Wall clock time and date at job start Tue Mar 31 2020 05:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00046 * 2 1 4 4 H 1.48495 * 109.46895 * 269.99800 * 3 2 1 5 5 H 1.48495 * 109.46818 * 29.99707 * 3 2 1 6 6 H 1.48496 * 109.47091 * 149.99763 * 3 2 1 7 7 C 1.37883 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99811 * 0.02562 * 7 2 1 9 9 C 1.50692 * 119.99842 * 180.02562 * 7 2 1 10 10 N 1.46511 * 109.46822 * 180.02562 * 9 7 2 11 11 C 1.46495 * 119.99893 * 89.99950 * 10 9 7 12 12 C 1.50694 * 109.47078 * 269.99869 * 11 10 9 13 13 C 1.38222 * 119.61971 * 95.00133 * 12 11 10 14 14 C 1.38630 * 119.16715 * 179.97438 * 13 12 11 15 15 C 1.38674 * 118.41731 * 0.02562 * 14 13 12 16 16 C 1.38187 * 119.16260 * 359.97438 * 15 14 13 17 17 N 1.31864 * 119.62193 * 275.25515 * 12 11 10 18 18 C 1.34777 * 119.99826 * 270.00108 * 10 9 7 19 19 O 1.21277 * 119.99823 * 180.02562 * 18 10 9 20 20 C 1.50708 * 120.00133 * 359.97438 * 18 10 9 21 21 H 1.09002 * 115.54433 * 34.28215 * 20 18 10 22 22 C 1.52995 * 117.50034 * 248.61393 * 20 18 10 23 23 C 1.52995 * 117.49974 * 179.97438 * 20 18 10 24 24 H 1.08998 * 117.49762 * 214.98266 * 23 20 18 25 25 C 1.50699 * 117.49641 * 359.97438 * 23 20 18 26 26 C 1.38235 * 120.00448 * 59.72751 * 25 23 20 27 27 C 1.38226 * 120.00315 * 179.78342 * 26 25 23 28 28 C 1.38235 * 120.00138 * 0.44741 * 27 26 25 29 29 C 1.38236 * 120.00041 * 359.80730 * 28 27 26 30 30 C 1.38234 * 119.99553 * 359.97438 * 29 28 27 31 31 H 0.97003 * 119.99919 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47197 * 60.00236 * 9 7 2 33 33 H 1.08996 * 109.47480 * 299.99674 * 9 7 2 34 34 H 1.09001 * 109.46799 * 150.00141 * 11 10 9 35 35 H 1.09001 * 109.47178 * 29.99994 * 11 10 9 36 36 H 1.08003 * 120.41979 * 359.96229 * 13 12 11 37 37 H 1.07997 * 120.79126 * 180.02562 * 14 13 12 38 38 H 1.07997 * 120.41840 * 179.97438 * 15 14 13 39 39 H 1.08002 * 119.61408 * 179.97438 * 16 15 14 40 40 H 1.09005 * 117.49630 * 359.97438 * 22 20 18 41 41 H 1.08993 * 117.50440 * 144.99833 * 22 20 18 42 42 H 1.08005 * 119.99509 * 359.97438 * 26 25 23 43 43 H 1.08005 * 119.99988 * 180.27303 * 27 26 25 44 44 H 1.08003 * 120.00108 * 179.83453 * 28 27 26 45 45 H 1.07994 * 120.00219 * 179.97438 * 29 28 27 46 46 H 1.08000 * 119.99969 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.2445 -3.2656 -1.2678 12 6 2.9889 -3.9759 -1.7034 13 6 2.1238 -3.3553 -2.5848 14 6 0.9717 -4.0175 -2.9797 15 6 0.7315 -5.2849 -2.4706 16 6 1.6423 -5.8417 -1.5931 17 7 2.7257 -5.1803 -1.2354 18 6 4.2240 -3.2109 1.1682 19 8 4.6288 -4.3541 1.1681 20 6 3.9729 -2.5005 2.4734 21 1 3.1379 -1.7998 2.4741 22 6 5.1893 -2.1509 3.3329 23 6 4.2458 -3.2761 3.7637 24 1 3.5904 -3.0856 4.6135 25 6 4.7446 -4.6920 3.6321 26 6 5.9312 -4.9483 2.9708 27 6 6.3909 -6.2466 2.8541 28 6 5.6595 -7.2897 3.3905 29 6 4.4703 -7.0341 4.0473 30 6 4.0128 -5.7353 4.1679 31 1 -0.4850 0.8401 -0.0004 32 1 3.8745 -0.6800 0.8911 33 1 3.8752 -0.6804 -0.8888 34 1 5.0464 -3.9923 -1.1372 35 1 4.5329 -2.5387 -2.0271 36 1 2.3424 -2.3668 -2.9610 37 1 0.2777 -3.5574 -3.6675 38 1 -0.1561 -5.8297 -2.7561 39 1 1.4623 -6.8281 -1.1918 40 1 6.1713 -2.4351 2.9546 41 1 5.1548 -1.2203 3.8992 42 1 6.5005 -4.1336 2.5481 43 1 7.3202 -6.4463 2.3412 44 1 6.0175 -8.3044 3.2970 45 1 3.8987 -7.8491 4.4660 46 1 3.0839 -5.5354 4.6814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069490545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:33 Heat of formation + Delta-G solvation = 71.377537 kcal Electronic energy + Delta-G solvation = -29367.039392 eV Core-core repulsion = 25609.104172 eV Total energy + Delta-G solvation = -3757.935220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.16129 -39.52177 -38.20175 -36.05443 -34.97245 -32.69351 -31.90149 -31.30811 -30.49343 -30.05912 -28.20093 -26.50870 -23.67557 -23.41123 -22.98129 -22.27226 -22.04209 -21.30702 -20.08686 -18.19019 -17.11251 -17.02464 -16.37398 -16.06537 -15.73821 -15.23516 -15.10801 -14.83764 -14.62364 -14.21678 -14.02231 -13.53066 -13.43315 -13.06898 -12.95786 -12.79740 -12.66996 -12.50879 -12.41334 -12.06446 -11.87485 -11.63043 -11.55962 -11.30951 -10.96812 -10.74275 -10.70540 -10.60319 -10.28883 -10.23526 -10.06135 -9.64560 -9.31935 -9.13454 -8.88345 -8.75099 -8.46821 -8.33710 -7.80284 -7.63133 -6.22111 -4.23094 1.60628 1.79865 1.86699 1.94722 3.13855 3.21556 3.22774 3.24255 3.79153 4.11883 4.24137 4.45421 4.49467 4.80784 4.93457 5.07044 5.14960 5.22353 5.27460 5.29284 5.30683 5.38422 5.46869 5.48633 5.55072 5.63683 5.75220 5.83713 5.89029 5.93913 6.01264 6.06329 6.20024 6.26223 6.27962 6.39746 6.43558 6.48485 6.51079 6.63851 6.65041 6.71546 6.91876 6.96509 7.12504 7.22114 7.34335 7.43433 7.49170 8.14574 8.41223 8.60051 8.86062 9.03600 9.37397 10.90306 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.005126 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.826991 B = 5461.326107 C = 7358.497784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.867 3.133 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.207 3.793 10 N -0.586 5.586 11 C 0.174 3.826 12 C 0.121 3.879 13 C -0.129 4.129 14 C -0.079 4.079 15 C -0.179 4.179 16 C 0.086 3.914 17 N -0.458 5.458 18 C 0.544 3.456 19 O -0.525 6.525 20 C -0.163 4.163 21 H 0.139 0.861 22 C -0.155 4.155 23 C -0.093 4.093 24 H 0.115 0.885 25 C -0.035 4.035 26 C -0.044 4.044 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.133 4.133 30 C -0.113 4.113 31 H 0.265 0.735 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.145 0.855 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.403 -6.952 1.405 10.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.694 3.306 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.095 0.905 9 C 0.086 3.914 10 N -0.317 5.317 11 C 0.050 3.950 12 C -0.019 4.019 13 C -0.149 4.149 14 C -0.105 4.105 15 C -0.199 4.199 16 C -0.071 4.071 17 N -0.167 5.167 18 C 0.332 3.668 19 O -0.402 6.402 20 C -0.184 4.184 21 H 0.157 0.843 22 C -0.192 4.192 23 C -0.112 4.112 24 H 0.133 0.867 25 C -0.035 4.035 26 C -0.062 4.062 27 C -0.148 4.148 28 C -0.143 4.143 29 C -0.151 4.151 30 C -0.131 4.131 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.051 -7.788 1.980 12.103 hybrid contribution -0.976 1.603 -0.838 2.055 sum 8.075 -6.185 1.142 10.235 Atomic orbital electron populations 1.69900 1.06203 1.26986 1.49691 1.24871 0.94652 0.98667 0.94475 0.86988 0.80522 0.84244 0.78833 1.20046 1.21037 1.18789 1.21370 0.89008 0.94835 1.51892 0.90466 1.19854 0.95993 0.78041 0.97521 1.47825 1.64776 1.15206 1.03901 1.20066 0.93237 0.95419 0.86271 1.21558 0.97164 0.90669 0.92485 1.21911 0.94747 1.00093 0.98154 1.21463 0.96449 0.94208 0.98410 1.22019 1.00743 0.96935 1.00209 1.22599 0.90375 0.99375 0.94758 1.67540 1.19435 1.08236 1.21481 1.19483 0.77127 0.85847 0.84360 1.90727 1.46007 1.16907 1.86564 1.22439 1.02360 1.03603 0.90013 0.84330 1.23067 0.94533 0.99291 1.02317 1.21077 1.02449 0.89999 0.97659 0.86706 1.18825 0.94497 0.92596 0.97600 1.20635 0.94884 0.96281 0.94421 1.20862 1.00029 0.92986 1.00935 1.20918 0.95704 0.98297 0.99348 1.20861 0.96862 0.96205 1.01209 1.20764 0.99059 0.92481 1.00787 0.92509 0.94486 0.95541 0.89261 0.89775 0.84963 0.85481 0.85725 0.83773 0.88372 0.87833 0.87266 0.87198 0.87241 0.87076 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 13.96 55.43 0.77 -24.46 16 2 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 19.15 27.47 -169.99 -4.67 14.48 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 7 C -0.53 -13.45 9.48 -34.44 -0.33 -13.77 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 9 C 0.21 4.38 3.91 -5.19 -0.02 4.36 16 10 N -0.59 -11.71 2.44 -176.43 -0.43 -12.14 16 11 C 0.17 3.17 5.76 -5.20 -0.03 3.14 16 12 C 0.12 2.33 6.36 -82.59 -0.53 1.81 16 13 C -0.13 -2.35 9.57 -39.44 -0.38 -2.73 16 14 C -0.08 -1.33 10.18 -39.28 -0.40 -1.73 16 15 C -0.18 -2.84 10.11 -39.44 -0.40 -3.24 16 16 C 0.09 1.51 11.18 -17.55 -0.20 1.31 16 17 N -0.46 -9.23 10.27 -9.47 -0.10 -9.33 16 18 C 0.54 10.91 7.31 -10.98 -0.08 10.83 16 19 O -0.52 -11.09 11.25 5.56 0.06 -11.02 16 20 C -0.16 -2.93 4.80 -91.77 -0.44 -3.37 16 21 H 0.14 2.72 7.00 -51.93 -0.36 2.36 16 22 C -0.15 -2.21 9.58 -26.72 -0.26 -2.47 16 23 C -0.09 -1.46 6.04 -91.76 -0.55 -2.02 16 24 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 25 C -0.04 -0.58 4.38 -104.62 -0.46 -1.04 16 26 C -0.04 -0.72 6.16 -39.59 -0.24 -0.97 16 27 C -0.13 -2.00 10.05 -39.59 -0.40 -2.39 16 28 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 29 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 30 C -0.11 -1.80 9.74 -39.58 -0.39 -2.19 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.04 0.77 5.70 -51.93 -0.30 0.48 16 33 H 0.03 0.54 7.32 -51.93 -0.38 0.16 16 34 H 0.09 1.62 7.42 -51.93 -0.39 1.24 16 35 H 0.08 1.30 7.79 -51.93 -0.40 0.90 16 36 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 37 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.14 2.14 8.06 -52.49 -0.42 1.71 16 40 H 0.10 1.35 6.19 -51.93 -0.32 1.03 16 41 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.11 1.74 5.76 -52.48 -0.30 1.44 16 43 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 44 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 45 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -31.21 380.60 -10.88 -42.09 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.27 Total: 11.80 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -5.98 Total: -17.16 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.25 Total: -45.92 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.06 Total: -11.02 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.67 Total: 14.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.21 -10.88 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069490545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.471 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds