Wall clock time and date at job start Tue Mar 31 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47008 * 2 1 4 4 S 1.81397 * 109.47133 * 240.00003 * 2 1 3 5 5 C 1.81394 * 103.00034 * 65.00208 * 4 2 1 6 6 C 1.53004 * 109.47408 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47371 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99950 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00198 * 180.02562 * 7 6 5 10 10 C 1.37092 * 120.00478 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00183 * 18.10716 * 10 9 7 12 12 C 1.38953 * 120.00457 * 198.11436 * 10 9 7 13 13 N 1.31416 * 119.99633 * 18.72337 * 12 10 9 14 14 Si 1.86792 * 120.00160 * 198.72511 * 12 10 9 15 15 H 1.48502 * 109.47119 * 85.58638 * 14 12 10 16 16 H 1.48503 * 109.47253 * 205.58491 * 14 12 10 17 17 H 1.48495 * 109.47411 * 325.58396 * 14 12 10 18 18 C 1.46505 * 119.99828 * 359.97438 * 9 7 6 19 19 C 1.47206 * 109.46744 * 84.21157 * 18 9 7 20 20 N 7.60407 * 85.50628 * 246.09534 * 2 1 3 21 21 C 1.50704 * 109.47317 * 119.99886 * 2 1 3 22 22 C 1.38220 * 120.01099 * 94.99916 * 21 2 1 23 23 C 1.38226 * 120.02126 * 180.02562 * 22 21 2 24 24 C 1.38262 * 120.05577 * 0.02562 * 23 22 21 25 25 C 1.38172 * 120.02366 * 359.97438 * 24 23 22 26 26 C 1.38437 * 120.01527 * 275.02767 * 21 2 1 27 27 F 1.35107 * 120.02342 * 359.97438 * 26 21 2 28 28 H 1.09006 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47784 * 299.99848 * 1 2 3 30 30 H 1.09001 * 109.47405 * 60.00286 * 1 2 3 31 31 H 1.09006 * 109.47124 * 299.99699 * 5 4 2 32 32 H 1.08997 * 109.47744 * 59.99518 * 5 4 2 33 33 H 1.08993 * 109.47026 * 300.00290 * 6 5 4 34 34 H 1.09006 * 109.46618 * 59.99712 * 6 5 4 35 35 H 0.96999 * 119.99501 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47377 * 204.21082 * 18 9 7 37 37 H 1.09002 * 109.47186 * 324.21466 * 18 9 7 38 38 H 1.07997 * 119.98767 * 359.74584 * 22 21 2 39 39 H 1.08006 * 119.96815 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.99198 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.01390 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4811 5 6 1.5664 0.2153 -2.8308 6 6 2.0050 -0.3778 -4.1713 7 6 1.5325 0.5112 -5.2926 8 8 0.9061 1.5197 -5.0442 9 7 1.8050 0.1851 -6.5717 10 6 1.3756 0.9940 -7.5918 11 1 1.0864 2.0143 -7.3868 12 6 1.3121 0.5014 -8.8895 13 7 1.2998 -0.7957 -9.1000 14 14 1.2444 1.6829 -10.3348 15 1 2.6242 2.0771 -10.7170 16 1 0.5824 1.0189 -11.4863 17 1 0.4728 2.8919 -9.9501 18 6 2.5611 -1.0333 -6.8718 19 6 1.6440 -2.1843 -6.9045 20 7 0.9342 -3.0718 -6.9304 21 6 2.0323 -0.7104 1.2305 22 6 2.3611 -2.0515 1.1687 23 6 2.8215 -2.7034 2.2973 24 6 2.9531 -2.0152 3.4892 25 6 2.6250 -0.6745 3.5534 26 6 2.1642 -0.0202 2.4233 27 9 1.8430 1.2907 2.4848 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.4792 0.2881 -2.8037 32 1 2.0000 1.2085 -2.7141 33 1 3.0922 -0.4503 -4.1982 34 1 1.5716 -1.3711 -4.2883 35 1 1.2559 -1.1396 -10.0059 36 1 3.0482 -0.9291 -7.8413 37 1 3.3157 -1.1917 -6.1013 38 1 2.2541 -2.5913 0.2394 39 1 3.0785 -3.7513 2.2479 40 1 3.3124 -2.5257 4.3705 41 1 2.7282 -0.1370 4.4844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069774713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:14 Heat of formation + Delta-G solvation = -40.138187 kcal Electronic energy + Delta-G solvation = -25251.787887 eV Core-core repulsion = 21365.167534 eV Total energy + Delta-G solvation = -3886.620353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.105 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.94731 -40.67953 -40.09305 -37.64953 -36.21275 -35.39721 -34.11897 -33.36093 -31.55707 -30.47516 -29.19868 -27.31907 -25.25213 -24.93528 -23.80195 -22.24949 -20.76128 -19.75651 -18.65104 -18.39239 -18.04352 -17.73980 -17.17119 -16.73538 -16.63598 -16.45713 -16.15733 -15.96550 -15.32728 -15.24477 -14.94442 -14.73111 -14.68038 -14.40424 -14.24731 -13.99889 -13.80303 -13.48310 -13.24082 -13.19728 -13.09879 -12.96535 -12.89056 -12.59190 -12.50438 -12.35517 -12.32231 -12.13663 -12.03855 -11.86991 -11.12896 -10.87330 -10.47310 -9.94744 -9.93993 -9.65188 -8.72198 -8.40479 -5.98736 0.08564 0.23696 0.55423 1.39632 1.43790 1.48292 1.57593 1.80200 2.04185 2.25571 2.35584 2.62504 3.00077 3.14421 3.27681 3.34922 3.59606 3.79188 3.81992 3.92400 3.95110 3.99293 4.05548 4.18556 4.38491 4.41910 4.43976 4.55852 4.64481 4.73372 4.78531 4.89563 4.90989 4.93759 5.07286 5.10547 5.17511 5.36882 5.47440 5.48074 5.92716 6.01349 6.37907 7.00686 7.10122 7.33106 7.88534 8.62653 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.002322 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.244939 B =12058.136113 C =12833.061430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.017 4.017 3 H 0.090 0.910 4 S -0.230 6.230 5 C -0.064 4.064 6 C -0.107 4.107 7 C 0.454 3.546 8 O -0.616 6.616 9 N -0.454 5.454 10 C -0.339 4.339 11 H 0.083 0.917 12 C 0.004 3.996 13 N -0.894 5.894 14 Si 0.988 3.012 15 H -0.259 1.259 16 H -0.286 1.286 17 H -0.279 1.279 18 C 0.221 3.779 19 C 0.258 3.742 20 N -0.508 5.508 21 C -0.112 4.112 22 C -0.091 4.091 23 C -0.122 4.122 24 C -0.086 4.086 25 C -0.153 4.153 26 C 0.084 3.916 27 F -0.149 7.149 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.275 0.725 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.139 -3.876 22.414 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 H 0.108 0.892 4 S 0.000 6.000 5 C -0.213 4.213 6 C -0.148 4.148 7 C 0.243 3.757 8 O -0.502 6.502 9 N -0.174 5.174 10 C -0.466 4.466 11 H 0.100 0.900 12 C -0.198 4.198 13 N -0.533 5.533 14 Si 0.813 3.187 15 H -0.183 1.183 16 H -0.211 1.211 17 H -0.205 1.205 18 C 0.095 3.905 19 C -0.060 4.060 20 N -0.188 5.188 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.140 4.140 24 C -0.103 4.103 25 C -0.172 4.172 26 C 0.063 3.937 27 F -0.128 7.128 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.142 0.858 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.174 0.826 40 H 0.184 0.816 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.348 -5.695 22.224 24.090 hybrid contribution -1.090 2.455 -1.263 2.969 sum 6.258 -3.240 20.961 22.114 Atomic orbital electron populations 1.22029 0.91625 1.03589 1.02651 1.21873 0.99378 1.00971 0.92360 0.89159 1.86397 1.75564 1.38128 0.99907 1.23013 1.03542 1.00486 0.94212 1.21245 1.04428 0.98727 0.90431 1.20807 0.82773 0.87893 0.84250 1.90518 1.45289 1.30378 1.84021 1.43791 1.48172 1.20523 1.04869 1.19627 1.45266 0.95199 0.86519 0.89960 1.25903 0.95588 0.97565 1.00695 1.69910 1.47923 1.12348 1.23109 0.85003 0.79051 0.77743 0.76898 1.18339 1.21147 1.20472 1.19109 0.89122 0.76319 1.05991 1.29796 0.93702 0.93174 0.89305 1.80936 1.09897 1.14844 1.13162 1.19390 1.04141 0.95527 0.92329 1.21157 0.97223 0.92494 1.00158 1.21570 0.98728 1.01777 0.91958 1.21454 0.96885 0.92767 0.99230 1.21433 1.01573 0.96570 0.97622 1.17767 1.02617 0.78125 0.95163 1.91467 1.90707 1.33550 1.97048 0.90790 0.90995 0.92363 0.90962 0.89995 0.85817 0.89126 0.91520 0.85525 0.84474 0.84445 0.82594 0.81609 0.82735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.08 71.98 0.65 -2.49 16 2 C -0.02 -0.40 2.78 29.85 0.08 -0.32 16 3 H 0.09 2.24 7.79 -2.39 -0.02 2.22 16 4 S -0.23 -5.83 19.07 -56.49 -1.08 -6.91 16 5 C -0.06 -1.97 4.93 71.98 0.35 -1.62 16 6 C -0.11 -3.47 4.31 29.85 0.13 -3.34 16 7 C 0.45 19.96 7.56 87.66 0.66 20.62 16 8 O -0.62 -32.05 15.64 -3.07 -0.05 -32.10 16 9 N -0.45 -20.62 2.60 -645.40 -1.68 -22.30 16 10 C -0.34 -17.38 9.33 84.04 0.78 -16.59 16 11 H 0.08 4.57 7.38 -2.91 -0.02 4.55 16 12 C 0.00 0.22 4.93 84.93 0.42 0.64 16 13 N -0.89 -44.05 9.34 21.66 0.20 -43.85 16 14 Si 0.99 39.85 29.59 68.60 2.03 41.88 16 15 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 16 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 18 C 0.22 8.23 4.91 84.57 0.42 8.65 16 19 C 0.26 10.97 12.95 89.43 1.16 12.13 16 20 N -0.51 -23.64 18.54 20.02 0.37 -23.27 16 21 C -0.11 -2.36 5.00 -19.82 -0.10 -2.46 16 22 C -0.09 -1.67 9.09 22.26 0.20 -1.47 16 23 C -0.12 -1.57 10.04 22.27 0.22 -1.35 16 24 C -0.09 -0.92 10.04 22.26 0.22 -0.70 16 25 C -0.15 -2.19 10.03 22.31 0.22 -1.96 16 26 C 0.08 1.68 7.24 22.37 0.16 1.84 16 27 F -0.15 -3.39 16.57 44.97 0.75 -2.65 16 28 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.41 6.92 -2.39 -0.02 1.40 16 31 H 0.07 2.44 7.10 -2.39 -0.02 2.42 16 32 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 33 H 0.12 3.19 7.42 -2.39 -0.02 3.17 16 34 H 0.09 2.93 7.51 -2.38 -0.02 2.91 16 35 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 36 H 0.13 4.87 6.40 -2.39 -0.02 4.86 16 37 H 0.14 3.58 6.68 -2.39 -0.02 3.57 16 38 H 0.14 2.61 6.48 -2.91 -0.02 2.59 16 39 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -66.60 365.46 7.20 -59.40 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.06 Total: 18.21 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.60 Total: 11.58 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -1.10 Total: -89.42 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.05 Total: -32.10 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.75 Total: -2.65 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.08 Total: -6.91 kcal Total: -66.60 7.20 -59.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069774713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.259 kcal (2) G-P(sol) polarization free energy of solvation -66.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds