Wall clock time and date at job start Tue Mar 31 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.50700 * 109.47287 * 120.00538 * 2 1 3 5 5 H 1.07998 * 120.00395 * 119.99783 * 4 2 1 6 6 C 1.37877 * 119.99476 * 299.99535 * 4 2 1 7 7 N 1.31517 * 120.00445 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99836 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47002 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47453 * 119.99887 * 8 6 4 11 11 H 1.48505 * 109.47067 * 240.00203 * 8 6 4 12 12 N 1.46505 * 109.46920 * 240.00134 * 2 1 3 13 13 C 1.34770 * 119.99884 * 84.99648 * 12 2 1 14 14 O 1.21652 * 120.00561 * 0.02562 * 13 12 2 15 15 C 1.47035 * 120.00180 * 180.02562 * 13 12 2 16 16 C 1.35870 * 125.43784 * 180.02562 * 15 13 12 17 17 C 1.41571 * 107.73494 * 179.97438 * 16 15 13 18 18 C 1.40119 * 133.35634 * 179.97438 * 17 16 15 19 19 C 1.36412 * 119.84570 * 179.97438 * 18 17 16 20 20 C 1.39041 * 120.60369 * 0.03024 * 19 18 17 21 21 Br 1.89100 * 119.68595 * 179.97438 * 20 19 18 22 22 C 1.37771 * 120.62437 * 0.22379 * 20 19 18 23 23 C 1.39202 * 119.80027 * 359.49845 * 22 20 19 24 24 N 1.37490 * 133.16449 * 180.16149 * 23 22 20 25 25 H 0.96994 * 125.61178 * 0.31436 * 24 23 22 26 26 H 1.08994 * 109.47523 * 59.99705 * 1 2 3 27 27 H 1.09002 * 109.47161 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46626 * 299.99680 * 1 2 3 29 29 H 0.96994 * 120.00174 * 180.02562 * 7 6 4 30 30 H 0.97003 * 119.99938 * 264.99918 * 12 2 1 31 31 H 1.07998 * 126.13311 * 359.96003 * 16 15 13 32 32 H 1.08003 * 120.07991 * 0.02599 * 18 17 16 33 33 H 1.08001 * 119.69878 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.09864 * 179.72672 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.1474 -2.2865 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1678 -1.5867 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3571 14 8 1.8580 1.1622 -2.4117 15 6 2.6364 -0.7115 -3.5579 16 6 2.8084 -0.1437 -4.7802 17 6 3.2931 -1.1446 -5.6563 18 6 3.6458 -1.1475 -7.0124 19 6 4.0931 -2.2969 -7.5950 20 6 4.2025 -3.4693 -6.8555 21 35 4.8249 -5.0481 -7.6897 22 6 3.8568 -3.4928 -5.5221 23 6 3.4033 -2.3306 -4.9044 24 7 2.9967 -2.0439 -3.6227 25 1 2.9672 -2.6735 -2.8854 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.7089 1.1612 3.4844 30 1 2.2490 -1.6318 -1.1527 31 1 2.6105 0.8864 -5.0375 32 1 3.5645 -0.2416 -7.5948 33 1 4.3640 -2.2966 -8.6405 34 1 3.9409 -4.4092 -4.9569 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069841714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:33 Heat of formation + Delta-G solvation = 16.699288 kcal Electronic energy + Delta-G solvation = -19729.030309 eV Core-core repulsion = 16480.197338 eV Total energy + Delta-G solvation = -3248.832971 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 336.021 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.66682 -38.90665 -37.03658 -35.02278 -32.82510 -32.43887 -31.20614 -29.93659 -29.14595 -28.00738 -25.38052 -23.99936 -22.39623 -21.50606 -20.59752 -19.62552 -18.62546 -17.17064 -16.43458 -15.80223 -15.37196 -15.09278 -14.98519 -14.34024 -14.14174 -13.92279 -13.82598 -13.24080 -12.96428 -12.56498 -12.47009 -12.06150 -11.81557 -11.28108 -11.19916 -11.06906 -10.89222 -10.78852 -10.53858 -10.42698 -10.34929 -9.87246 -9.51942 -9.17592 -8.68560 -8.44315 -8.18490 -7.87687 -6.22984 -4.33357 0.52838 1.30734 1.37326 2.08769 2.84880 3.16988 3.24971 3.26977 3.53306 3.75019 3.76604 4.26689 4.44013 4.80177 4.98743 5.03437 5.06693 5.10014 5.25880 5.38966 5.68824 5.79977 5.96104 6.18843 6.34666 6.50673 6.69315 6.78090 6.82565 7.00551 7.20082 7.22873 7.41254 7.56018 7.77155 8.01658 8.40801 8.60496 8.82990 9.34240 10.83008 Molecular weight = 336.02amu Principal moments of inertia in cm(-1) A = 0.022328 B = 0.002422 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.716489 B =11559.099772 C =12593.463764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.701 5.701 13 C 0.564 3.436 14 O -0.530 6.530 15 C 0.049 3.951 16 C -0.127 4.127 17 C -0.100 4.100 18 C -0.055 4.055 19 C -0.128 4.128 20 C -0.068 4.068 21 Br -0.054 7.054 22 C -0.094 4.094 23 C 0.107 3.893 24 N -0.572 5.572 25 H 0.421 0.579 26 H 0.017 0.983 27 H 0.027 0.973 28 H 0.093 0.907 29 H 0.265 0.735 30 H 0.384 0.616 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 -11.150 -20.559 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.348 5.348 13 C 0.348 3.652 14 O -0.407 6.407 15 C -0.062 4.062 16 C -0.153 4.153 17 C -0.106 4.106 18 C -0.074 4.074 19 C -0.148 4.148 20 C -0.148 4.148 21 Br 0.031 6.969 22 C -0.117 4.117 23 C -0.005 4.005 24 N -0.176 5.176 25 H 0.260 0.740 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.216 0.784 31 H 0.176 0.824 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.655 -10.800 -20.535 24.137 hybrid contribution 0.254 -0.987 1.496 1.810 sum 6.909 -11.787 -19.039 23.434 Atomic orbital electron populations 1.22097 0.98085 0.99303 1.01221 1.18863 0.91260 0.94113 0.79467 0.92899 1.21201 1.32804 1.13402 0.90231 0.92042 1.24885 0.94682 0.94922 0.99115 1.69900 1.35577 1.22317 1.24003 0.86369 0.78643 0.79500 0.82438 1.19757 1.20751 1.20780 1.46544 1.64428 1.13238 1.10587 1.17236 0.79292 0.86666 0.82005 1.90825 1.51076 1.14594 1.84212 1.20845 1.05028 0.83188 0.97147 1.20902 1.04220 0.99818 0.90380 1.18317 1.04757 0.93214 0.94304 1.20370 0.96614 0.97997 0.92436 1.20483 1.03083 0.91204 1.00067 1.21282 1.06223 0.92733 0.94609 1.96698 1.87505 1.32320 1.80350 1.19901 1.02150 0.96376 0.93264 1.18103 1.01980 0.95409 0.84976 1.42065 1.56081 1.09924 1.09560 0.73985 0.96414 0.95378 0.88860 0.92448 0.78374 0.82383 0.84836 0.85065 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.45 2.56 -69.08 -0.18 6.28 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -13.73 8.73 -34.44 -0.30 -14.03 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.11 11.32 55.43 0.63 -23.49 16 8 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.70 -13.85 5.07 -56.13 -0.28 -14.14 16 13 C 0.56 10.99 7.76 -12.70 -0.10 10.90 16 14 O -0.53 -12.27 16.50 5.23 0.09 -12.18 16 15 C 0.05 0.76 6.97 -82.28 -0.57 0.18 16 16 C -0.13 -1.82 10.53 -39.16 -0.41 -2.24 16 17 C -0.10 -1.28 6.16 -106.93 -0.66 -1.94 16 18 C -0.05 -0.57 10.06 -39.53 -0.40 -0.96 16 19 C -0.13 -1.24 9.70 -39.94 -0.39 -1.62 16 20 C -0.07 -0.70 6.22 -39.45 -0.25 -0.94 16 21 Br -0.05 -0.49 33.68 -68.01 -2.29 -2.78 16 22 C -0.09 -1.01 9.80 -39.39 -0.39 -1.40 16 23 C 0.11 1.32 7.25 -83.98 -0.61 0.71 16 24 N -0.57 -7.17 6.08 -7.35 -0.04 -7.21 16 25 H 0.42 4.26 8.12 -40.82 -0.33 3.93 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.38 6.37 7.59 -40.82 -0.31 6.06 16 31 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -29.55 317.71 -9.56 -39.12 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.43 Total: 7.49 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -4.00 Total: -6.62 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.30 Total: -44.83 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.29 Total: -2.78 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.55 -9.56 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069841714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.816 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds