Wall clock time and date at job start Tue Mar 31 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48502 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46846 * 299.99862 * 3 2 1 6 6 H 1.48495 * 109.47267 * 59.99813 * 3 2 1 7 7 C 1.37878 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99878 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99808 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46879 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99951 * 275.78195 * 10 9 7 12 12 C 1.50693 * 109.47214 * 270.00248 * 11 10 9 13 13 C 1.38685 * 120.41929 * 269.72231 * 12 11 10 14 14 C 1.38624 * 118.41964 * 179.78320 * 13 12 11 15 15 C 1.38218 * 119.16487 * 0.50992 * 14 13 12 16 16 N 1.31856 * 120.76458 * 359.72579 * 15 14 13 17 17 C 1.31891 * 121.72275 * 0.02562 * 16 15 14 18 18 C 1.34773 * 120.00341 * 95.78035 * 10 9 7 19 19 O 1.21545 * 120.00383 * 184.99056 * 18 10 9 20 20 C 1.47846 * 119.99519 * 4.99235 * 18 10 9 21 21 C 1.39594 * 120.18940 * 311.80064 * 20 18 10 22 22 C 1.37804 * 119.78855 * 179.97438 * 21 20 18 23 23 C 1.38672 * 120.40822 * 359.97438 * 22 21 20 24 24 C 1.38375 * 120.07996 * 0.02562 * 23 22 21 25 25 C 1.38228 * 119.99530 * 359.97349 * 24 23 22 26 26 C 1.51398 * 109.73644 * 179.97438 * 24 23 22 27 27 C 1.54324 * 105.17569 * 342.78045 * 26 24 23 28 28 C 1.51727 * 130.13198 * 179.82934 * 23 22 21 29 29 H 0.96998 * 119.99522 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46896 * 60.00433 * 9 7 2 31 31 H 1.08994 * 109.47288 * 299.99639 * 9 7 2 32 32 H 1.09006 * 109.47283 * 29.99744 * 11 10 9 33 33 H 1.08997 * 109.47294 * 150.00245 * 11 10 9 34 34 H 1.07999 * 120.78473 * 0.02562 * 13 12 11 35 35 H 1.08005 * 120.41359 * 180.22166 * 14 13 12 36 36 H 1.07997 * 119.62060 * 179.75246 * 15 14 13 37 37 H 1.08004 * 119.61660 * 180.02562 * 17 16 15 38 38 H 1.08004 * 120.10370 * 0.02562 * 21 20 18 39 39 H 1.08003 * 119.79330 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.94740 * 179.97438 * 25 24 23 41 41 H 1.09003 * 110.29888 * 223.85603 * 26 24 23 42 42 H 1.08999 * 110.38428 * 101.75585 * 26 24 23 43 43 H 1.09003 * 110.81662 * 144.64330 * 27 26 24 44 44 H 1.09001 * 110.82122 * 267.98305 * 27 26 24 45 45 H 1.08992 * 110.25683 * 78.31623 * 28 23 22 46 46 H 1.09007 * 110.49388 * 316.07460 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.7762 -4.0875 -1.2592 12 6 1.8983 -5.1690 -1.8342 13 6 2.1200 -6.4993 -1.5110 14 6 1.2846 -7.4597 -2.0599 15 6 0.2722 -7.0634 -2.9135 16 7 0.0937 -5.7893 -3.2025 17 6 0.8660 -4.8483 -2.6949 18 6 2.5516 -4.2003 1.1644 19 8 3.4083 -5.0624 1.1764 20 6 1.8919 -3.7962 2.4243 21 6 1.7619 -2.4441 2.7462 22 6 1.1450 -2.0767 3.9224 23 6 0.6522 -3.0417 4.7878 24 6 0.7780 -4.3836 4.4744 25 6 1.3950 -4.7634 3.2972 26 6 0.1648 -5.2250 5.5735 27 6 0.0458 -4.2795 6.7874 28 6 -0.0524 -2.8899 6.1229 29 1 -0.4849 0.8401 0.0004 30 1 0.6241 -2.5575 -0.8880 31 1 0.6248 -2.5563 0.8919 32 1 2.8401 -3.2585 -1.9640 33 1 3.7736 -4.4877 -1.0774 34 1 2.9220 -6.7799 -0.8444 35 1 1.4259 -8.5049 -1.8272 36 1 -0.3804 -7.8058 -3.3485 37 1 0.6890 -3.8150 -2.9545 38 1 2.1428 -1.6884 2.0752 39 1 1.0440 -1.0306 4.1714 40 1 1.4931 -5.8110 3.0535 41 1 0.8145 -6.0671 5.8122 42 1 -0.8206 -5.5816 5.2737 43 1 -0.8541 -4.4984 7.3621 44 1 0.9321 -4.3458 7.4185 45 1 -1.0963 -2.6163 5.9698 46 1 0.4494 -2.1415 6.7364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069516001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:49 Heat of formation + Delta-G solvation = 20.824737 kcal Electronic energy + Delta-G solvation = -28757.298830 eV Core-core repulsion = 24997.171476 eV Total energy + Delta-G solvation = -3760.127354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.24433 -39.77460 -38.61573 -35.35012 -35.17067 -33.08993 -32.15142 -31.35822 -31.05580 -28.97679 -27.61697 -27.12803 -25.95166 -23.47042 -23.10736 -22.67278 -21.78517 -20.94351 -20.60920 -18.53442 -16.98364 -16.68399 -16.44606 -15.90035 -15.88046 -15.49381 -15.39701 -15.04763 -14.56050 -14.50291 -14.04455 -13.74611 -13.31994 -13.06460 -12.92629 -12.78053 -12.76057 -12.67380 -12.34478 -12.19802 -11.82017 -11.78609 -11.58439 -11.21203 -11.13926 -11.11897 -10.96441 -10.83942 -10.62339 -10.34544 -10.22618 -9.87269 -9.60802 -9.27069 -9.23592 -8.75919 -8.66507 -8.36508 -7.99051 -7.84713 -6.27981 -4.36439 1.30039 1.50716 1.52237 1.88607 3.15363 3.25274 3.27760 3.34380 3.73710 4.16814 4.21421 4.31607 4.62105 4.67252 4.70777 5.01878 5.02106 5.02767 5.16196 5.18455 5.26316 5.32328 5.40167 5.43993 5.50443 5.64833 5.76426 5.77858 5.85256 5.85583 5.88649 6.01466 6.07994 6.14920 6.16963 6.21504 6.34367 6.42608 6.53714 6.57088 6.65879 6.87927 6.93583 7.01825 7.05390 7.16033 7.41342 7.47548 7.65787 7.94562 8.18551 8.20705 8.68311 8.87772 9.30451 10.77582 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.007350 B = 0.005207 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3808.512200 B = 5376.519678 C = 8186.797364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.071 3.929 3 Si 0.892 3.108 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.229 3.771 10 N -0.584 5.584 11 C 0.160 3.840 12 C -0.145 4.145 13 C -0.058 4.058 14 C -0.181 4.181 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.116 3.884 18 C 0.563 3.437 19 O -0.568 6.568 20 C -0.123 4.123 21 C -0.065 4.065 22 C -0.117 4.117 23 C -0.085 4.085 24 C -0.123 4.123 25 C -0.063 4.063 26 C -0.076 4.076 27 C -0.120 4.120 28 C -0.082 4.082 29 H 0.266 0.734 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 -9.076 5.591 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.110 3.890 10 N -0.313 5.313 11 C 0.036 3.964 12 C -0.148 4.148 13 C -0.084 4.084 14 C -0.201 4.201 15 C -0.068 4.068 16 N -0.197 5.197 17 C -0.041 4.041 18 C 0.352 3.648 19 O -0.450 6.450 20 C -0.126 4.126 21 C -0.083 4.083 22 C -0.135 4.135 23 C -0.085 4.085 24 C -0.123 4.123 25 C -0.082 4.082 26 C -0.113 4.113 27 C -0.157 4.157 28 C -0.119 4.119 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.188 0.812 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.663 -9.130 5.003 10.432 hybrid contribution 0.887 0.794 0.465 1.278 sum 0.224 -8.336 5.468 9.972 Atomic orbital electron populations 1.69945 1.05987 1.27399 1.48274 1.24946 0.94811 0.99198 0.94471 0.86527 0.80281 0.83334 0.77966 1.19484 1.20719 1.20679 1.21464 0.93759 0.90307 1.52702 0.91674 1.19699 0.87712 0.82268 0.99346 1.48153 1.44967 1.34045 1.04089 1.20143 0.95270 0.94668 0.86301 1.21434 0.99041 0.95788 0.98540 1.21660 0.98164 0.92367 0.96254 1.22094 0.97589 1.00521 0.99902 1.22693 0.95867 0.93067 0.95134 1.67711 1.26893 1.01435 1.23707 1.22821 0.89884 0.99034 0.92391 1.18329 0.81819 0.80785 0.83833 1.90651 1.33125 1.33994 1.87182 1.19706 1.03000 0.94370 0.95549 1.22330 0.94174 0.96126 0.95625 1.20607 0.99860 0.98817 0.94237 1.20784 0.97803 0.93795 0.96165 1.20281 1.01192 0.94917 0.95894 1.20427 0.96739 0.98648 0.92416 1.20960 1.00328 0.97453 0.92581 1.22270 1.01950 0.94523 0.96957 1.21112 1.00196 0.97717 0.92887 0.92369 0.94755 0.93247 0.88752 0.89632 0.84552 0.85259 0.83292 0.82442 0.81210 0.86187 0.86529 0.91141 0.90667 0.90905 0.91169 0.90321 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.92 13.29 55.43 0.74 -22.19 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 19.39 29.54 -169.99 -5.02 14.37 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -13.08 6.85 -34.44 -0.24 -13.32 16 8 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.23 5.22 4.67 -5.19 -0.02 5.19 16 10 N -0.58 -11.96 2.44 -177.55 -0.43 -12.39 16 11 C 0.16 2.84 5.62 -5.20 -0.03 2.81 16 12 C -0.14 -2.41 5.48 -104.48 -0.57 -2.98 16 13 C -0.06 -0.89 9.86 -39.27 -0.39 -1.28 16 14 C -0.18 -2.41 10.11 -39.45 -0.40 -2.81 16 15 C 0.09 1.24 11.18 -17.55 -0.20 1.05 16 16 N -0.49 -8.10 10.36 -13.25 -0.14 -8.23 16 17 C 0.12 1.95 10.86 -17.55 -0.19 1.76 16 18 C 0.56 11.91 7.24 -12.33 -0.09 11.82 16 19 O -0.57 -12.59 16.47 5.33 0.09 -12.51 16 20 C -0.12 -2.49 4.95 -105.01 -0.52 -3.01 16 21 C -0.06 -1.31 7.52 -39.23 -0.30 -1.60 16 22 C -0.12 -2.10 10.02 -39.58 -0.40 -2.50 16 23 C -0.09 -1.36 6.15 -103.91 -0.64 -2.00 16 24 C -0.12 -1.96 6.13 -104.23 -0.64 -2.60 16 25 C -0.06 -1.14 9.71 -39.14 -0.38 -1.52 16 26 C -0.08 -0.92 6.77 -26.85 -0.18 -1.10 16 27 C -0.12 -1.24 7.07 -25.33 -0.18 -1.42 16 28 C -0.08 -1.00 6.80 -26.67 -0.18 -1.18 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.03 0.83 8.11 -51.93 -0.42 0.40 16 31 H 0.05 1.21 5.39 -51.93 -0.28 0.93 16 32 H 0.09 1.61 8.02 -51.93 -0.42 1.19 16 33 H 0.09 1.50 7.31 -51.93 -0.38 1.12 16 34 H 0.14 2.10 7.96 -52.49 -0.42 1.68 16 35 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.16 2.59 8.06 -52.48 -0.42 2.17 16 38 H 0.17 3.76 4.74 -52.48 -0.25 3.51 16 39 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 40 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -28.39 382.67 -10.99 -39.39 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.36 Total: 8.83 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -5.63 Total: -13.04 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.17 Total: -42.81 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.39 -10.99 -39.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069516001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.211 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds