Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32635 * 124.64828 * 2 1 4 4 C 1.44623 * 113.10444 * 179.97438 * 3 2 1 5 5 C 1.46360 * 123.53151 * 180.02562 * 4 3 2 6 6 O 1.21352 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.99846 * 0.02562 * 5 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 5 10 10 O 1.21288 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00115 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46836 * 89.99960 * 12 11 9 14 14 H 1.07994 * 120.00445 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99368 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99702 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00160 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46983 * 89.99885 * 17 15 13 19 19 H 1.48502 * 109.46686 * 209.99557 * 17 15 13 20 20 H 1.48496 * 109.47191 * 329.99556 * 17 15 13 21 21 C 1.46504 * 119.99736 * 359.97438 * 11 9 8 22 22 C 1.52999 * 109.46615 * 120.00144 * 21 11 9 23 23 C 1.52997 * 109.47144 * 239.99782 * 21 11 9 24 24 C 1.36487 * 112.93965 * 0.26499 * 4 3 2 25 25 C 1.50697 * 124.61955 * 179.72919 * 24 4 3 26 26 S 1.70443 * 110.76110 * 359.59325 * 24 4 3 27 27 H 1.08998 * 109.46787 * 89.99939 * 1 2 3 28 28 H 1.08997 * 109.46758 * 210.00157 * 1 2 3 29 29 H 1.09000 * 109.46974 * 329.99834 * 1 2 3 30 30 H 1.07994 * 123.44613 * 359.94298 * 3 2 1 31 31 H 1.09002 * 109.47060 * 299.99944 * 7 5 4 32 32 H 1.09001 * 109.47380 * 60.00031 * 7 5 4 33 33 H 1.09002 * 109.47153 * 299.99998 * 8 7 5 34 34 H 1.08998 * 109.47533 * 59.99628 * 8 7 5 35 35 H 1.08998 * 109.46420 * 209.99986 * 12 11 9 36 36 H 1.08995 * 109.46904 * 329.99992 * 12 11 9 37 37 H 0.97004 * 119.99964 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.47369 * 0.02562 * 21 11 9 39 39 H 1.09001 * 109.47510 * 60.00526 * 22 21 11 40 40 H 1.09005 * 109.47098 * 179.97438 * 22 21 11 41 41 H 1.08999 * 109.47453 * 299.99864 * 22 21 11 42 42 H 1.09000 * 109.46998 * 60.00780 * 23 21 11 43 43 H 1.09004 * 109.46771 * 180.02562 * 23 21 11 44 44 H 1.08995 * 109.47592 * 300.00604 * 23 21 11 45 45 H 1.08999 * 109.46968 * 90.00436 * 25 24 4 46 46 H 1.09006 * 109.47239 * 210.00004 * 25 24 4 47 47 H 1.08996 * 109.47303 * 330.00363 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2612 1.0911 0.0000 4 6 3.6781 0.8017 0.0006 5 6 4.7144 1.8353 0.0013 6 8 5.8862 1.5197 0.0013 7 6 4.3263 3.2914 0.0019 8 6 5.5887 4.1558 0.0032 9 6 5.2006 5.6119 0.0032 10 8 4.0295 5.9274 0.0028 11 7 6.1548 6.5637 0.0037 12 6 5.7775 7.9793 0.0043 13 6 5.6480 8.4640 1.4254 14 1 5.8290 7.7857 2.2460 15 6 5.2993 9.7739 1.6778 16 7 5.1858 10.1968 2.9179 17 14 4.9868 10.9474 0.2584 18 1 3.5510 10.8982 -0.1176 19 1 5.3434 12.3288 0.6706 20 1 5.8174 10.5483 -0.9060 21 6 7.5694 6.1827 0.0048 22 6 8.2502 6.7463 -1.2441 23 6 8.2486 6.7467 1.2544 24 6 3.9478 -0.5362 -0.0048 25 6 5.3327 -1.1304 -0.0114 26 16 2.5049 -1.4434 0.0008 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.8583 2.0931 -0.0009 31 1 3.7363 3.5106 -0.8880 32 1 3.7360 3.5098 0.8919 33 1 6.1783 3.9365 0.8934 34 1 6.1793 3.9376 -0.8865 35 1 6.5439 8.5598 -0.5092 36 1 4.8240 8.1014 -0.5095 37 1 4.9408 11.1184 3.0956 38 1 7.6530 5.0959 0.0046 39 1 8.1668 7.8331 -1.2443 40 1 9.3029 6.4632 -1.2431 41 1 7.7664 6.3445 -2.1343 42 1 7.7636 6.3452 2.1441 43 1 9.3012 6.4636 1.2549 44 1 8.1650 7.8335 1.2542 45 1 5.6699 -1.2772 1.0147 46 1 5.3139 -2.0899 -0.5284 47 1 6.0158 -0.4541 -0.5252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069586238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -58.618467 kcal Electronic energy + Delta-G solvation = -26809.613080 eV Core-core repulsion = 23083.766100 eV Total energy + Delta-G solvation = -3725.846980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09339 -39.13247 -37.29107 -36.06113 -33.39169 -32.96402 -32.43915 -30.96311 -29.84212 -28.34571 -26.74992 -26.49727 -24.94323 -23.27094 -21.94576 -21.15390 -20.49645 -18.65180 -17.92011 -17.32904 -16.86991 -16.69445 -15.86428 -15.77742 -15.06700 -14.75942 -14.61933 -14.21920 -14.05450 -13.83337 -13.56652 -13.52231 -13.41969 -13.21380 -12.91032 -12.87065 -12.52243 -12.26682 -12.22201 -11.94215 -11.81874 -11.80616 -11.79234 -11.66123 -11.32365 -11.15526 -11.04622 -10.86129 -10.82493 -10.48502 -10.27084 -10.07574 -9.59282 -9.43580 -8.95749 -8.86542 -8.68088 -8.55032 -7.66965 -6.05209 -4.02295 0.45341 1.19860 1.54860 1.63304 2.90020 3.30346 3.36298 3.38223 3.38560 3.74305 4.18866 4.38791 4.42203 4.63387 4.89534 4.93637 4.99881 5.13471 5.21818 5.25064 5.28035 5.28476 5.31195 5.37091 5.40265 5.54574 5.60029 5.67637 5.72492 5.76470 5.85685 6.00008 6.01260 6.02913 6.09030 6.13352 6.15323 6.29951 6.35119 6.57110 6.81232 6.99719 7.03647 7.41653 7.50212 7.65822 8.32048 8.51677 8.97325 9.03144 9.55726 11.08063 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.002578 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.622656 B =10859.161866 C =11994.836532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.206 4.206 3 C -0.097 4.097 4 C -0.198 4.198 5 C 0.418 3.582 6 O -0.458 6.458 7 C -0.144 4.144 8 C -0.130 4.130 9 C 0.507 3.493 10 O -0.545 6.545 11 N -0.588 5.588 12 C 0.215 3.785 13 C -0.520 4.520 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.873 3.127 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.131 3.869 22 C -0.162 4.162 23 C -0.156 4.156 24 C -0.143 4.143 25 C -0.096 4.096 26 S 0.168 5.832 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 -23.482 -8.149 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.322 4.322 3 C -0.125 4.125 4 C -0.213 4.213 5 C 0.296 3.704 6 O -0.335 6.335 7 C -0.182 4.182 8 C -0.170 4.170 9 C 0.294 3.706 10 O -0.423 6.423 11 N -0.319 5.319 12 C 0.094 3.906 13 C -0.558 4.558 14 H 0.094 0.906 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.700 3.300 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.191 1.191 21 C 0.027 3.973 22 C -0.220 4.220 23 C -0.214 4.214 24 C -0.262 4.262 25 C -0.155 4.155 26 S 0.434 5.566 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.173 0.827 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.375 -24.826 -8.040 26.203 hybrid contribution 0.084 2.356 -0.499 2.410 sum -2.292 -22.470 -8.539 24.146 Atomic orbital electron populations 1.20351 0.87430 1.03381 1.02910 1.24253 1.00412 0.95857 1.11698 1.21269 0.90844 0.99824 1.00574 1.20725 0.94886 0.93397 1.12255 1.21871 0.87335 0.90551 0.70673 1.90470 1.20740 1.84914 1.37405 1.21722 0.99476 0.90972 1.06054 1.21474 0.98353 0.92535 1.04669 1.20326 0.85921 0.87263 0.77048 1.90656 1.18065 1.83178 1.50437 1.48019 1.04833 1.07873 1.71196 1.19616 0.95934 0.76684 0.98362 1.21344 1.46883 0.96324 0.91279 0.90563 1.24854 0.94848 0.98010 0.95389 1.69897 1.48471 1.16852 1.18547 0.86898 0.79378 0.80563 0.83136 1.20018 1.21198 1.19135 1.21065 0.81607 0.98964 0.95668 1.22168 0.99907 1.02546 0.97418 1.22128 0.98201 1.04090 0.97004 1.24802 1.01681 0.97054 1.02682 1.20649 0.90370 1.00814 1.03626 1.82966 0.93742 1.08945 1.70914 0.90682 0.91359 0.90164 0.82743 0.87713 0.87442 0.88802 0.89105 0.95183 0.94799 0.92680 0.90122 0.91672 0.92005 0.92896 0.92451 0.93228 0.90129 0.90066 0.91480 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.34 36.01 0.37 -0.16 16 2 C -0.21 -1.85 6.43 -36.20 -0.23 -2.08 16 3 C -0.10 -1.00 9.72 -38.96 -0.38 -1.38 16 4 C -0.20 -2.31 5.97 -104.75 -0.63 -2.94 16 5 C 0.42 5.40 7.11 -31.04 -0.22 5.18 16 6 O -0.46 -6.57 13.71 5.49 0.08 -6.50 16 7 C -0.14 -1.95 4.11 -27.88 -0.11 -2.06 16 8 C -0.13 -1.97 3.30 -27.89 -0.09 -2.06 16 9 C 0.51 10.20 7.67 -10.99 -0.08 10.12 16 10 O -0.55 -12.95 15.56 5.55 0.09 -12.86 16 11 N -0.59 -12.06 2.39 -167.47 -0.40 -12.46 16 12 C 0.21 5.20 3.66 -5.19 -0.02 5.18 16 13 C -0.52 -14.64 8.38 -34.44 -0.29 -14.93 16 14 H 0.08 2.35 7.87 -52.49 -0.41 1.94 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 17 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 18 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 21 C 0.13 2.15 3.17 -67.93 -0.22 1.93 16 22 C -0.16 -2.32 9.17 37.16 0.34 -1.98 16 23 C -0.16 -2.68 8.47 37.16 0.31 -2.37 16 24 C -0.14 -1.50 6.36 -34.94 -0.22 -1.72 16 25 C -0.10 -0.89 9.60 36.00 0.35 -0.55 16 26 S 0.17 1.42 22.94 -107.50 -2.47 -1.05 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.16 1.46 7.76 -52.49 -0.41 1.05 16 31 H 0.10 1.36 8.10 -51.93 -0.42 0.94 16 32 H 0.11 1.49 8.10 -51.93 -0.42 1.07 16 33 H 0.09 1.39 7.75 -51.93 -0.40 0.99 16 34 H 0.09 1.23 7.74 -51.93 -0.40 0.83 16 35 H 0.03 0.70 5.49 -51.93 -0.28 0.42 16 36 H 0.03 0.89 6.85 -51.93 -0.36 0.53 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.08 1.14 5.77 -51.93 -0.30 0.84 16 39 H 0.06 1.03 6.66 -51.93 -0.35 0.68 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 1.09 5.96 -51.93 -0.31 0.78 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -33.83 392.26 -9.30 -43.13 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.39 Total: 1.58 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.22 Total: -7.86 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.37 Total: -39.26 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.16 Total: -19.36 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.47 Total: -1.05 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.83 -9.30 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069586238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.486 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds