069 3.68338 3.88207 4.33626 4.37536 4.50304 4.73045 4.83482 4.99946 5.06007 5.11224 5.15062 5.18628 5.23806 5.25206 5.31570 5.37847 5.40968 5.50178 5.62820 5.65637 5.75349 5.85791 5.86846 5.91554 6.06095 6.13435 6.13763 6.20233 6.28863 6.46270 6.48018 6.51037 6.58280 6.63986 6.65364 6.83932 6.87607 7.07946 7.15359 7.36623 7.96234 8.09605 8.46701 8.51804 8.77390 8.86357 9.54758 10.96526 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.004468 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.406160 B = 6264.751508 C = 7369.919567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.026 3.974 3 Si 1.061 2.939 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.591 4.591 8 H 0.050 0.950 9 C 0.232 3.768 10 N -0.581 5.581 11 C 0.171 3.829 12 C 0.123 3.877 13 C -0.154 4.154 14 C -0.087 4.087 15 C -0.182 4.182 16 C 0.097 3.903 17 N -0.444 5.444 18 C 0.551 3.449 19 O -0.571 6.571 20 C -0.158 4.158 21 H 0.141 0.859 22 C -0.149 4.149 23 C -0.092 4.092 24 H 0.121 0.879 25 C -0.043 4.043 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.129 4.129 29 C -0.120 4.120 30 C -0.112 4.112 31 H 0.267 0.733 32 H 0.029 0.971 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.150 0.850 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 -6.385 5.626 10.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.179 4.179 3 Si 0.890 3.110 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.630 4.630 8 H 0.068 0.932 9 C 0.112 3.888 10 N -0.310 5.310 11 C 0.047 3.953 12 C -0.016 4.016 13 C -0.174 4.174 14 C -0.113 4.113 15 C -0.202 4.202 16 C -0.061 4.061 17 N -0.153 5.153 18 C 0.340 3.660 19 O -0.453 6.453 20 C -0.179 4.179 21 H 0.158 0.842 22 C -0.186 4.186 23 C -0.111 4.111 24 H 0.139 0.861 25 C -0.043 4.043 26 C -0.133 4.133 27 C -0.135 4.135 28 C -0.147 4.147 29 C -0.138 4.138 30 C -0.130 4.130 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.167 0.833 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.701 -4.865 5.435 9.258 hybrid contribution 1.220 -1.499 0.072 1.934 sum 6.921 -6.363 5.506 10.896 Atomic orbital electron populations 1.70831 1.06699 1.30616 1.46495 1.25613 0.96317 1.02212 0.93717 0.83635 0.75072 0.75673 0.76604 1.20763 1.21359 1.21623 1.22124 0.94896 0.91264 1.54667 0.93168 1.19549 0.88132 0.83993 0.97147 1.47935 1.44943 1.34545 1.03553 1.20147 0.91392 0.95266 0.88529 1.21618 0.95072 0.91997 0.92912 1.22047 0.92984 1.01914 1.00450 1.21470 0.98486 0.95025 0.96291 1.22068 0.99295 0.98129 1.00696 1.22723 0.87767 0.98383 0.97206 1.67569 1.31652 1.05608 1.10489 1.19475 0.81460 0.81003 0.84042 1.90557 1.33891 1.34049 1.86780 1.22453 1.04042 1.02201 0.89177 0.84151 1.23049 0.94438 0.99257 1.01859 1.21036 0.98784 0.99535 0.91726 0.86095 1.19164 0.93402 0.96353 0.95376 1.21092 0.98007 0.97003 0.97217 1.21103 0.98117 0.97694 0.96563 1.21096 0.92846 1.00277 1.00495 1.21078 0.97992 0.97230 0.97544 1.20966 0.97521 0.98126 0.96362 0.92303 0.95319 0.95516 0.89509 0.89337 0.84795 0.85548 0.85494 0.83268 0.87829 0.88245 0.85816 0.86152 0.86407 0.86299 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.01 13.65 55.43 0.76 -25.25 16 2 C 0.03 0.71 5.45 -17.82 -0.10 0.61 16 3 Si 1.06 25.29 29.91 -169.99 -5.08 20.20 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.59 -15.67 8.91 -34.44 -0.31 -15.98 16 8 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 9 C 0.23 5.47 4.27 -5.19 -0.02 5.45 16 10 N -0.58 -12.22 2.45 -176.43 -0.43 -12.65 16 11 C 0.17 3.21 5.72 -5.19 -0.03 3.18 16 12 C 0.12 2.37 6.36 -82.59 -0.53 1.85 16 13 C -0.15 -2.64 9.72 -39.44 -0.38 -3.03 16 14 C -0.09 -1.29 10.18 -39.28 -0.40 -1.69 16 15 C -0.18 -2.67 10.11 -39.44 -0.40 -3.07 16 16 C 0.10 1.67 11.18 -17.55 -0.20 1.47 16 17 N -0.44 -8.99 10.27 -9.47 -0.10 -9.08 16 18 C 0.55 11.41 7.39 -10.98 -0.08 11.33 16 19 O -0.57 -12.19 15.66 5.56 0.09 -12.11 16 20 C -0.16 -2.98 4.70 -91.78 -0.43 -3.41 16 21 H 0.14 3.04 6.54 -51.93 -0.34 2.70 16 22 C -0.15 -2.25 9.56 -26.73 -0.26 -2.50 16 23 C -0.09 -1.50 5.55 -91.77 -0.51 -2.01 16 24 H 0.12 2.00 7.68 -51.93 -0.40 1.60 16 25 C -0.04 -0.67 5.61 -104.62 -0.59 -1.26 16 26 C -0.12 -1.71 9.29 -39.59 -0.37 -2.08 16 27 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 28 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 29 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 30 C -0.11 -1.64 9.74 -39.58 -0.39 -2.02 16 31 H 0.27 7.48 7.15 -40.82 -0.29 7.18 16 32 H 0.03 0.69 6.22 -51.93 -0.32 0.37 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 34 H 0.09 1.48 7.39 -51.93 -0.38 1.09 16 35 H 0.09 1.58 7.86 -51.93 -0.41 1.18 16 36 H 0.13 2.24 7.82 -52.49 -0.41 1.83 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 39 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 40 H 0.10 1.39 6.19 -51.93 -0.32 1.07 16 41 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.12 1.71 6.03 -52.48 -0.32 1.39 16 43 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 46 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 390.23 15.07 5.88 5.88 Total: -1.00 -31.50 390.23 -11.25 -42.75 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.19 Total: 9.42 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -6.17 Total: -19.15 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.23 Total: -46.99 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.50 -11.25 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069490543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.514 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds