Wall clock time and date at job start Tue Mar 31 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99673 * 2 1 4 4 H 1.48496 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46990 * 299.99925 * 3 2 1 6 6 H 1.48500 * 109.47062 * 60.00201 * 3 2 1 7 7 C 1.37874 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00339 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99654 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46799 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99824 * 285.61268 * 10 9 7 12 12 C 1.52996 * 109.47132 * 265.25860 * 11 10 9 13 13 C 1.53001 * 117.50197 * 246.14153 * 12 11 10 14 14 C 1.52998 * 117.50087 * 177.47587 * 12 11 10 15 15 C 1.34778 * 119.99829 * 105.61379 * 10 9 7 16 16 O 1.21548 * 119.99986 * 176.91352 * 15 10 9 17 17 C 1.47853 * 120.00083 * 357.18352 * 15 10 9 18 18 C 1.39596 * 120.13727 * 332.55991 * 17 15 10 19 19 C 1.37946 * 119.86723 * 179.71746 * 18 17 15 20 20 C 1.38359 * 120.16074 * 0.55130 * 19 18 17 21 21 C 1.38429 * 120.28226 * 359.72035 * 20 19 18 22 22 Br 1.89096 * 119.93973 * 180.02562 * 21 20 19 23 23 C 1.38075 * 120.11875 * 0.02562 * 21 20 19 24 24 H 0.96996 * 120.00722 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.46893 * 60.00505 * 9 7 2 26 26 H 1.09001 * 109.46887 * 299.99912 * 9 7 2 27 27 H 1.08991 * 109.47431 * 25.26472 * 11 10 9 28 28 H 1.09004 * 109.46998 * 145.26366 * 11 10 9 29 29 H 1.09001 * 115.54888 * 31.80842 * 12 11 10 30 30 H 1.08998 * 117.49936 * 359.97438 * 13 12 11 31 31 H 1.08998 * 117.50119 * 145.02186 * 13 12 11 32 32 H 1.08999 * 117.50330 * 214.98056 * 14 12 11 33 33 H 1.08997 * 117.49739 * 0.02562 * 14 12 11 34 34 H 1.07995 * 120.06581 * 359.97438 * 18 17 15 35 35 H 1.08007 * 119.92034 * 180.27281 * 19 18 17 36 36 H 1.07994 * 119.86535 * 179.74145 * 20 19 18 37 37 H 1.08001 * 120.07693 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.9387 -3.9474 -1.2225 12 6 2.1975 -5.0526 -1.9773 13 6 2.8862 -6.4139 -2.0925 14 6 2.7784 -5.5040 -3.3188 15 6 2.4024 -4.3290 1.1236 16 8 3.1498 -5.2874 1.1091 17 6 1.7071 -3.9526 2.3730 18 6 1.3287 -2.6269 2.5924 19 6 0.6750 -2.2829 3.7575 20 6 0.4042 -3.2463 4.7130 21 6 0.7816 -4.5617 4.5046 22 35 0.4059 -5.8705 5.8167 23 6 1.4318 -4.9198 3.3403 24 1 -0.4851 0.8399 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 3.0142 -3.0630 -1.8550 28 1 3.9388 -4.2937 -0.9612 29 1 1.1122 -5.0447 -1.8759 30 1 3.8677 -6.5221 -1.6310 31 1 2.2542 -7.3016 -2.0675 32 1 2.0754 -5.7934 -4.0999 33 1 3.6889 -5.0139 -3.6634 34 1 1.5435 -1.8729 1.8498 35 1 0.3779 -1.2583 3.9262 36 1 -0.1041 -2.9709 5.6252 37 1 1.7255 -5.9464 3.1782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069776376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:51 Heat of formation + Delta-G solvation = 33.107877 kcal Electronic energy + Delta-G solvation = -21105.330488 eV Core-core repulsion = 17895.323479 eV Total energy + Delta-G solvation = -3210.007009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.95316 -38.06652 -36.75194 -35.11691 -32.68968 -32.09472 -30.88028 -29.21046 -27.72134 -26.54774 -23.50498 -22.64716 -22.06054 -21.88518 -20.45932 -18.93408 -16.78253 -16.59854 -16.29566 -15.79276 -15.03266 -14.65634 -14.50194 -14.21507 -13.97864 -13.47486 -13.26600 -13.02895 -12.75297 -12.47959 -12.01223 -11.72692 -11.39094 -11.25669 -11.21334 -11.04123 -10.98742 -10.65106 -10.42875 -10.20418 -10.14932 -10.00419 -9.79482 -9.58293 -9.16448 -8.81416 -8.69489 -8.21703 -7.82477 -6.38148 -4.48542 1.22969 1.53459 1.78336 3.10845 3.21019 3.24299 3.34471 3.73210 4.13517 4.17757 4.24157 4.91726 5.02258 5.10441 5.16817 5.25678 5.32475 5.41763 5.66611 5.76165 5.77806 5.86653 5.98286 6.12524 6.16872 6.18002 6.24759 6.38616 6.40695 6.55377 6.68705 6.80283 6.86490 7.08801 7.21197 7.40865 7.56251 7.82178 8.23977 8.61216 8.88604 9.20589 10.66327 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.004631 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.619906 B = 6044.193196 C = 8438.402825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.210 3.790 10 N -0.584 5.584 11 C 0.154 3.846 12 C -0.159 4.159 13 C -0.171 4.171 14 C -0.181 4.181 15 C 0.556 3.444 16 O -0.562 6.562 17 C -0.129 4.129 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.074 4.074 21 C -0.115 4.115 22 Br -0.066 7.066 23 C -0.041 4.041 24 H 0.269 0.731 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.202 0.798 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -7.362 5.955 9.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.585 4.585 8 H 0.086 0.914 9 C 0.091 3.909 10 N -0.313 5.313 11 C 0.031 3.969 12 C -0.179 4.179 13 C -0.208 4.208 14 C -0.219 4.219 15 C 0.345 3.655 16 O -0.443 6.443 17 C -0.133 4.133 18 C -0.089 4.089 19 C -0.148 4.148 20 C -0.095 4.095 21 C -0.194 4.194 22 Br 0.019 6.981 23 C -0.061 4.061 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.218 0.782 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.247 -8.205 6.406 10.413 hybrid contribution 0.239 1.278 -0.308 1.336 sum -0.008 -6.927 6.098 9.229 Atomic orbital electron populations 1.69938 1.06014 1.27741 1.47814 1.25002 0.94893 0.99484 0.94158 0.86454 0.80310 0.82918 0.78036 1.19411 1.20632 1.20542 1.21480 0.94076 0.90220 1.52718 0.91445 1.20236 0.88140 0.82692 0.99847 1.48026 1.42168 1.32326 1.08746 1.20852 0.94146 0.96519 0.85408 1.22743 0.99796 0.96472 0.98864 1.22939 1.02455 0.94012 1.01436 1.22917 1.03008 1.04617 0.91344 1.18185 0.81615 0.82298 0.83449 1.90678 1.39310 1.28599 1.85700 1.19993 1.03220 0.94494 0.95629 1.23521 0.90325 0.97644 0.97433 1.21239 1.00322 0.99571 0.93651 1.21254 0.97647 0.91119 0.99433 1.21457 1.08485 0.93620 0.95834 1.96616 1.94524 1.53986 1.52978 1.21069 0.94378 0.99951 0.90739 0.92133 0.94824 0.91896 0.89340 0.91125 0.88014 0.88709 0.89604 0.89222 0.88942 0.78200 0.84821 0.85446 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.03 13.29 55.43 0.74 -21.30 16 2 C 0.07 1.68 5.42 -17.82 -0.10 1.58 16 3 Si 0.90 18.90 29.54 -169.99 -5.02 13.88 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.55 -12.91 7.09 -34.44 -0.24 -13.15 16 8 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.21 4.68 4.65 -5.19 -0.02 4.65 16 10 N -0.58 -11.99 2.51 -176.17 -0.44 -12.43 16 11 C 0.15 2.82 5.54 -4.05 -0.02 2.80 16 12 C -0.16 -2.61 5.98 -90.62 -0.54 -3.15 16 13 C -0.17 -2.53 10.18 -26.69 -0.27 -2.80 16 14 C -0.18 -2.43 10.26 -26.69 -0.27 -2.70 16 15 C 0.56 11.70 7.45 -12.33 -0.09 11.60 16 16 O -0.56 -12.58 16.34 5.32 0.09 -12.50 16 17 C -0.13 -2.52 5.51 -104.97 -0.58 -3.10 16 18 C -0.07 -1.38 7.43 -39.18 -0.29 -1.67 16 19 C -0.13 -2.13 10.03 -39.64 -0.40 -2.53 16 20 C -0.07 -1.12 9.78 -39.47 -0.39 -1.50 16 21 C -0.11 -1.81 6.22 -39.57 -0.25 -2.05 16 22 Br -0.07 -0.88 33.69 -68.01 -2.29 -3.17 16 23 C -0.04 -0.72 9.33 -39.16 -0.37 -1.08 16 24 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.44 4.19 -51.93 -0.22 1.22 16 27 H 0.09 1.61 7.87 -51.93 -0.41 1.20 16 28 H 0.07 1.30 7.36 -51.93 -0.38 0.92 16 29 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.20 4.31 3.33 -52.49 -0.17 4.13 16 35 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.32 7.88 -52.49 -0.41 1.91 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -25.40 333.14 -10.26 -35.66 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.52 Total: 7.95 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -3.83 Total: -13.11 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.29 Total: -33.73 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -2.29 Total: -3.17 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.40 -10.26 -35.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069776376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.769 kcal (2) G-P(sol) polarization free energy of solvation -25.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds