Wall clock time and date at job start Tue Mar 31 2020 05:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47008 * 2 1 4 4 S 1.81397 * 109.47133 * 240.00003 * 2 1 3 5 5 C 1.81394 * 103.00034 * 65.00208 * 4 2 1 6 6 C 1.53004 * 109.47408 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47371 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99950 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00198 * 180.02562 * 7 6 5 10 10 C 1.37092 * 120.00478 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00183 * 18.10716 * 10 9 7 12 12 C 1.38953 * 120.00457 * 198.11436 * 10 9 7 13 13 N 1.31416 * 119.99633 * 18.72337 * 12 10 9 14 14 Si 1.86792 * 120.00160 * 198.72511 * 12 10 9 15 15 H 1.48502 * 109.47119 * 85.58638 * 14 12 10 16 16 H 1.48503 * 109.47253 * 205.58491 * 14 12 10 17 17 H 1.48495 * 109.47411 * 325.58396 * 14 12 10 18 18 C 1.46505 * 119.99828 * 359.97438 * 9 7 6 19 19 C 1.47206 * 109.46744 * 84.21157 * 18 9 7 20 20 N 7.60407 * 85.50628 * 246.09534 * 2 1 3 21 21 C 1.50704 * 109.47317 * 119.99886 * 2 1 3 22 22 C 1.38220 * 120.01099 * 94.99916 * 21 2 1 23 23 C 1.38226 * 120.02126 * 180.02562 * 22 21 2 24 24 C 1.38262 * 120.05577 * 0.02562 * 23 22 21 25 25 C 1.38172 * 120.02366 * 359.97438 * 24 23 22 26 26 C 1.38437 * 120.01527 * 275.02767 * 21 2 1 27 27 F 1.35107 * 120.02342 * 359.97438 * 26 21 2 28 28 H 1.09006 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47784 * 299.99848 * 1 2 3 30 30 H 1.09001 * 109.47405 * 60.00286 * 1 2 3 31 31 H 1.09006 * 109.47124 * 299.99699 * 5 4 2 32 32 H 1.08997 * 109.47744 * 59.99518 * 5 4 2 33 33 H 1.08993 * 109.47026 * 300.00290 * 6 5 4 34 34 H 1.09006 * 109.46618 * 59.99712 * 6 5 4 35 35 H 0.96999 * 119.99501 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47377 * 204.21082 * 18 9 7 37 37 H 1.09002 * 109.47186 * 324.21466 * 18 9 7 38 38 H 1.07997 * 119.98767 * 359.74584 * 22 21 2 39 39 H 1.08006 * 119.96815 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.99198 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.01390 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4811 5 6 1.5664 0.2153 -2.8308 6 6 2.0050 -0.3778 -4.1713 7 6 1.5325 0.5112 -5.2926 8 8 0.9061 1.5197 -5.0442 9 7 1.8050 0.1851 -6.5717 10 6 1.3756 0.9940 -7.5918 11 1 1.0864 2.0143 -7.3868 12 6 1.3121 0.5014 -8.8895 13 7 1.2998 -0.7957 -9.1000 14 14 1.2444 1.6829 -10.3348 15 1 2.6242 2.0771 -10.7170 16 1 0.5824 1.0189 -11.4863 17 1 0.4728 2.8919 -9.9501 18 6 2.5611 -1.0333 -6.8718 19 6 1.6440 -2.1843 -6.9045 20 7 0.9342 -3.0718 -6.9304 21 6 2.0323 -0.7104 1.2305 22 6 2.3611 -2.0515 1.1687 23 6 2.8215 -2.7034 2.2973 24 6 2.9531 -2.0152 3.4892 25 6 2.6250 -0.6745 3.5534 26 6 2.1642 -0.0202 2.4233 27 9 1.8430 1.2907 2.4848 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.4792 0.2881 -2.8037 32 1 2.0000 1.2085 -2.7141 33 1 3.0922 -0.4503 -4.1982 34 1 1.5716 -1.3711 -4.2883 35 1 1.2559 -1.1396 -10.0059 36 1 3.0482 -0.9291 -7.8413 37 1 3.3157 -1.1917 -6.1013 38 1 2.2541 -2.5913 0.2394 39 1 3.0785 -3.7513 2.2479 40 1 3.3124 -2.5257 4.3705 41 1 2.7282 -0.1370 4.4844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069774713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:15 Heat of formation + Delta-G solvation = -25.917986 kcal Electronic energy + Delta-G solvation = -25251.171253 eV Core-core repulsion = 21365.167534 eV Total energy + Delta-G solvation = -3886.003718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.105 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.14940 -39.41188 -38.94714 -35.87729 -34.59104 -34.41254 -32.53757 -31.67253 -30.88040 -29.70573 -27.50325 -25.64825 -24.43098 -23.40811 -23.11309 -21.44794 -19.12314 -17.96525 -17.88558 -16.98829 -16.77840 -16.45171 -16.26645 -15.86070 -15.43830 -15.01970 -14.79542 -14.59640 -14.30635 -14.22954 -13.80940 -13.66595 -13.32265 -13.02098 -12.99203 -12.77081 -12.46888 -12.22393 -12.08760 -11.93826 -11.79329 -11.59807 -11.54931 -11.32884 -11.20306 -11.07922 -10.96319 -10.56395 -10.43467 -10.33361 -9.81179 -9.31075 -9.26647 -8.95262 -8.67650 -8.09866 -7.66701 -6.53547 -4.05522 0.80209 0.90589 1.59065 2.54172 3.07840 3.19991 3.23587 3.28758 3.51076 3.75199 3.96275 3.97190 4.09415 4.16950 4.48929 4.66400 4.76098 4.82944 4.86678 4.93136 4.97200 5.11559 5.15489 5.18188 5.26173 5.42232 5.56395 5.59352 5.62441 5.76674 5.80593 5.81505 5.93824 6.03629 6.06813 6.12173 6.16439 6.20639 6.51383 6.57291 7.42947 7.84129 8.22913 8.72338 8.94753 9.14310 9.66877 10.52162 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.002322 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.244939 B =12058.136113 C =12833.061430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.019 4.019 3 H 0.099 0.901 4 S -0.250 6.250 5 C -0.062 4.062 6 C -0.120 4.120 7 C 0.460 3.540 8 O -0.575 6.575 9 N -0.441 5.441 10 C -0.312 4.312 11 H 0.109 0.891 12 C 0.031 3.969 13 N -0.880 5.880 14 Si 0.931 3.069 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.270 1.270 18 C 0.221 3.779 19 C 0.246 3.754 20 N -0.472 5.472 21 C -0.096 4.096 22 C -0.077 4.077 23 C -0.126 4.126 24 C -0.094 4.094 25 C -0.154 4.154 26 C 0.106 3.894 27 F -0.137 7.137 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.274 0.726 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 -2.589 20.803 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 H 0.117 0.883 4 S -0.020 6.020 5 C -0.210 4.210 6 C -0.162 4.162 7 C 0.247 3.753 8 O -0.458 6.458 9 N -0.161 5.161 10 C -0.439 4.439 11 H 0.126 0.874 12 C -0.172 4.172 13 N -0.519 5.519 14 Si 0.757 3.243 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.194 1.194 18 C 0.093 3.907 19 C -0.072 4.072 20 N -0.152 5.152 21 C -0.097 4.097 22 C -0.096 4.096 23 C -0.145 4.145 24 C -0.112 4.112 25 C -0.173 4.173 26 C 0.085 3.915 27 F -0.116 7.116 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.101 0.899 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.641 -4.387 20.616 21.819 hybrid contribution -0.558 2.080 -0.886 2.329 sum 5.083 -2.307 19.729 20.504 Atomic orbital electron populations 1.22074 0.91817 1.03521 1.02876 1.21864 0.99152 1.01363 0.92404 0.88319 1.86552 1.75823 1.39097 1.00555 1.23160 1.04492 1.00044 0.93349 1.21327 1.02610 1.00213 0.92052 1.19930 0.83850 0.88079 0.83432 1.90548 1.43613 1.28363 1.83250 1.43615 1.47765 1.19826 1.04935 1.19738 1.43640 0.95471 0.85085 0.87375 1.25306 0.96387 0.96295 0.99256 1.69827 1.47852 1.11453 1.22752 0.85859 0.78579 0.80007 0.79841 1.20046 1.21073 1.19411 1.18780 0.89240 0.78517 1.04164 1.29328 0.94161 0.93326 0.90432 1.80935 1.08937 1.13542 1.11830 1.19412 1.02738 0.94931 0.92664 1.21106 0.96215 0.92854 0.99418 1.21236 1.00119 1.00593 0.92508 1.21038 0.98461 0.93333 0.98360 1.21107 1.02666 0.95878 0.97668 1.17499 1.01242 0.78362 0.94374 1.91501 1.90393 1.32695 1.96962 0.91051 0.91738 0.91236 0.89299 0.89295 0.89090 0.89428 0.91538 0.85199 0.89859 0.83845 0.85082 0.85009 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.08 37.15 0.34 -1.25 16 2 C -0.02 -0.22 2.78 -27.88 -0.08 -0.30 16 3 H 0.10 1.19 7.79 -51.92 -0.40 0.79 16 4 S -0.25 -3.27 19.07 -107.50 -2.05 -5.32 16 5 C -0.06 -0.96 4.93 37.16 0.18 -0.77 16 6 C -0.12 -2.01 4.31 -27.88 -0.12 -2.13 16 7 C 0.46 10.05 7.56 -10.99 -0.08 9.97 16 8 O -0.57 -14.48 15.64 5.55 0.09 -14.39 16 9 N -0.44 -10.04 2.60 -117.93 -0.31 -10.35 16 10 C -0.31 -7.89 9.33 -14.93 -0.14 -8.02 16 11 H 0.11 2.89 7.38 -52.48 -0.39 2.50 16 12 C 0.03 0.75 4.93 -17.46 -0.09 0.67 16 13 N -0.88 -21.84 9.34 55.50 0.52 -21.32 16 14 Si 0.93 19.44 29.59 -169.99 -5.03 14.41 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 C 0.22 4.27 4.91 -6.82 -0.03 4.23 16 19 C 0.25 5.35 12.95 -20.73 -0.27 5.08 16 20 N -0.47 -11.11 18.54 42.18 0.78 -10.33 16 21 C -0.10 -1.04 5.00 -104.55 -0.52 -1.57 16 22 C -0.08 -0.77 9.09 -39.59 -0.36 -1.13 16 23 C -0.13 -1.00 10.04 -39.58 -0.40 -1.40 16 24 C -0.09 -0.67 10.04 -39.60 -0.40 -1.07 16 25 C -0.15 -1.29 10.03 -39.52 -0.40 -1.69 16 26 C 0.11 1.11 7.24 -39.42 -0.29 0.83 16 27 F -0.14 -1.57 16.57 2.25 0.04 -1.53 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.81 6.92 -51.93 -0.36 0.45 16 31 H 0.09 1.45 7.10 -51.92 -0.37 1.08 16 32 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.09 1.30 7.42 -51.93 -0.39 0.91 16 34 H 0.09 1.48 7.51 -51.93 -0.39 1.09 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.13 2.59 6.40 -51.93 -0.33 2.25 16 37 H 0.08 1.23 6.68 -51.93 -0.35 0.88 16 38 H 0.14 1.46 6.48 -52.49 -0.34 1.12 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -30.09 365.46 -8.09 -38.17 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.98 Total: 3.71 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.65 Total: 1.44 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.99 Total: -42.00 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.05 Total: -5.32 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.09 -8.09 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069774713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.255 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds