Wall clock time and date at job start Tue Mar 31 2020 04:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48498 * 109.46842 * 269.99434 * 3 2 1 5 5 H 1.48500 * 109.47272 * 29.99614 * 3 2 1 6 6 H 1.48505 * 109.46923 * 149.99794 * 3 2 1 7 7 C 1.37882 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99718 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99935 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47215 * 179.97438 * 9 7 2 11 11 C 1.46505 * 120.00017 * 74.80034 * 10 9 7 12 12 C 1.50701 * 109.46758 * 90.00118 * 11 10 9 13 13 C 1.38229 * 119.61580 * 94.98348 * 12 11 10 14 14 C 1.38636 * 119.15867 * 179.79269 * 13 12 11 15 15 C 1.38668 * 118.41866 * 0.46856 * 14 13 12 16 16 C 1.38184 * 119.16728 * 359.50559 * 15 14 13 17 17 N 1.31858 * 119.62214 * 275.00230 * 12 11 10 18 18 C 1.34773 * 120.00212 * 254.80573 * 10 9 7 19 19 O 1.21600 * 120.00028 * 183.52609 * 18 10 9 20 20 C 1.47576 * 120.00007 * 3.52972 * 18 10 9 21 21 C 1.40238 * 119.83196 * 23.61136 * 20 18 10 22 22 C 1.36202 * 120.37695 * 179.77392 * 21 20 18 23 23 C 1.39917 * 119.95909 * 0.48590 * 22 21 20 24 24 C 1.46256 * 133.83608 * 179.79511 * 23 22 21 25 25 C 1.34457 * 107.03102 * 179.97438 * 24 23 22 26 26 N 1.36564 * 109.97882 * 359.97438 * 25 24 23 27 27 H 0.96994 * 125.07137 * 180.02562 * 26 25 24 28 28 C 1.37825 * 109.85765 * 0.02562 * 26 25 24 29 29 C 1.38687 * 133.37130 * 180.02562 * 28 26 25 30 30 H 0.97002 * 119.99527 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47228 * 60.00219 * 9 7 2 32 32 H 1.09001 * 109.47261 * 299.99885 * 9 7 2 33 33 H 1.09004 * 109.47001 * 330.00549 * 11 10 9 34 34 H 1.08999 * 109.47535 * 210.00206 * 11 10 9 35 35 H 1.07996 * 120.42258 * 359.97438 * 13 12 11 36 36 H 1.07993 * 120.78605 * 180.22950 * 14 13 12 37 37 H 1.08004 * 120.42039 * 179.78641 * 15 14 13 38 38 H 1.07992 * 119.62021 * 180.25067 * 16 15 14 39 39 H 1.07999 * 119.81286 * 359.97438 * 21 20 18 40 40 H 1.07997 * 120.02286 * 180.25437 * 22 21 20 41 41 H 1.07997 * 126.48990 * 359.97438 * 24 23 22 42 42 H 1.08005 * 125.01187 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.16580 * 359.92768 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.9317 -3.9534 1.2249 12 6 2.1393 -4.9612 2.0172 13 6 2.4090 -6.3091 1.8718 14 6 1.6772 -7.2277 2.6085 15 6 0.6905 -6.7546 3.4602 16 6 0.4779 -5.3924 3.5537 17 7 1.1965 -4.5470 2.8408 18 6 2.4082 -4.3238 -1.1258 19 8 3.1495 -5.2876 -1.1098 20 6 1.7335 -3.9326 -2.3787 21 6 1.3008 -2.6103 -2.5546 22 6 0.6810 -2.2361 -3.7082 23 6 0.4641 -3.1763 -4.7215 24 6 -0.1561 -3.1146 -6.0447 25 6 -0.0754 -4.3474 -6.5752 26 7 0.5460 -5.1922 -5.7004 27 1 0.7193 -6.1328 -5.8617 28 6 0.8901 -4.5087 -4.5541 29 6 1.5250 -4.8799 -3.3783 30 1 -0.4849 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6239 -2.5567 0.8903 33 1 3.0771 -3.0540 1.8233 34 1 3.9015 -4.3774 0.9645 35 1 3.1819 -6.6422 1.1951 36 1 1.8684 -8.2867 2.5181 37 1 0.0987 -7.4418 4.0467 38 1 -0.2859 -5.0157 4.2178 39 1 1.4628 -1.8838 -1.7721 40 1 0.3538 -1.2153 -3.8393 41 1 -0.5958 -2.2438 -6.5079 42 1 -0.4464 -4.6281 -7.5500 43 1 1.8556 -5.8985 -3.2382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069744849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:16 Heat of formation + Delta-G solvation = 74.945158 kcal Electronic energy + Delta-G solvation = -28217.345656 eV Core-core repulsion = 24421.450707 eV Total energy + Delta-G solvation = -3795.894948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21956 -41.36277 -40.49980 -37.62047 -36.92324 -34.73635 -33.38973 -33.00667 -32.75687 -30.60954 -29.95522 -29.28409 -27.63274 -25.07395 -24.35620 -24.25140 -23.24992 -22.70134 -21.56194 -20.34862 -19.00273 -18.69240 -17.91118 -17.68932 -17.40453 -17.09360 -16.59892 -16.46830 -16.19993 -15.78865 -15.52888 -15.25636 -14.90054 -14.75382 -14.52855 -14.26215 -14.19792 -14.10253 -13.96532 -13.84129 -13.53889 -13.00398 -12.76793 -12.71337 -12.62468 -12.46089 -12.24585 -11.95084 -11.71851 -11.27534 -10.88677 -10.79038 -10.68693 -10.56154 -10.37235 -9.94817 -9.52494 -9.07322 -8.60806 -8.18437 -6.33523 -0.12917 0.13935 0.40461 0.61590 1.44534 1.45866 1.55342 1.66996 2.04932 2.13043 2.37423 2.47376 3.00056 3.01367 3.11129 3.39806 3.70849 3.83547 3.90354 4.02678 4.06374 4.19545 4.26750 4.35284 4.41643 4.47597 4.53225 4.61124 4.75966 4.78811 4.87733 4.90630 4.93293 5.09373 5.12659 5.24333 5.26810 5.32314 5.56508 5.65865 5.70135 5.75221 5.79941 5.83004 5.88631 6.03681 6.22669 6.54882 6.76239 6.79782 7.13980 7.22384 7.37564 8.86450 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007741 B = 0.005122 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3616.092028 B = 5465.364527 C = 8230.963835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.031 3.969 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.227 3.773 10 N -0.580 5.580 11 C 0.169 3.831 12 C 0.094 3.906 13 C -0.161 4.161 14 C -0.079 4.079 15 C -0.164 4.164 16 C 0.078 3.922 17 N -0.505 5.505 18 C 0.555 3.445 19 O -0.583 6.583 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.106 4.106 23 C -0.100 4.100 24 C -0.242 4.242 25 C 0.087 3.913 26 N -0.582 5.582 27 H 0.431 0.569 28 C 0.057 3.943 29 C -0.067 4.067 30 H 0.270 0.730 31 H 0.064 0.936 32 H 0.008 0.992 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.122 0.878 41 H 0.162 0.838 42 H 0.223 0.777 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 -13.142 -6.189 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.171 4.171 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.107 3.893 10 N -0.308 5.308 11 C 0.045 3.955 12 C -0.043 4.043 13 C -0.181 4.181 14 C -0.105 4.105 15 C -0.183 4.183 16 C -0.080 4.080 17 N -0.215 5.215 18 C 0.346 3.654 19 O -0.467 6.467 20 C -0.147 4.147 21 C -0.162 4.162 22 C -0.125 4.125 23 C -0.105 4.105 24 C -0.267 4.267 25 C -0.041 4.041 26 N -0.187 5.187 27 H 0.271 0.729 28 C -0.050 4.050 29 C -0.088 4.088 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.026 0.974 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.185 0.815 37 H 0.190 0.810 38 H 0.190 0.810 39 H 0.197 0.803 40 H 0.140 0.860 41 H 0.180 0.820 42 H 0.240 0.760 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.410 -12.725 -6.114 14.188 hybrid contribution 0.534 0.080 0.308 0.621 sum -0.877 -12.645 -5.805 13.941 Atomic orbital electron populations 1.70041 1.07191 1.28320 1.48959 1.25629 0.95525 1.02107 0.93887 0.85605 0.78688 0.79152 0.78623 1.19547 1.20572 1.19557 1.21466 0.93487 0.91124 1.52281 0.92444 1.20056 0.88083 0.82723 0.98482 1.47968 1.42194 1.32133 1.08506 1.20165 0.93626 0.97070 0.84641 1.21610 0.94463 0.93827 0.94442 1.22174 1.02024 0.93394 1.00509 1.21985 0.93662 1.01271 0.93553 1.22523 0.99012 0.96812 0.99995 1.23282 0.97355 0.90884 0.96439 1.67500 1.05752 1.41710 1.06534 1.18490 0.81113 0.81815 0.83990 1.90598 1.40538 1.29068 1.86495 1.19538 1.05124 0.95205 0.94845 1.22777 0.96482 0.97318 0.99587 1.20340 1.00529 0.99164 0.92432 1.19858 1.01328 0.92824 0.96509 1.22038 1.10885 0.99698 0.94052 1.22596 0.96206 0.88841 0.96443 1.41746 1.51691 1.12540 1.12697 0.72922 1.17984 1.04021 0.92773 0.90190 1.20001 0.98932 0.99343 0.90572 0.92118 0.91854 0.97387 0.89731 0.88777 0.84680 0.81533 0.80954 0.80962 0.80290 0.86007 0.82044 0.76021 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.61 13.29 21.45 0.28 -50.32 16 2 C 0.03 1.64 5.37 84.66 0.45 2.09 16 3 Si 0.95 42.38 29.54 68.60 2.03 44.40 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -29.26 7.16 25.60 0.18 -29.08 16 8 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.23 11.79 4.66 85.63 0.40 12.19 16 10 N -0.58 -27.15 2.48 -834.20 -2.07 -29.22 16 11 C 0.17 7.11 5.63 85.63 0.48 7.59 16 12 C 0.09 3.66 6.36 42.55 0.27 3.93 16 13 C -0.16 -5.21 9.72 22.36 0.22 -5.00 16 14 C -0.08 -1.95 10.18 22.47 0.23 -1.72 16 15 C -0.16 -3.79 10.11 22.36 0.23 -3.56 16 16 C 0.08 2.32 11.18 84.67 0.95 3.27 16 17 N -0.50 -19.83 10.27 -183.89 -1.89 -21.72 16 18 C 0.56 25.62 7.49 86.71 0.65 26.27 16 19 O -0.58 -26.93 15.98 -4.03 -0.06 -27.00 16 20 C -0.14 -6.29 5.60 -20.08 -0.11 -6.40 16 21 C -0.14 -6.56 7.40 22.28 0.16 -6.39 16 22 C -0.11 -4.33 10.03 22.20 0.22 -4.10 16 23 C -0.10 -3.48 6.37 -20.14 -0.13 -3.61 16 24 C -0.24 -6.13 11.08 23.49 0.26 -5.87 16 25 C 0.09 1.56 11.81 83.09 0.98 2.54 16 26 N -0.58 -12.45 6.07 -187.71 -1.14 -13.59 16 27 H 0.43 6.06 8.96 -92.71 -0.83 5.23 16 28 C 0.06 1.84 7.26 38.96 0.28 2.12 16 29 C -0.07 -2.49 9.60 22.63 0.22 -2.27 16 30 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.06 3.45 4.04 -2.87 -0.01 3.44 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 3.73 7.88 -2.39 -0.02 3.71 16 34 H 0.09 3.71 7.37 -2.39 -0.02 3.69 16 35 H 0.14 4.37 7.86 -2.91 -0.02 4.34 16 36 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 39 H 0.18 9.18 2.87 -2.91 -0.01 9.18 16 40 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 41 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.22 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.13 4.51 7.81 -2.91 -0.02 4.49 16 Total: -1.00 -72.44 365.37 3.33 -69.11 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: 0.23 Total: 36.33 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 5.95 Total: -8.00 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -4.81 Total: -114.86 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.06 Total: -27.00 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -72.44 3.33 -69.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069744849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.060 kcal (2) G-P(sol) polarization free energy of solvation -72.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds