Wall clock time and date at job start Tue Mar 31 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99948 * 2 1 4 4 H 1.48506 * 109.46740 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47101 * 299.99814 * 3 2 1 6 6 H 1.48497 * 109.47041 * 60.00338 * 3 2 1 7 7 C 1.37878 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99825 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00058 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47132 * 179.97438 * 9 7 2 11 11 C 1.46493 * 119.99840 * 89.99917 * 10 9 7 12 12 C 1.53005 * 109.47280 * 79.83037 * 11 10 9 13 13 C 1.52989 * 117.49711 * 243.62000 * 12 11 10 14 14 C 1.52992 * 117.49817 * 174.99759 * 12 11 10 15 15 C 1.34781 * 119.99591 * 270.00194 * 10 9 7 16 16 O 1.21555 * 120.00450 * 1.98370 * 15 10 9 17 17 C 1.47804 * 119.99560 * 181.98635 * 15 10 9 18 18 C 1.39611 * 120.13253 * 22.39496 * 17 15 10 19 19 C 1.37913 * 119.86013 * 179.76290 * 18 17 15 20 20 C 1.38470 * 120.13325 * 0.49154 * 19 18 17 21 21 Br 1.89098 * 119.86461 * 179.74026 * 20 19 18 22 22 C 1.38483 * 120.27465 * 359.76080 * 20 19 18 23 23 C 1.37911 * 120.13245 * 0.02562 * 22 20 19 24 24 H 0.96999 * 119.99984 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46995 * 60.00025 * 9 7 2 26 26 H 1.08991 * 109.47318 * 299.99937 * 9 7 2 27 27 H 1.08998 * 109.47418 * 319.82962 * 11 10 9 28 28 H 1.09007 * 109.47127 * 199.82916 * 11 10 9 29 29 H 1.09003 * 115.54560 * 29.33016 * 12 11 10 30 30 H 1.08994 * 117.50573 * 0.02562 * 13 12 11 31 31 H 1.09005 * 117.49669 * 145.02232 * 13 12 11 32 32 H 1.09004 * 117.49937 * 214.98185 * 14 12 11 33 33 H 1.08999 * 117.50332 * 359.97438 * 14 12 11 34 34 H 1.07997 * 120.07047 * 0.02562 * 18 17 15 35 35 H 1.08000 * 119.92902 * 180.23248 * 19 18 17 36 36 H 1.08001 * 119.93159 * 179.97438 * 22 20 19 37 37 H 1.07998 * 120.06648 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6789 -4.1694 1.2692 12 6 1.6221 -5.1182 1.8383 13 6 0.9790 -4.7399 3.1739 14 6 1.9798 -5.8950 3.1069 15 6 2.6408 -4.1249 -1.1668 16 8 2.2740 -3.6396 -2.2191 17 6 3.5671 -5.2766 -1.1671 18 6 3.6330 -6.1234 -0.0591 19 6 4.4958 -7.1993 -0.0674 20 6 5.3030 -7.4346 -1.1676 21 35 6.4885 -8.9078 -1.1680 22 6 5.2460 -6.5952 -2.2676 23 6 4.3841 -5.5186 -2.2730 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8589 -3.3599 1.9765 28 1 3.6060 -4.7174 1.1005 29 1 0.9947 -5.6195 1.1012 30 1 1.3083 -3.8149 3.6471 31 1 -0.0720 -4.9921 3.3158 32 1 1.5875 -6.9073 3.2047 33 1 2.9683 -5.7306 3.5359 34 1 3.0066 -5.9388 0.8011 35 1 4.5449 -7.8572 0.7876 36 1 5.8783 -6.7836 -3.1226 37 1 4.3408 -4.8644 -3.1312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069699306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:14 Heat of formation + Delta-G solvation = 48.996651 kcal Electronic energy + Delta-G solvation = -20970.460400 eV Core-core repulsion = 17761.142381 eV Total energy + Delta-G solvation = -3209.318020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36300 -38.11589 -37.40391 -34.54561 -32.94975 -32.21869 -31.18925 -29.65720 -27.78602 -26.46244 -23.76508 -22.90671 -22.22164 -21.93112 -20.81056 -19.15711 -17.14365 -16.55791 -16.45770 -15.67715 -15.38136 -14.84780 -14.69075 -14.27969 -14.14257 -13.69005 -13.57714 -13.10941 -12.89949 -12.33224 -12.22791 -11.57298 -11.55378 -11.43631 -11.29094 -11.00832 -10.95522 -10.75694 -10.66817 -10.40058 -10.36560 -10.16100 -9.91394 -9.64181 -9.15477 -9.01562 -8.70189 -8.46024 -7.77784 -6.07120 -4.11684 0.72459 1.21942 1.43281 3.10648 3.28146 3.36024 3.39672 3.64777 3.81330 4.01646 4.42467 4.67689 4.69073 4.78680 4.92895 4.97243 5.14026 5.27294 5.28820 5.30106 5.48773 5.58365 5.65583 5.68612 5.86230 5.92333 6.03052 6.05567 6.09132 6.21401 6.32450 6.38090 6.65719 7.03462 7.38125 7.46054 7.88957 8.19328 8.28814 8.82605 8.97980 9.53305 11.01074 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.016923 B = 0.003273 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.161667 B = 8552.365813 C = 9604.786340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.247 3.753 10 N -0.581 5.581 11 C 0.111 3.889 12 C -0.179 4.179 13 C -0.165 4.165 14 C -0.182 4.182 15 C 0.542 3.458 16 O -0.530 6.530 17 C -0.103 4.103 18 C -0.119 4.119 19 C -0.101 4.101 20 C -0.078 4.078 21 Br -0.058 7.058 22 C -0.102 4.102 23 C -0.061 4.061 24 H 0.263 0.737 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.177 0.823 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.821 -19.223 3.394 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.311 5.311 11 C -0.012 4.012 12 C -0.199 4.199 13 C -0.202 4.202 14 C -0.220 4.220 15 C 0.328 3.672 16 O -0.408 6.408 17 C -0.107 4.107 18 C -0.138 4.138 19 C -0.121 4.121 20 C -0.158 4.158 21 Br 0.027 6.973 22 C -0.122 4.122 23 C -0.081 4.081 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.194 0.806 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.885 -19.348 2.841 22.380 hybrid contribution 0.156 1.272 0.036 1.282 sum 11.041 -18.075 2.877 21.375 Atomic orbital electron populations 1.69940 1.05969 1.26924 1.50419 1.24919 0.94866 0.99183 0.95029 0.86454 0.80033 0.83404 0.77618 1.19792 1.20842 1.20958 1.21452 0.93399 0.90594 1.51104 0.92383 1.19339 0.87254 0.81885 0.98690 1.48100 1.44899 1.34549 1.03536 1.21885 0.95520 0.96594 0.87242 1.22846 1.02862 1.02541 0.91632 1.22988 0.98304 0.99257 0.99611 1.23010 1.00861 0.96852 1.01280 1.18146 0.81499 0.82841 0.84666 1.90767 1.58053 1.61233 1.30779 1.20495 0.98206 0.96985 0.95020 1.22828 0.98793 0.93013 0.99143 1.21091 0.95916 0.97836 0.97282 1.21984 0.99424 0.96056 0.98311 1.96695 1.60868 1.40645 1.99071 1.21055 0.99401 0.94353 0.97359 1.21318 0.92932 0.96046 0.97804 0.92753 0.93807 0.94442 0.89937 0.88542 0.87404 0.88207 0.88857 0.88764 0.88559 0.80646 0.84707 0.84679 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.25 6.31 5.14 -5.19 -0.03 6.29 16 10 N -0.58 -12.05 2.47 -176.19 -0.44 -12.49 16 11 C 0.11 1.75 5.12 -4.04 -0.02 1.73 16 12 C -0.18 -2.38 4.03 -90.63 -0.37 -2.74 16 13 C -0.16 -2.03 10.18 -26.74 -0.27 -2.30 16 14 C -0.18 -1.83 9.98 -26.74 -0.27 -2.09 16 15 C 0.54 11.38 7.53 -12.35 -0.09 11.29 16 16 O -0.53 -13.35 16.16 5.32 0.09 -13.26 16 17 C -0.10 -1.68 5.62 -104.96 -0.59 -2.27 16 18 C -0.12 -1.57 7.54 -39.19 -0.30 -1.86 16 19 C -0.10 -1.15 9.77 -39.61 -0.39 -1.53 16 20 C -0.08 -0.90 6.23 -39.41 -0.25 -1.15 16 21 Br -0.06 -0.58 33.69 -68.01 -2.29 -2.87 16 22 C -0.10 -1.23 9.77 -39.61 -0.39 -1.61 16 23 C -0.06 -0.89 9.59 -39.19 -0.38 -1.27 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.04 1.27 7.45 -51.93 -0.39 0.88 16 26 H 0.04 0.96 8.07 -51.93 -0.42 0.55 16 27 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 28 H 0.10 1.33 4.26 -51.93 -0.22 1.11 16 29 H 0.11 1.52 8.13 -51.93 -0.42 1.09 16 30 H 0.10 1.28 8.03 -51.93 -0.42 0.86 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.18 2.15 2.34 -52.49 -0.12 2.03 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.14 2.09 7.82 -52.49 -0.41 1.68 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -31.55 332.42 -10.13 -41.68 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.47 Total: 1.65 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -3.75 Total: -10.92 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.30 Total: -37.95 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.29 Total: -2.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.55 -10.13 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069699306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.677 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds