Wall clock time and date at job start Tue Mar 31 2020 05:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46713 * 2 1 4 4 C 1.50694 * 109.47317 * 240.00307 * 2 1 3 5 5 H 1.08000 * 119.99611 * 239.99758 * 4 2 1 6 6 C 1.37877 * 120.00416 * 59.99976 * 4 2 1 7 7 N 1.31519 * 119.99599 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00072 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47445 * 59.99869 * 8 6 4 10 10 H 1.48502 * 109.47138 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47185 * 299.99641 * 8 6 4 12 12 N 1.46497 * 109.46857 * 119.99650 * 2 1 3 13 13 C 1.34780 * 120.00120 * 274.99995 * 12 2 1 14 14 O 1.21647 * 120.00112 * 0.02562 * 13 12 2 15 15 C 1.47031 * 119.99881 * 180.02562 * 13 12 2 16 16 C 1.35870 * 125.43475 * 180.02562 * 15 13 12 17 17 C 1.41572 * 107.73527 * 180.02562 * 16 15 13 18 18 C 1.40119 * 133.35660 * 180.02562 * 17 16 15 19 19 C 1.36412 * 119.84570 * 179.97438 * 18 17 16 20 20 C 1.39041 * 120.60369 * 0.03024 * 19 18 17 21 21 Br 1.89100 * 119.68595 * 179.97438 * 20 19 18 22 22 C 1.37771 * 120.62437 * 0.22379 * 20 19 18 23 23 C 1.39202 * 119.80027 * 359.49845 * 22 20 19 24 24 N 1.37491 * 133.16457 * 180.20719 * 23 22 20 25 25 H 0.96994 * 125.61191 * 0.26648 * 24 23 22 26 26 H 1.08998 * 109.47167 * 300.00157 * 1 2 3 27 27 H 1.09006 * 109.46634 * 60.00325 * 1 2 3 28 28 H 1.09005 * 109.46713 * 180.02562 * 1 2 3 29 29 H 0.96994 * 119.99431 * 180.02562 * 7 6 4 30 30 H 0.97003 * 119.99738 * 95.00655 * 12 2 1 31 31 H 1.08005 * 126.13652 * 0.02562 * 16 15 13 32 32 H 1.08003 * 120.07991 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.69878 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.09875 * 179.74512 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3216 -1.1202 -4.0078 9 1 1.8261 -2.5202 -4.0077 10 1 1.8262 -0.4205 -5.2204 11 1 3.8066 -1.1207 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8573 1.1621 2.4119 15 6 2.6376 -0.7111 3.5576 16 6 2.8088 -0.1435 4.7801 17 6 3.2950 -1.1440 5.6558 18 6 3.6478 -1.1469 7.0119 19 6 4.0958 -2.2962 7.5943 20 6 4.2070 -3.4681 6.8544 21 35 4.8317 -5.0463 7.6879 22 6 3.8711 -3.4890 5.5184 23 6 3.4060 -2.3299 4.9037 24 7 2.9985 -2.0434 3.6222 25 1 2.9697 -2.6728 2.8847 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.7083 1.1609 -3.4843 30 1 2.2491 -1.6317 1.1526 31 1 2.6097 0.8863 5.0378 32 1 3.5652 -0.2413 7.5946 33 1 4.3675 -2.2956 8.6396 34 1 3.9646 -4.4030 4.9507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069841715.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:37 Heat of formation + Delta-G solvation = 16.770688 kcal Electronic energy + Delta-G solvation = -19728.759200 eV Core-core repulsion = 16479.929325 eV Total energy + Delta-G solvation = -3248.829875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 336.021 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.66679 -38.90664 -37.03663 -35.02172 -32.82446 -32.43778 -31.20621 -29.93611 -29.14490 -28.00685 -25.37660 -23.99903 -22.39622 -21.50550 -20.59626 -19.62509 -18.62532 -17.17021 -16.43272 -15.79784 -15.36936 -15.09277 -14.98399 -14.34573 -14.14304 -13.92173 -13.82719 -13.24304 -12.96380 -12.55961 -12.46739 -12.05963 -11.80640 -11.28170 -11.20747 -11.05514 -10.88800 -10.78823 -10.53905 -10.45372 -10.33907 -9.87254 -9.51750 -9.19104 -8.67763 -8.44307 -8.18411 -7.87677 -6.22484 -4.33079 0.52831 1.30724 1.37317 2.08765 2.84857 3.18866 3.24771 3.25303 3.53303 3.75026 3.76586 4.26967 4.44006 4.80170 4.98743 5.03436 5.06693 5.10265 5.25872 5.38972 5.68822 5.79956 5.96096 6.18834 6.34658 6.50660 6.69428 6.78099 6.82733 7.00596 7.20121 7.22961 7.41235 7.55891 7.77272 8.01913 8.40869 8.60388 8.82937 9.34377 10.83439 Molecular weight = 336.02amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.002422 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.986858 B =11558.136135 C =12593.347016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.053 0.947 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.564 3.436 14 O -0.530 6.530 15 C 0.049 3.951 16 C -0.127 4.127 17 C -0.100 4.100 18 C -0.055 4.055 19 C -0.128 4.128 20 C -0.068 4.068 21 Br -0.054 7.054 22 C -0.094 4.094 23 C 0.107 3.893 24 N -0.572 5.572 25 H 0.421 0.579 26 H 0.017 0.983 27 H 0.093 0.907 28 H 0.027 0.973 29 H 0.267 0.733 30 H 0.384 0.616 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.778 -11.131 20.534 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.071 0.929 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.348 5.348 13 C 0.348 3.652 14 O -0.407 6.407 15 C -0.062 4.062 16 C -0.153 4.153 17 C -0.106 4.106 18 C -0.074 4.074 19 C -0.148 4.148 20 C -0.148 4.148 21 Br 0.031 6.969 22 C -0.117 4.117 23 C -0.005 4.005 24 N -0.176 5.176 25 H 0.260 0.740 26 H 0.036 0.964 27 H 0.111 0.889 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.216 0.784 31 H 0.176 0.824 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.661 -10.773 20.504 24.101 hybrid contribution 0.267 -1.006 -1.487 1.815 sum 6.928 -11.780 19.018 23.418 Atomic orbital electron populations 1.22100 0.98095 0.99294 1.01215 1.18850 0.91249 0.94096 0.79436 0.92910 1.21126 1.32961 1.13446 0.90265 0.92151 1.24880 0.94673 0.94915 0.99089 1.69882 1.35429 1.22271 1.24221 0.86478 0.79198 0.79565 0.81694 1.20129 1.21002 1.20110 1.46545 1.64435 1.13233 1.10591 1.17236 0.79294 0.86663 0.82004 1.90824 1.51060 1.14612 1.84202 1.20843 1.05044 0.83176 0.97145 1.20903 1.04220 0.99822 0.90374 1.18317 1.04755 0.93207 0.94312 1.20370 0.96619 0.97996 0.92432 1.20483 1.03083 0.91188 1.00083 1.21282 1.06255 0.92756 0.94554 1.96698 1.87437 1.32363 1.80375 1.19901 1.02109 0.96445 0.93234 1.18103 1.01922 0.95452 0.84994 1.42065 1.56074 1.09934 1.09557 0.73987 0.96423 0.88856 0.95384 0.92333 0.78380 0.82381 0.84836 0.85065 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.48 2.56 -69.08 -0.18 6.30 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.13 11.32 55.43 0.63 -23.51 16 8 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.70 -13.86 5.07 -56.13 -0.28 -14.15 16 13 C 0.56 11.00 7.76 -12.69 -0.10 10.90 16 14 O -0.53 -12.27 16.50 5.24 0.09 -12.18 16 15 C 0.05 0.76 6.97 -82.29 -0.57 0.18 16 16 C -0.13 -1.83 10.53 -39.16 -0.41 -2.24 16 17 C -0.10 -1.28 6.16 -106.93 -0.66 -1.94 16 18 C -0.05 -0.57 10.06 -39.53 -0.40 -0.96 16 19 C -0.13 -1.24 9.70 -39.94 -0.39 -1.62 16 20 C -0.07 -0.70 6.22 -39.45 -0.25 -0.94 16 21 Br -0.05 -0.49 33.68 -68.01 -2.29 -2.78 16 22 C -0.09 -1.01 9.80 -39.39 -0.39 -1.40 16 23 C 0.11 1.32 7.25 -83.98 -0.61 0.71 16 24 N -0.57 -7.17 6.08 -7.35 -0.04 -7.21 16 25 H 0.42 4.26 8.12 -40.82 -0.33 3.93 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.38 6.37 7.59 -40.82 -0.31 6.06 16 31 H 0.16 2.14 8.06 -52.48 -0.42 1.72 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -29.53 317.72 -9.56 -39.09 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -3.43 Total: 7.55 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -4.00 Total: -6.63 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.30 Total: -44.86 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.29 Total: -2.78 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.53 -9.56 -39.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069841715.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.866 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds