Wall clock time and date at job start Tue Mar 31 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48506 * 109.47156 * 269.99642 * 3 2 1 5 5 H 1.48497 * 109.47175 * 30.00040 * 3 2 1 6 6 H 1.48498 * 109.46951 * 150.00049 * 3 2 1 7 7 C 1.37875 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99998 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46973 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47029 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54370 * 63.87027 * 11 10 9 13 13 O 1.42105 * 110.54445 * 287.12243 * 11 10 9 14 14 N 1.65604 * 104.45098 * 175.49529 * 11 10 9 15 15 C 1.46496 * 119.99623 * 65.19214 * 14 11 10 16 16 H 1.08999 * 109.47676 * 334.82446 * 15 14 11 17 17 C 1.50695 * 109.47290 * 94.83284 * 15 14 11 18 18 C 1.38240 * 120.00108 * 39.86186 * 17 15 14 19 19 C 1.38237 * 120.00089 * 180.02562 * 18 17 15 20 20 C 1.38235 * 119.99776 * 0.06716 * 19 18 17 21 21 C 1.38232 * 120.00253 * 0.02562 * 20 19 18 22 22 C 1.38235 * 120.00116 * 359.97438 * 21 20 19 23 23 C 1.53003 * 109.46688 * 214.82856 * 15 14 11 24 24 C 1.54269 * 110.03135 * 174.07858 * 23 15 14 25 25 C 1.54965 * 104.15912 * 217.13808 * 24 23 15 26 26 C 1.54882 * 102.77706 * 37.88907 * 25 24 23 27 27 C 1.53875 * 110.03354 * 56.86193 * 23 15 14 28 28 H 0.97006 * 119.99673 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47046 * 59.99837 * 9 7 2 30 30 H 1.08998 * 109.47003 * 299.99744 * 9 7 2 31 31 H 1.08997 * 109.47349 * 59.99406 * 10 9 7 32 32 H 1.09003 * 109.47254 * 299.99786 * 10 9 7 33 33 H 0.96994 * 119.99751 * 245.18984 * 14 11 10 34 34 H 1.08001 * 119.99558 * 0.10729 * 18 17 15 35 35 H 1.07995 * 120.00419 * 180.34582 * 19 18 17 36 36 H 1.07999 * 119.99833 * 179.97438 * 20 19 18 37 37 H 1.08005 * 120.00280 * 179.97438 * 21 20 19 38 38 H 1.08004 * 120.00177 * 179.97438 * 22 21 20 39 39 H 1.08999 * 110.02209 * 295.47007 * 23 15 14 40 40 H 1.09001 * 110.48575 * 335.78675 * 24 23 15 41 41 H 1.09004 * 110.48571 * 98.42965 * 24 23 15 42 42 H 1.08998 * 110.71754 * 279.56824 * 25 24 23 43 43 H 1.09000 * 110.92002 * 156.29970 * 25 24 23 44 44 H 1.09000 * 110.48192 * 203.40476 * 26 25 24 45 45 H 1.08999 * 110.60137 * 80.82304 * 26 25 24 46 46 H 1.08996 * 110.03540 * 238.56378 * 27 23 15 47 47 H 1.08997 * 110.03270 * 0.02562 * 27 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 16 1.3383 -5.2330 -0.0021 12 8 0.5820 -5.3717 -1.1971 13 8 0.7491 -5.4692 1.2693 14 7 2.5163 -6.3902 -0.1277 15 6 3.4875 -6.5672 0.9547 16 1 3.5858 -5.6349 1.5108 17 6 3.0141 -7.6574 1.8811 18 6 2.4233 -8.7954 1.3644 19 6 1.9886 -9.7952 2.2143 20 6 2.1434 -9.6564 3.5810 21 6 2.7325 -8.5176 4.0977 22 6 3.1672 -7.5178 3.2479 23 6 4.8448 -6.9539 0.3637 24 6 5.9122 -6.9988 1.4765 25 6 7.1902 -6.4434 0.7985 26 6 6.6349 -5.3182 -0.1095 27 6 5.3041 -5.8861 -0.6447 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5563 -0.8919 30 1 0.6241 -2.5575 0.8880 31 1 2.8713 -3.6047 0.8889 32 1 2.8726 -3.6039 -0.8910 33 1 2.5631 -6.9508 -0.9179 34 1 2.3026 -8.9038 0.2967 35 1 1.5321 -10.6867 1.8105 36 1 1.8034 -10.4373 4.2450 37 1 2.8531 -8.4090 5.1655 38 1 3.6271 -6.6279 3.6516 39 1 4.7754 -7.9249 -0.1265 40 1 5.6181 -6.3649 2.3130 41 1 6.0717 -8.0239 1.8110 42 1 7.6774 -7.2154 0.2030 43 1 7.8788 -6.0373 1.5396 44 1 7.3220 -5.1175 -0.9315 45 1 6.4577 -4.4112 0.4685 46 1 5.4585 -6.3392 -1.6239 47 1 4.5604 -5.0923 -0.7127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069846289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:39 Heat of formation + Delta-G solvation = -74.922961 kcal Electronic energy + Delta-G solvation = -27964.860911 eV Core-core repulsion = 24238.306915 eV Total energy + Delta-G solvation = -3726.553996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.98340 -38.12773 -36.54594 -35.42969 -35.03917 -33.90297 -31.22321 -31.17935 -30.73923 -28.98027 -28.65681 -25.62026 -24.76522 -22.70040 -21.67258 -21.40619 -20.71504 -19.79916 -18.84636 -17.44300 -17.15433 -16.56860 -16.34170 -15.77650 -15.41002 -15.18620 -15.02766 -14.82466 -14.54627 -14.23250 -13.67422 -13.48711 -13.41403 -13.28924 -12.83213 -12.53416 -12.32987 -12.10184 -11.77602 -11.65824 -11.55699 -11.46693 -11.23831 -11.19724 -11.15348 -11.08449 -11.02993 -10.96516 -10.91617 -10.76441 -10.54990 -10.39300 -10.38151 -9.80926 -9.52693 -9.06445 -8.88345 -8.68525 -8.50740 -6.12753 -4.18377 0.78385 1.36091 1.43332 3.12831 3.25500 3.31850 3.34307 3.78661 4.22865 4.36688 4.39981 4.47007 4.50802 4.72326 4.80191 4.86573 4.99205 5.03025 5.11178 5.20587 5.22609 5.32073 5.32907 5.43714 5.45458 5.53342 5.56392 5.60462 5.64549 5.67441 5.78318 5.81216 5.89315 5.98880 6.00935 6.04017 6.14157 6.22619 6.24618 6.46031 6.49133 6.51088 6.65598 7.00733 7.08375 7.29475 7.35850 7.80003 8.16863 8.84936 9.46405 10.98295 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011648 B = 0.003791 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.359850 B = 7384.860868 C = 8548.451907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.591 4.591 11 S 2.587 3.413 12 O -0.967 6.967 13 O -0.959 6.959 14 N -1.119 6.119 15 C 0.201 3.799 16 H 0.093 0.907 17 C -0.085 4.085 18 C -0.102 4.102 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.104 4.104 23 C -0.090 4.090 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.125 4.125 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.412 0.588 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.989 -18.700 3.490 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.724 4.724 11 S 2.684 3.316 12 O -0.957 6.957 13 O -0.949 6.949 14 N -0.874 5.874 15 C 0.093 3.907 16 H 0.111 0.889 17 C -0.087 4.087 18 C -0.120 4.120 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.123 4.123 23 C -0.110 4.110 24 C -0.154 4.154 25 C -0.162 4.162 26 C -0.165 4.165 27 C -0.163 4.163 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.246 0.754 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.855 -18.671 3.698 22.424 hybrid contribution 0.912 0.989 -0.364 1.394 sum 12.767 -17.682 3.334 22.062 Atomic orbital electron populations 1.69959 1.06120 1.27185 1.49554 1.25064 0.94955 0.99517 0.94918 0.86483 0.79724 0.82922 0.78238 1.20469 1.21009 1.19747 1.20989 0.93028 0.89727 1.52142 0.92039 1.18948 0.92650 0.90528 0.98863 1.30494 1.13766 1.18244 1.09939 1.05761 0.74762 0.76677 0.74369 1.93555 1.67979 1.85916 1.48246 1.93571 1.74375 1.84028 1.42923 1.55951 1.49609 1.53637 1.28222 1.19743 0.87831 0.96899 0.86218 0.88901 1.20157 0.98787 0.95678 0.94094 1.20880 0.98102 0.93337 0.99718 1.21095 1.00311 0.99004 0.93712 1.21102 0.99783 0.97995 0.95313 1.21084 0.99013 0.94103 0.99558 1.20998 0.99712 0.98901 0.92650 1.22055 0.92757 0.99738 0.96435 1.22407 0.94221 1.01337 0.97483 1.22500 0.97059 0.97990 0.98627 1.22387 0.96512 0.98398 0.99201 1.22269 0.97464 0.98315 0.98258 0.92530 0.94753 0.95001 0.86407 0.86056 0.75428 0.86367 0.86366 0.86443 0.86181 0.86011 0.90238 0.91102 0.91479 0.91735 0.91635 0.91768 0.91237 0.91531 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 10 C -0.59 -11.12 5.57 37.16 0.21 -10.91 16 11 S 2.59 46.36 5.38 -107.50 -0.58 45.78 16 12 O -0.97 -20.27 18.08 -57.54 -1.04 -21.31 16 13 O -0.96 -20.08 17.76 -57.54 -1.02 -21.10 16 14 N -1.12 -14.23 3.84 -5.88 -0.02 -14.25 16 15 C 0.20 2.30 1.57 -69.09 -0.11 2.20 16 16 H 0.09 1.07 7.04 -51.93 -0.37 0.71 16 17 C -0.09 -1.04 4.47 -104.62 -0.47 -1.51 16 18 C -0.10 -1.21 9.32 -39.58 -0.37 -1.58 16 19 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 20 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 21 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 22 C -0.10 -1.23 9.30 -39.58 -0.37 -1.60 16 23 C -0.09 -0.82 2.59 -89.50 -0.23 -1.05 16 24 C -0.12 -0.97 5.69 -25.03 -0.14 -1.12 16 25 C -0.12 -0.98 6.91 -24.70 -0.17 -1.15 16 26 C -0.13 -1.14 6.83 -25.08 -0.17 -1.31 16 27 C -0.13 -1.18 6.16 -25.61 -0.16 -1.34 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.12 1.97 7.59 -51.93 -0.39 1.58 16 32 H 0.12 2.02 7.66 -51.92 -0.40 1.62 16 33 H 0.41 4.30 8.60 -34.47 -0.30 4.00 16 34 H 0.12 1.24 7.56 -52.49 -0.40 0.84 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.12 1.26 8.04 -52.48 -0.42 0.84 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.60 7.64 -51.93 -0.40 0.20 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.77 6.48 -51.93 -0.34 0.43 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -35.04 391.40 -12.39 -47.44 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.62 Total: 4.13 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: -3.72 Total: -36.94 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.71 Total: -39.95 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -2.06 Total: -42.42 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 46.36 SS G_CDS: -0.58 Total: 45.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.04 -12.39 -47.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069846289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.488 kcal (2) G-P(sol) polarization free energy of solvation -35.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds