Wall clock time and date at job start Tue Mar 31 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48502 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46846 * 299.99862 * 3 2 1 6 6 H 1.48495 * 109.47267 * 59.99813 * 3 2 1 7 7 C 1.37878 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99878 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99808 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46879 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99951 * 275.78195 * 10 9 7 12 12 C 1.50693 * 109.47214 * 270.00248 * 11 10 9 13 13 C 1.38685 * 120.41929 * 269.72231 * 12 11 10 14 14 C 1.38624 * 118.41964 * 179.78320 * 13 12 11 15 15 C 1.38218 * 119.16487 * 0.50992 * 14 13 12 16 16 N 1.31856 * 120.76458 * 359.72579 * 15 14 13 17 17 C 1.31891 * 121.72275 * 0.02562 * 16 15 14 18 18 C 1.34773 * 120.00341 * 95.78035 * 10 9 7 19 19 O 1.21545 * 120.00383 * 184.99056 * 18 10 9 20 20 C 1.47846 * 119.99519 * 4.99235 * 18 10 9 21 21 C 1.39594 * 120.18940 * 311.80064 * 20 18 10 22 22 C 1.37804 * 119.78855 * 179.97438 * 21 20 18 23 23 C 1.38672 * 120.40822 * 359.97438 * 22 21 20 24 24 C 1.38375 * 120.07996 * 0.02562 * 23 22 21 25 25 C 1.38228 * 119.99530 * 359.97349 * 24 23 22 26 26 C 1.51398 * 109.73644 * 179.97438 * 24 23 22 27 27 C 1.54324 * 105.17569 * 342.78045 * 26 24 23 28 28 C 1.51727 * 130.13198 * 179.82934 * 23 22 21 29 29 H 0.96998 * 119.99522 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46896 * 60.00433 * 9 7 2 31 31 H 1.08994 * 109.47288 * 299.99639 * 9 7 2 32 32 H 1.09006 * 109.47283 * 29.99744 * 11 10 9 33 33 H 1.08997 * 109.47294 * 150.00245 * 11 10 9 34 34 H 1.07999 * 120.78473 * 0.02562 * 13 12 11 35 35 H 1.08005 * 120.41359 * 180.22166 * 14 13 12 36 36 H 1.07997 * 119.62060 * 179.75246 * 15 14 13 37 37 H 1.08004 * 119.61660 * 180.02562 * 17 16 15 38 38 H 1.08004 * 120.10370 * 0.02562 * 21 20 18 39 39 H 1.08003 * 119.79330 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.94740 * 179.97438 * 25 24 23 41 41 H 1.09003 * 110.29888 * 223.85603 * 26 24 23 42 42 H 1.08999 * 110.38428 * 101.75585 * 26 24 23 43 43 H 1.09003 * 110.81662 * 144.64330 * 27 26 24 44 44 H 1.09001 * 110.82122 * 267.98305 * 27 26 24 45 45 H 1.08992 * 110.25683 * 78.31623 * 28 23 22 46 46 H 1.09007 * 110.49388 * 316.07460 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.7762 -4.0875 -1.2592 12 6 1.8983 -5.1690 -1.8342 13 6 2.1200 -6.4993 -1.5110 14 6 1.2846 -7.4597 -2.0599 15 6 0.2722 -7.0634 -2.9135 16 7 0.0937 -5.7893 -3.2025 17 6 0.8660 -4.8483 -2.6949 18 6 2.5516 -4.2003 1.1644 19 8 3.4083 -5.0624 1.1764 20 6 1.8919 -3.7962 2.4243 21 6 1.7619 -2.4441 2.7462 22 6 1.1450 -2.0767 3.9224 23 6 0.6522 -3.0417 4.7878 24 6 0.7780 -4.3836 4.4744 25 6 1.3950 -4.7634 3.2972 26 6 0.1648 -5.2250 5.5735 27 6 0.0458 -4.2795 6.7874 28 6 -0.0524 -2.8899 6.1229 29 1 -0.4849 0.8401 0.0004 30 1 0.6241 -2.5575 -0.8880 31 1 0.6248 -2.5563 0.8919 32 1 2.8401 -3.2585 -1.9640 33 1 3.7736 -4.4877 -1.0774 34 1 2.9220 -6.7799 -0.8444 35 1 1.4259 -8.5049 -1.8272 36 1 -0.3804 -7.8058 -3.3485 37 1 0.6890 -3.8150 -2.9545 38 1 2.1428 -1.6884 2.0752 39 1 1.0440 -1.0306 4.1714 40 1 1.4931 -5.8110 3.0535 41 1 0.8145 -6.0671 5.8122 42 1 -0.8206 -5.5816 5.2737 43 1 -0.8541 -4.4984 7.3621 44 1 0.9321 -4.3458 7.4185 45 1 -1.0963 -2.6163 5.9698 46 1 0.4494 -2.1415 6.7364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069516001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:48 Heat of formation + Delta-G solvation = 8.291009 kcal Electronic energy + Delta-G solvation = -28757.842333 eV Core-core repulsion = 24997.171476 eV Total energy + Delta-G solvation = -3760.670857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66614 -41.01566 -40.03850 -37.03034 -36.40638 -34.82578 -33.58101 -32.63183 -32.37250 -30.23510 -29.39088 -28.29269 -27.35673 -25.11532 -24.43612 -24.05862 -23.08624 -22.32338 -21.64123 -20.08227 -18.68016 -18.14064 -17.89674 -17.47326 -17.16440 -16.78498 -16.60814 -16.34295 -16.25232 -15.83318 -15.44525 -15.17926 -14.62377 -14.44375 -14.35569 -14.25782 -14.02780 -13.91197 -13.69559 -13.53366 -13.30720 -13.26654 -12.83704 -12.75547 -12.68676 -12.51799 -12.33046 -12.01802 -12.00552 -11.77518 -11.73021 -11.55481 -11.01519 -10.74278 -10.59276 -10.48778 -10.00119 -9.78058 -9.55308 -9.32857 -8.21150 -6.34916 0.07629 0.09978 0.30002 0.48854 1.39708 1.44339 1.53637 1.73598 2.21303 2.41536 2.83456 2.91994 3.08120 3.46921 3.51909 3.66607 3.72291 3.85271 3.93214 4.06175 4.07077 4.09208 4.22734 4.26270 4.39714 4.43764 4.57564 4.64909 4.69695 4.71227 4.80805 4.84174 4.85599 4.92367 4.97913 5.10568 5.15736 5.17003 5.21661 5.29055 5.34237 5.37949 5.51332 5.55410 5.63060 5.66732 5.74803 5.76162 6.01682 6.07162 6.46221 6.76962 6.98442 7.17759 7.35855 8.84463 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.007350 B = 0.005207 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3808.512200 B = 5376.519678 C = 8186.797364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.032 3.968 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.250 3.750 10 N -0.584 5.584 11 C 0.160 3.840 12 C -0.156 4.156 13 C -0.067 4.067 14 C -0.168 4.168 15 C 0.090 3.910 16 N -0.510 5.510 17 C 0.101 3.899 18 C 0.560 3.440 19 O -0.584 6.584 20 C -0.149 4.149 21 C -0.085 4.085 22 C -0.129 4.129 23 C -0.085 4.085 24 C -0.122 4.122 25 C -0.073 4.073 26 C -0.076 4.076 27 C -0.110 4.110 28 C -0.082 4.082 29 H 0.268 0.732 30 H 0.016 0.984 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.168 0.832 36 H 0.188 0.812 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.070 -10.644 7.452 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.169 4.169 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.075 0.925 9 C 0.129 3.871 10 N -0.312 5.312 11 C 0.037 3.963 12 C -0.159 4.159 13 C -0.093 4.093 14 C -0.187 4.187 15 C -0.067 4.067 16 N -0.219 5.219 17 C -0.055 4.055 18 C 0.349 3.651 19 O -0.467 6.467 20 C -0.152 4.152 21 C -0.103 4.103 22 C -0.147 4.147 23 C -0.085 4.085 24 C -0.122 4.122 25 C -0.092 4.092 26 C -0.113 4.113 27 C -0.148 4.148 28 C -0.119 4.119 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.152 0.848 35 H 0.186 0.814 36 H 0.205 0.795 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.477 -10.697 6.854 12.790 hybrid contribution 1.119 1.174 -0.091 1.625 sum -0.357 -9.523 6.763 11.685 Atomic orbital electron populations 1.70035 1.07195 1.28119 1.49448 1.25553 0.95385 1.01864 0.94141 0.85629 0.79041 0.79871 0.77950 1.19442 1.20514 1.20183 1.21520 0.93274 0.91062 1.52114 0.92543 1.19278 0.87593 0.82710 0.97489 1.48127 1.44507 1.33508 1.05106 1.20204 0.95544 0.95258 0.85276 1.21254 0.99275 0.96090 0.99324 1.21771 0.98768 0.92256 0.96546 1.22471 0.96053 1.01892 0.98266 1.23367 0.96147 0.92657 0.94511 1.67722 1.27163 1.02632 1.24361 1.22708 0.90501 0.99091 0.93200 1.18583 0.81649 0.80515 0.84314 1.90614 1.33825 1.34770 1.87503 1.19756 1.04647 0.94939 0.95845 1.22068 0.96017 0.95631 0.96618 1.20758 0.99962 0.99923 0.94059 1.21297 0.96545 0.93309 0.97377 1.20827 0.99633 0.96019 0.95758 1.20590 0.97102 0.98452 0.93082 1.21112 1.00807 0.97719 0.91692 1.22311 1.03915 0.92270 0.96260 1.21262 1.00291 0.99657 0.90709 0.92266 0.96550 0.94960 0.88836 0.89565 0.84757 0.81429 0.79531 0.83421 0.83843 0.85422 0.86001 0.89714 0.89381 0.88019 0.90204 0.89234 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.90 13.29 21.45 0.28 -48.61 16 2 C 0.03 1.65 5.46 84.65 0.46 2.11 16 3 Si 0.95 40.65 29.54 68.60 2.03 42.68 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -27.29 6.85 25.60 0.18 -27.11 16 8 H 0.06 2.90 7.81 -2.91 -0.02 2.87 16 9 C 0.25 12.07 4.67 85.63 0.40 12.47 16 10 N -0.58 -25.31 2.44 -833.93 -2.04 -27.35 16 11 C 0.16 6.02 5.62 85.63 0.48 6.50 16 12 C -0.16 -5.38 5.48 -19.77 -0.11 -5.49 16 13 C -0.07 -2.03 9.86 22.47 0.22 -1.81 16 14 C -0.17 -4.07 10.11 22.36 0.23 -3.85 16 15 C 0.09 2.31 11.18 84.68 0.95 3.26 16 16 N -0.51 -16.73 10.36 -195.85 -2.03 -18.76 16 17 C 0.10 3.54 10.86 84.67 0.92 4.46 16 18 C 0.56 24.77 7.24 86.79 0.63 25.40 16 19 O -0.58 -26.79 16.47 -3.86 -0.06 -26.85 16 20 C -0.15 -6.27 4.95 -20.12 -0.10 -6.37 16 21 C -0.09 -3.61 7.52 22.49 0.17 -3.44 16 22 C -0.13 -4.71 10.02 22.27 0.22 -4.48 16 23 C -0.09 -2.61 6.15 -19.40 -0.12 -2.73 16 24 C -0.12 -3.74 6.13 -19.61 -0.12 -3.86 16 25 C -0.07 -2.67 9.71 22.56 0.22 -2.45 16 26 C -0.08 -1.59 6.77 30.52 0.21 -1.38 16 27 C -0.11 -1.80 7.07 31.50 0.22 -1.58 16 28 C -0.08 -1.73 6.80 30.63 0.21 -1.52 16 29 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.02 0.84 8.11 -2.39 -0.02 0.83 16 31 H 0.03 1.69 5.39 -2.39 -0.01 1.67 16 32 H 0.09 3.43 8.02 -2.38 -0.02 3.41 16 33 H 0.09 3.18 7.31 -2.39 -0.02 3.16 16 34 H 0.13 4.13 7.96 -2.91 -0.02 4.10 16 35 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.15 5.26 8.06 -2.91 -0.02 5.24 16 38 H 0.14 6.78 4.74 -2.91 -0.01 6.77 16 39 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 40 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -63.72 382.67 4.43 -59.29 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.99 Total: 31.47 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 5.26 Total: -11.87 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -3.78 Total: -94.72 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.06 Total: -26.85 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -63.72 4.43 -59.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069516001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.582 kcal (2) G-P(sol) polarization free energy of solvation -63.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds