Wall clock time and date at job start Tue Mar 31 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00109 * 2 1 4 4 C 1.53002 * 109.47179 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47220 * 65.00183 * 4 3 2 6 6 C 1.46500 * 119.99792 * 275.00083 * 5 4 3 7 7 C 1.50698 * 109.47295 * 274.99737 * 6 5 4 8 8 H 1.08007 * 119.99512 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00319 * 180.02562 * 7 6 5 10 10 N 1.31507 * 119.99862 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99977 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46947 * 59.99494 * 11 9 7 13 13 H 1.48499 * 109.46989 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46954 * 299.99941 * 11 9 7 15 15 S 1.65599 * 120.00175 * 94.99118 * 5 4 3 16 16 O 1.42103 * 106.39973 * 156.46338 * 15 5 4 17 17 O 1.42096 * 106.39976 * 23.54989 * 15 5 4 18 18 C 1.76198 * 107.22274 * 270.00557 * 15 5 4 19 19 N 1.34164 * 125.99284 * 90.02622 * 18 15 5 20 20 C 1.30471 * 109.26714 * 179.73603 * 19 18 15 21 21 N 1.35154 * 108.71521 * 359.97438 * 20 19 18 22 22 C 1.46500 * 126.40045 * 179.97438 * 21 20 19 23 23 C 1.34792 * 125.99052 * 269.71071 * 18 15 5 24 24 Cl 1.73607 * 126.60109 * 0.23513 * 23 18 15 25 25 H 1.08997 * 109.47375 * 300.00224 * 1 2 3 26 26 H 1.08996 * 109.47263 * 60.00705 * 1 2 3 27 27 H 1.09006 * 109.47203 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47562 * 59.99662 * 3 2 1 29 29 H 1.08997 * 109.46995 * 299.99905 * 3 2 1 30 30 H 1.08994 * 109.47545 * 305.00277 * 4 3 2 31 31 H 1.09003 * 109.47205 * 184.99530 * 4 3 2 32 32 H 1.09008 * 109.47425 * 34.99599 * 6 5 4 33 33 H 1.08997 * 109.47103 * 154.99471 * 6 5 4 34 34 H 0.97005 * 119.99832 * 180.02562 * 10 9 7 35 35 H 1.08003 * 125.63637 * 179.97438 * 20 19 18 36 36 H 1.08999 * 109.47367 * 90.02302 * 22 21 20 37 37 H 1.08998 * 109.46929 * 210.02305 * 22 21 20 38 38 H 1.08996 * 109.46934 * 330.01933 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0014 -0.8955 -1.3758 7 6 5.3000 -1.4250 -0.8240 8 1 6.0336 -0.7425 -0.4209 9 6 5.5519 -2.7805 -0.8345 10 7 4.6588 -3.6115 -1.3257 11 14 7.1618 -3.4367 -0.1511 12 1 7.2817 -3.0605 1.2805 13 1 7.1869 -4.9160 -0.2776 14 1 8.2964 -2.8549 -0.9124 15 16 4.4472 1.5120 -2.5245 16 8 5.3031 0.7102 -3.3269 17 8 4.8441 2.7592 -1.9711 18 6 3.0117 1.8324 -3.4947 19 7 2.1703 2.8659 -3.3403 20 6 1.2243 2.7883 -4.2355 21 7 1.4362 1.6916 -4.9964 22 6 0.6069 1.2360 -6.1148 23 6 2.5697 1.0854 -4.5259 24 17 3.2985 -0.3656 -5.1402 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5684 0.8426 31 1 3.9784 2.1765 0.0901 32 1 3.1684 -1.3223 -0.8171 33 1 3.9136 -1.1718 -2.4265 34 1 4.8359 -4.5652 -1.3328 35 1 0.4071 3.4852 -4.3495 36 1 0.9688 1.6824 -7.0410 37 1 0.6620 0.1499 -6.1891 38 1 -0.4272 1.5366 -5.9464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069817747.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:01 Heat of formation + Delta-G solvation = -47.095416 kcal Electronic energy + Delta-G solvation = -26562.578213 eV Core-core repulsion = 22595.424623 eV Total energy + Delta-G solvation = -3967.153591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.27895 -37.67872 -36.87429 -36.35968 -35.24760 -35.00813 -34.39565 -32.40284 -29.67995 -29.39159 -27.49087 -26.66122 -25.59125 -22.74881 -22.47259 -21.64611 -21.47698 -18.57956 -17.69736 -16.91013 -16.40232 -16.18557 -15.98573 -15.60942 -15.54110 -15.10702 -14.73988 -14.64866 -14.37329 -14.16915 -13.47632 -13.36745 -13.19739 -12.51134 -12.10790 -12.01922 -11.88435 -11.82722 -11.64100 -11.40954 -11.21638 -11.11633 -11.04027 -10.91876 -10.75843 -10.49807 -10.23487 -10.14777 -10.05350 -9.87564 -9.59450 -9.23893 -8.79833 -8.26908 -7.90625 -5.90241 -3.92260 1.08553 1.41826 1.46480 2.54074 2.64121 3.43969 3.46321 3.51544 3.84363 4.22294 4.25195 4.37815 4.51259 4.57686 4.62645 4.71020 4.99767 5.37282 5.44104 5.46122 5.51230 5.60511 5.69873 5.71483 5.79217 5.83828 5.89055 5.96601 6.46058 6.66212 6.71329 7.51300 7.55373 7.58728 7.62818 7.86983 8.08177 8.39770 9.09139 9.70650 11.18322 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.005629 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.934019 B = 4973.404953 C = 5568.436536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.039 3.961 4 C 0.124 3.876 5 N -0.968 5.968 6 C 0.254 3.746 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.275 1.275 15 S 2.704 3.296 16 O -0.927 6.927 17 O -0.964 6.964 18 C -0.528 4.528 19 N -0.406 5.406 20 C 0.189 3.811 21 N -0.454 5.454 22 C 0.062 3.938 23 C 0.122 3.878 24 Cl 0.045 6.955 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.220 0.780 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.452 10.134 -7.313 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C -0.039 4.039 4 C -0.003 4.003 5 N -0.808 5.808 6 C 0.133 3.867 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.535 5.535 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.201 1.201 15 S 2.786 3.214 16 O -0.917 6.917 17 O -0.954 6.954 18 C -0.737 4.737 19 N -0.123 5.123 20 C -0.096 4.096 21 N -0.139 5.139 22 C -0.080 4.080 23 C -0.026 4.026 24 Cl 0.074 6.926 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.237 0.763 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.539 10.513 -7.141 17.853 hybrid contribution -0.503 -1.041 -0.755 1.381 sum -13.042 9.472 -7.896 17.948 Atomic orbital electron populations 1.22652 0.82759 1.02167 0.98825 1.88120 1.18073 1.27184 1.95115 1.23195 0.95747 0.85101 0.99892 1.21316 0.90818 0.99371 0.88752 1.57376 1.81493 1.18926 1.23012 1.19233 0.98163 0.71047 0.98271 1.21480 1.02584 0.92061 1.40061 0.92253 1.24868 0.96751 0.96751 0.95478 1.69927 1.34529 1.02968 1.46115 0.86652 0.84319 0.77494 0.79521 1.20255 1.21405 1.20086 1.02031 0.73025 0.72983 0.73377 1.93650 1.59934 1.68656 1.69454 1.93487 1.80118 1.43923 1.77851 1.34170 1.24198 1.01503 1.13798 1.70413 1.01865 1.19016 1.20965 1.25244 1.01921 0.90835 0.91561 1.45575 1.20039 1.21336 1.26918 1.22261 0.95276 1.02811 0.87613 1.21816 0.90278 0.93165 0.97319 1.98517 1.78353 1.29106 1.86666 0.94788 0.95176 0.90035 0.93098 0.93310 0.88423 0.88612 0.92825 0.94374 0.92951 0.76329 0.89599 0.88871 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.72 9.02 -35.23 -0.32 -7.04 16 3 C 0.04 0.65 6.28 37.16 0.23 0.89 16 4 C 0.12 2.34 6.13 -4.04 -0.02 2.31 16 5 N -0.97 -21.45 2.76 -115.66 -0.32 -21.77 16 6 C 0.25 6.56 4.94 -5.19 -0.03 6.53 16 7 C -0.52 -14.84 9.38 -34.44 -0.32 -15.16 16 8 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 10 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 11 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 S 2.70 59.26 5.77 -107.50 -0.62 58.64 16 16 O -0.93 -22.52 15.29 -57.17 -0.87 -23.40 16 17 O -0.96 -21.90 16.57 -57.17 -0.95 -22.85 16 18 C -0.53 -9.90 7.14 -17.75 -0.13 -10.03 16 19 N -0.41 -6.73 11.03 -13.81 -0.15 -6.88 16 20 C 0.19 2.24 12.57 -90.30 -1.13 1.11 16 21 N -0.45 -5.46 3.15 -122.46 -0.39 -5.85 16 22 C 0.06 0.41 11.05 59.85 0.66 1.08 16 23 C 0.12 2.02 7.46 -16.52 -0.12 1.90 16 24 Cl 0.04 0.78 27.01 -51.86 -1.40 -0.62 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.81 7.92 -51.93 -0.41 0.40 16 30 H 0.10 1.85 8.11 -51.93 -0.42 1.43 16 31 H 0.10 1.65 6.91 -51.93 -0.36 1.30 16 32 H 0.05 1.45 6.60 -51.92 -0.34 1.11 16 33 H 0.04 1.03 7.37 -51.93 -0.38 0.65 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 35 H 0.22 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.64 7.92 -51.93 -0.41 0.23 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 354.02 15.07 5.34 5.34 Total: -1.00 -36.72 354.02 -8.65 -45.37 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -4.83 Total: -4.28 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 0.15 Total: -8.09 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.12 Total: -60.19 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -2.14 Total: -53.28 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 59.26 SS G_CDS: -0.62 Total: 58.64 kcal Atomic # 17 Polarization: 0.78 SS G_CDS: -1.40 Total: -0.62 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.72 -8.65 -45.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069817747.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.727 kcal (2) G-P(sol) polarization free energy of solvation -36.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds