Wall clock time and date at job start Tue Mar 31 2020 04:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 120.00095 * 2 1 4 4 C 1.38214 * 119.99683 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00217 * 359.97048 * 4 3 2 6 6 C 1.38221 * 120.00113 * 0.02562 * 5 4 3 7 7 C 1.38216 * 119.99723 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.00023 * 0.02562 * 7 2 1 9 9 H 1.09006 * 110.88727 * 359.29262 * 8 7 2 10 10 C 1.55154 * 111.00479 * 123.17636 * 8 7 2 11 11 C 1.54327 * 102.94253 * 153.57815 * 10 8 7 12 12 N 1.47023 * 107.26697 * 337.80470 * 11 10 8 13 13 C 1.34779 * 125.64553 * 178.99641 * 12 11 10 14 14 O 1.21543 * 120.00065 * 174.87210 * 13 12 11 15 15 C 1.47888 * 119.99846 * 354.86641 * 13 12 11 16 16 C 1.39924 * 120.02219 * 188.15206 * 15 13 12 17 17 C 1.38335 * 120.35582 * 179.97438 * 16 15 13 18 18 C 1.37751 * 120.41351 * 0.02562 * 17 16 15 19 19 C 1.40755 * 120.03846 * 0.02562 * 18 17 16 20 20 C 1.41433 * 120.17495 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99818 * 214.78762 * 20 19 18 22 22 C 1.39933 * 120.00589 * 34.78779 * 20 19 18 23 23 N 1.30830 * 119.99562 * 355.51828 * 22 20 19 24 24 Si 1.86801 * 120.00377 * 175.51891 * 22 20 19 25 25 H 1.48498 * 109.47217 * 94.99788 * 24 22 20 26 26 H 1.48506 * 109.46842 * 215.00151 * 24 22 20 27 27 H 1.48499 * 109.46791 * 334.99540 * 24 22 20 28 28 C 1.38996 * 120.02821 * 7.88089 * 15 13 12 29 29 C 1.47467 * 108.72838 * 358.97798 * 12 11 10 30 30 H 1.09001 * 109.47691 * 89.99832 * 1 2 3 31 31 H 1.08998 * 109.47378 * 210.00639 * 1 2 3 32 32 H 1.09009 * 109.46820 * 330.00180 * 1 2 3 33 33 H 1.07999 * 120.00086 * 0.27876 * 3 2 1 34 34 H 1.08005 * 119.99815 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.00486 * 180.02562 * 5 4 3 36 36 H 1.07992 * 120.00107 * 179.97438 * 6 5 4 37 37 H 1.09004 * 110.71854 * 271.93974 * 10 8 7 38 38 H 1.09000 * 110.71790 * 35.21477 * 10 8 7 39 39 H 1.08994 * 109.88324 * 97.22463 * 11 10 8 40 40 H 1.09002 * 109.88188 * 218.39399 * 11 10 8 41 41 H 1.07995 * 119.82293 * 0.02562 * 16 15 13 42 42 H 1.08001 * 119.79009 * 180.02562 * 17 16 15 43 43 H 1.07998 * 119.98464 * 179.97438 * 18 17 16 44 44 H 0.97002 * 119.99898 * 180.02562 * 23 22 20 45 45 H 1.07999 * 120.19630 * 0.02562 * 28 15 13 46 46 H 1.08992 * 110.34902 * 265.25071 * 29 12 11 47 47 H 1.08999 * 110.40631 * 142.90975 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2716 -0.0001 -0.0005 6 6 3.5805 -1.1971 -0.0004 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5021 0.0005 9 1 0.3682 -2.3294 0.0127 10 6 1.8532 -3.3803 -1.2114 11 6 1.5715 -4.8128 -0.7110 12 7 1.5804 -4.7712 0.7586 13 6 1.3549 -5.8193 1.5754 14 8 1.4788 -5.6906 2.7776 15 6 0.9567 -7.1260 1.0088 16 6 0.5577 -8.1647 1.8572 17 6 0.1833 -9.3896 1.3346 18 6 0.1994 -9.6013 -0.0264 19 6 0.5989 -8.5687 -0.8955 20 6 0.6170 -8.7831 -2.2934 21 1 1.3758 -8.3137 -2.9019 22 6 -0.3481 -9.6035 -2.8881 23 7 -1.2132 -10.2419 -2.1426 24 14 -0.4013 -9.7872 -4.7463 25 1 0.3614 -10.9970 -5.1461 26 1 -1.8120 -9.9222 -5.1901 27 1 0.2043 -8.5884 -5.3796 28 6 0.9732 -7.3216 -0.3672 29 6 1.8772 -3.3931 1.1916 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5139 33 1 1.6583 2.1326 0.0046 34 1 4.1205 2.1326 -0.0010 35 1 5.3516 -0.0002 -0.0005 36 1 4.1205 -2.1324 -0.0007 37 1 1.2384 -3.1478 -2.0810 38 1 2.9112 -3.2529 -1.4405 39 1 0.5961 -5.1446 -1.0666 40 1 2.3483 -5.4894 -1.0673 41 1 0.5411 -8.0090 2.9258 42 1 -0.1236 -10.1848 1.9979 43 1 -0.0939 -10.5605 -0.4269 44 1 -1.8820 -10.8109 -2.5547 45 1 1.2767 -6.5214 -1.0260 46 1 2.9438 -3.2777 1.3838 47 1 1.3010 -3.1421 2.0821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069519533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:39 Heat of formation + Delta-G solvation = 24.688597 kcal Electronic energy + Delta-G solvation = -27921.124010 eV Core-core repulsion = 24226.590117 eV Total energy + Delta-G solvation = -3694.533893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.163 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.45040 -39.31295 -37.34680 -36.74433 -33.63391 -33.40745 -32.57713 -30.25478 -30.08849 -29.72484 -28.08489 -26.92911 -25.30820 -24.44042 -23.08914 -21.61637 -21.40495 -20.70428 -20.03815 -19.29744 -17.32024 -17.03054 -16.19125 -15.86612 -15.42860 -15.33711 -14.95863 -14.75795 -14.70409 -14.02206 -13.86927 -13.48093 -13.35150 -13.28124 -13.11860 -12.95544 -12.63628 -12.51205 -12.50260 -12.27744 -12.19611 -11.70746 -11.54563 -11.37771 -11.32061 -11.24278 -11.07080 -10.86420 -10.55732 -10.47603 -10.42098 -10.12380 -9.45708 -9.24118 -9.11158 -8.92273 -8.69942 -8.32246 -7.65347 -7.37719 -6.68301 -4.48903 1.15777 1.21148 2.17628 2.72878 3.05418 3.06614 3.13133 3.35338 3.53975 3.80262 3.93017 4.45423 4.54975 4.64547 4.66398 4.74449 4.75371 4.92390 5.04741 5.09390 5.24765 5.31946 5.43037 5.47124 5.47789 5.50201 5.54910 5.62600 5.73997 5.87131 5.90948 5.92563 5.99623 6.02076 6.13970 6.18060 6.32315 6.34258 6.39950 6.52481 6.58010 6.77290 6.83907 6.93136 7.01055 7.22667 7.38959 7.61366 7.83536 7.93624 7.99476 8.13081 8.52275 8.76458 8.83415 8.85415 10.23831 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.002866 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.213834 B = 9767.121054 C =11046.985655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.124 4.124 6 C -0.109 4.109 7 C -0.067 4.067 8 C -0.071 4.071 9 H 0.099 0.901 10 C -0.126 4.126 11 C 0.096 3.904 12 N -0.619 5.619 13 C 0.581 3.419 14 O -0.557 6.557 15 C -0.126 4.126 16 C -0.161 4.161 17 C -0.125 4.125 18 C -0.124 4.124 19 C 0.092 3.908 20 C -0.468 4.468 21 H 0.076 0.924 22 C 0.071 3.929 23 N -0.815 5.815 24 Si 0.914 3.086 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.208 4.208 29 C 0.118 3.882 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.278 0.722 45 H 0.134 0.866 46 H 0.065 0.935 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 18.034 -1.153 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.142 4.142 6 C -0.127 4.127 7 C -0.067 4.067 8 C -0.090 4.090 9 H 0.117 0.883 10 C -0.164 4.164 11 C -0.027 4.027 12 N -0.353 5.353 13 C 0.374 3.626 14 O -0.437 6.437 15 C -0.129 4.129 16 C -0.182 4.182 17 C -0.143 4.143 18 C -0.144 4.144 19 C 0.090 3.910 20 C -0.499 4.499 21 H 0.094 0.906 22 C -0.144 4.144 23 N -0.443 5.443 24 Si 0.739 3.261 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.227 4.227 29 C -0.004 4.004 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.151 0.849 46 H 0.084 0.916 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.713 17.859 -0.488 18.477 hybrid contribution -0.125 -0.135 -0.854 0.873 sum 4.589 17.724 -1.342 18.357 Atomic orbital electron populations 1.20898 0.91266 1.03009 1.02574 1.19780 0.96068 0.92524 0.99590 1.20995 0.94268 0.97316 1.01293 1.21110 0.94310 0.97996 1.00574 1.21111 0.99832 0.92464 1.00814 1.21041 0.93646 0.98304 0.99717 1.19462 0.93471 0.93532 1.00282 1.21463 1.00496 0.91217 0.95780 0.88322 1.22884 1.02471 0.93603 0.97459 1.22608 1.03137 0.96353 0.80560 1.48319 1.71760 1.08459 1.06807 1.18608 0.75352 0.83474 0.85148 1.90664 1.53588 1.84433 1.14969 1.19260 1.06907 0.92165 0.94538 1.20554 1.06411 0.93488 0.97702 1.20782 1.01729 0.95941 0.95854 1.21896 1.00903 1.00325 0.91263 1.17635 0.89943 0.89738 0.93658 1.19454 1.12234 1.25953 0.92240 0.90560 1.25840 0.94560 0.93370 1.00604 1.69724 1.14485 1.22982 1.37077 0.86201 0.78210 0.79503 0.82178 1.19634 1.20289 1.18659 1.22629 1.08227 0.98646 0.93219 1.22183 1.00490 0.80926 0.96830 0.90964 0.90872 0.91589 0.86220 0.86299 0.86171 0.85845 0.89701 0.90401 0.89400 0.89923 0.88054 0.88547 0.85009 0.91080 0.84860 0.91637 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.41 36.00 0.34 -0.65 16 2 C -0.08 -0.78 5.88 -104.62 -0.62 -1.40 16 3 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 4 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 5 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 6 C -0.11 -1.11 8.28 -39.58 -0.33 -1.44 16 7 C -0.07 -0.71 5.00 -104.62 -0.52 -1.23 16 8 C -0.07 -0.79 3.02 -89.62 -0.27 -1.06 16 9 H 0.10 1.08 5.60 -51.93 -0.29 0.79 16 10 C -0.13 -1.40 6.36 -24.90 -0.16 -1.55 16 11 C 0.10 1.39 4.87 -3.06 -0.01 1.38 16 12 N -0.62 -10.58 3.33 -175.64 -0.58 -11.17 16 13 C 0.58 12.42 7.81 -12.31 -0.10 12.32 16 14 O -0.56 -13.22 16.66 5.33 0.09 -13.13 16 15 C -0.13 -2.88 5.87 -105.03 -0.62 -3.49 16 16 C -0.16 -3.77 9.60 -38.92 -0.37 -4.14 16 17 C -0.12 -2.90 10.01 -39.72 -0.40 -3.30 16 18 C -0.12 -3.12 8.67 -38.81 -0.34 -3.46 16 19 C 0.09 2.32 5.55 -106.87 -0.59 1.73 16 20 C -0.47 -11.65 9.04 -37.73 -0.34 -11.99 16 21 H 0.08 1.80 7.85 -52.48 -0.41 1.38 16 22 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 23 N -0.82 -20.44 10.60 55.55 0.59 -19.85 16 24 Si 0.91 18.09 29.56 -169.99 -5.03 13.06 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 27 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 28 C -0.21 -4.73 8.34 -38.44 -0.32 -5.05 16 29 C 0.12 1.67 6.31 -2.50 -0.02 1.66 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.63 6.09 -51.93 -0.32 0.31 16 32 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 1.19 7.02 -52.49 -0.37 0.82 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.79 6.97 -51.93 -0.36 0.43 16 39 H 0.09 1.37 6.68 -51.93 -0.35 1.03 16 40 H 0.08 1.23 6.79 -51.93 -0.35 0.88 16 41 H 0.10 2.30 7.66 -52.49 -0.40 1.89 16 42 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 43 H 0.13 3.43 6.13 -52.49 -0.32 3.10 16 44 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 45 H 0.13 2.65 2.76 -57.75 -0.16 2.49 16 46 H 0.07 0.89 6.86 -51.93 -0.36 0.54 16 47 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -29.37 374.08 -11.43 -40.80 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.20 Total: 9.16 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -5.93 Total: -24.51 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.00 Total: -31.02 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.37 -11.43 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069519533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.484 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds