Wall clock time and date at job start Tue Mar 31 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99724 * 2 1 4 4 H 1.48504 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47592 * 299.99652 * 3 2 1 6 6 H 1.48506 * 109.47368 * 60.00071 * 3 2 1 7 7 C 1.37876 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99601 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46749 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99753 * 269.99867 * 10 9 7 12 12 C 1.50699 * 109.46946 * 269.99920 * 11 10 9 13 13 C 1.38231 * 119.61685 * 95.00173 * 12 11 10 14 14 C 1.38626 * 119.15894 * 179.97438 * 13 12 11 15 15 C 1.38671 * 118.42195 * 0.02562 * 14 13 12 16 16 C 1.38181 * 119.16755 * 359.97438 * 15 14 13 17 17 N 1.31854 * 119.61720 * 274.72756 * 12 11 10 18 18 C 1.34778 * 120.00385 * 89.99774 * 10 9 7 19 19 O 1.21273 * 120.00021 * 179.97438 * 18 10 9 20 20 C 1.50698 * 119.99688 * 0.02562 * 18 10 9 21 21 H 1.09000 * 115.56195 * 34.30708 * 20 18 10 22 22 C 1.53009 * 117.49827 * 248.62237 * 20 18 10 23 23 C 1.53001 * 59.99854 * 252.50858 * 22 20 18 24 24 H 1.08999 * 117.50282 * 107.50708 * 23 22 20 25 25 C 1.50702 * 117.50227 * 252.51080 * 23 22 20 26 26 C 1.38234 * 120.00257 * 188.61152 * 25 23 22 27 27 C 1.38238 * 119.99675 * 180.25732 * 26 25 23 28 28 C 1.38228 * 120.00110 * 359.52133 * 27 26 25 29 29 C 1.38234 * 120.00090 * 0.43562 * 28 27 26 30 30 C 1.38235 * 119.99522 * 8.58164 * 25 23 22 31 31 H 0.97001 * 120.00532 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.47210 * 59.99875 * 9 7 2 33 33 H 1.08997 * 109.46779 * 299.99636 * 9 7 2 34 34 H 1.08996 * 109.47476 * 30.00164 * 11 10 9 35 35 H 1.09008 * 109.47112 * 150.00126 * 11 10 9 36 36 H 1.07992 * 120.42052 * 0.02562 * 13 12 11 37 37 H 1.08006 * 120.79016 * 179.97438 * 14 13 12 38 38 H 1.08012 * 120.41802 * 180.02562 * 15 14 13 39 39 H 1.07993 * 119.62033 * 180.02562 * 16 15 14 40 40 H 1.08992 * 117.49621 * 145.02459 * 22 20 18 41 41 H 1.09002 * 117.49535 * 359.97438 * 22 20 18 42 42 H 1.08002 * 119.99744 * 359.97115 * 26 25 23 43 43 H 1.08004 * 119.99577 * 179.72816 * 27 26 25 44 44 H 1.07998 * 119.99898 * 180.21654 * 28 27 26 45 45 H 1.08001 * 120.00324 * 179.78918 * 29 28 27 46 46 H 1.07996 * 120.00471 * 0.02562 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.6800 -4.1699 -1.2664 12 6 1.7636 -5.2843 -1.7016 13 6 0.7336 -5.0166 -2.5837 14 6 -0.1033 -6.0490 -2.9781 15 6 0.1277 -7.3175 -2.4678 16 6 1.1773 -7.5094 -1.5898 17 7 1.9570 -6.5044 -1.2407 18 6 2.6402 -4.1243 1.1695 19 8 3.4279 -5.0463 1.1705 20 6 2.1491 -3.5514 2.4740 21 1 1.1178 -3.1986 2.4741 22 6 3.1575 -2.7865 3.3338 23 6 2.6824 -4.1755 3.7651 24 1 3.3885 -5.0006 3.6712 25 6 1.7416 -4.2557 4.9396 26 6 1.4204 -5.4844 5.4853 27 6 0.5532 -5.5582 6.5593 28 6 0.0150 -4.4026 7.0938 29 6 0.3368 -3.1738 6.5486 30 6 1.2003 -3.1003 5.4715 31 1 -0.4851 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6241 -2.5566 0.8903 34 1 2.6883 -3.3886 -2.0264 35 1 3.6894 -4.5598 -1.1351 36 1 0.5833 -4.0162 -2.9615 37 1 -0.9165 -5.8694 -3.6659 38 1 -0.5043 -8.1454 -2.7537 39 1 1.3641 -8.4943 -1.1883 40 1 2.7895 -1.9308 3.8996 41 1 4.1761 -2.6982 2.9561 42 1 1.8433 -6.3871 5.0697 43 1 0.2988 -6.5186 6.9829 44 1 -0.6598 -4.4601 7.9351 45 1 -0.0863 -2.2711 6.9640 46 1 1.4512 -2.1403 5.0452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069490544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:30 Heat of formation + Delta-G solvation = 52.969312 kcal Electronic energy + Delta-G solvation = -28246.780683 eV Core-core repulsion = 24488.047223 eV Total energy + Delta-G solvation = -3758.733460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11003 -39.64500 -38.62529 -36.06108 -34.95613 -32.83739 -32.17332 -31.40119 -30.81591 -30.32386 -27.68302 -26.46947 -23.83870 -23.41012 -23.31777 -22.73688 -22.23322 -21.40131 -20.06645 -18.17998 -17.22312 -16.80097 -16.49531 -16.14647 -15.82961 -15.58257 -15.25265 -14.91332 -14.74026 -14.47017 -14.17802 -13.83856 -13.49169 -13.25454 -13.16027 -12.88612 -12.72601 -12.62189 -12.36530 -12.01694 -11.66577 -11.56299 -11.48371 -11.30310 -11.08868 -10.94095 -10.86323 -10.70753 -10.33576 -10.14945 -9.93396 -9.78258 -9.64597 -9.12580 -9.10059 -8.79405 -8.74521 -8.54649 -8.34342 -7.74554 -6.19237 -4.25874 1.30194 1.45181 1.52927 1.53291 3.20019 3.26934 3.29700 3.34024 3.70634 3.89159 4.25671 4.33318 4.48524 4.62563 4.87419 4.99280 5.01281 5.04641 5.09517 5.14142 5.24666 5.25797 5.27017 5.35247 5.40778 5.46539 5.63485 5.69293 5.76546 5.79530 5.88412 6.01829 6.07523 6.14625 6.22454 6.23593 6.36176 6.40072 6.41025 6.47115 6.61853 6.64006 6.73613 6.86073 6.92996 7.13276 7.18476 7.51724 7.75854 8.05032 8.28892 8.36838 8.79898 9.06628 9.41911 10.87609 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.006708 B = 0.004808 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4173.267184 B = 5822.265069 C = 8796.726104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.239 3.761 10 N -0.588 5.588 11 C 0.168 3.832 12 C 0.120 3.880 13 C -0.156 4.156 14 C -0.081 4.081 15 C -0.182 4.182 16 C 0.092 3.908 17 N -0.459 5.459 18 C 0.546 3.454 19 O -0.554 6.554 20 C -0.149 4.149 21 H 0.125 0.875 22 C -0.133 4.133 23 C -0.104 4.104 24 H 0.122 0.878 25 C -0.041 4.041 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.131 4.131 29 C -0.118 4.118 30 C -0.118 4.118 31 H 0.264 0.736 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -9.439 4.005 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.081 0.919 9 C 0.119 3.881 10 N -0.318 5.318 11 C 0.044 3.956 12 C -0.019 4.019 13 C -0.176 4.176 14 C -0.107 4.107 15 C -0.202 4.202 16 C -0.066 4.066 17 N -0.168 5.168 18 C 0.334 3.666 19 O -0.433 6.433 20 C -0.170 4.170 21 H 0.143 0.857 22 C -0.170 4.170 23 C -0.122 4.122 24 H 0.140 0.860 25 C -0.041 4.041 26 C -0.132 4.132 27 C -0.140 4.140 28 C -0.149 4.149 29 C -0.136 4.136 30 C -0.136 4.136 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.167 0.833 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.324 -9.917 4.563 10.921 hybrid contribution -0.731 1.231 -0.745 1.614 sum -1.056 -8.686 3.818 9.547 Atomic orbital electron populations 1.69932 1.05992 1.27115 1.50045 1.24916 0.94790 0.99173 0.94853 0.86501 0.80225 0.83403 0.77717 1.19608 1.20954 1.20876 1.21506 0.93640 0.90263 1.51519 0.91940 1.19462 0.87496 0.82596 0.98527 1.48041 1.45879 1.34474 1.03388 1.20125 0.96375 0.91885 0.87245 1.21910 0.94923 0.92800 0.92251 1.22121 0.95905 1.00538 0.99075 1.21542 0.98239 0.92761 0.98146 1.22088 1.00038 0.97985 1.00131 1.22759 0.91348 0.98052 0.94411 1.67650 1.27561 0.99672 1.21890 1.19452 0.80590 0.81866 0.84646 1.90622 1.35690 1.29470 1.87514 1.22235 1.01158 1.04371 0.89193 0.85681 1.22948 0.99120 0.93978 1.00970 1.21138 1.00568 0.98550 0.91985 0.86046 1.19224 0.96509 0.93226 0.95149 1.21000 0.98413 0.97275 0.96465 1.21080 0.97797 0.98229 0.96847 1.21088 1.00659 0.92794 1.00403 1.21119 0.98141 0.97689 0.96641 1.21184 0.97306 0.98587 0.96483 0.92643 0.94845 0.94393 0.88700 0.89177 0.84466 0.85141 0.85353 0.83316 0.87828 0.88180 0.86058 0.86348 0.86489 0.86196 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 13.29 55.43 0.74 -23.23 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.05 29.54 -169.99 -5.02 15.02 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -13.30 9.39 -34.44 -0.32 -13.62 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.24 5.55 4.99 -5.19 -0.03 5.53 16 10 N -0.59 -12.45 2.44 -176.44 -0.43 -12.88 16 11 C 0.17 3.19 5.71 -5.19 -0.03 3.16 16 12 C 0.12 2.15 6.36 -82.59 -0.53 1.63 16 13 C -0.16 -2.43 9.72 -39.44 -0.38 -2.81 16 14 C -0.08 -1.06 10.18 -39.28 -0.40 -1.46 16 15 C -0.18 -2.29 10.11 -39.44 -0.40 -2.69 16 16 C 0.09 1.35 11.18 -17.55 -0.20 1.16 16 17 N -0.46 -8.41 10.27 -9.47 -0.10 -8.50 16 18 C 0.55 11.70 7.45 -10.99 -0.08 11.61 16 19 O -0.55 -12.74 15.84 5.56 0.09 -12.66 16 20 C -0.15 -2.84 4.92 -91.77 -0.45 -3.29 16 21 H 0.13 2.52 6.44 -51.93 -0.33 2.18 16 22 C -0.13 -2.23 9.56 -26.73 -0.26 -2.49 16 23 C -0.10 -1.72 5.55 -91.77 -0.51 -2.23 16 24 H 0.12 2.08 7.67 -51.93 -0.40 1.68 16 25 C -0.04 -0.62 5.61 -104.62 -0.59 -1.21 16 26 C -0.11 -1.58 9.74 -39.58 -0.39 -1.96 16 27 C -0.12 -1.48 10.05 -39.59 -0.40 -1.88 16 28 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 29 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 30 C -0.12 -1.70 9.30 -39.58 -0.37 -2.07 16 31 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 0.94 5.99 -51.93 -0.31 0.62 16 34 H 0.09 1.67 7.97 -51.93 -0.41 1.25 16 35 H 0.09 1.77 7.42 -51.92 -0.39 1.38 16 36 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 37 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 38 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.10 1.60 6.18 -51.93 -0.32 1.28 16 41 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.13 1.78 6.02 -52.49 -0.32 1.47 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -30.37 392.57 -11.27 -41.64 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.25 Total: 9.60 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -6.21 Total: -14.90 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.21 Total: -44.61 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.37 -11.27 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069490544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.605 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds