Wall clock time and date at job start Tue Mar 31 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99837 * 2 1 4 4 H 1.48502 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47114 * 300.00017 * 3 2 1 6 6 H 1.48500 * 109.46970 * 60.00411 * 3 2 1 7 7 C 1.37876 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47110 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47259 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54262 * 68.37802 * 11 10 9 13 13 O 1.42106 * 110.54608 * 291.62851 * 11 10 9 14 14 N 1.65593 * 104.45212 * 180.02562 * 11 10 9 15 15 C 1.46509 * 120.00023 * 65.24129 * 14 11 10 16 16 H 1.08997 * 109.46624 * 336.21209 * 15 14 11 17 17 C 1.50694 * 109.46830 * 216.21186 * 15 14 11 18 18 C 1.38234 * 120.00254 * 324.70807 * 17 15 14 19 19 C 1.38244 * 120.00016 * 180.36607 * 18 17 15 20 20 C 1.38233 * 119.99914 * 359.85337 * 19 18 17 21 21 C 1.38233 * 120.00115 * 0.12691 * 20 19 18 22 22 C 1.38235 * 120.00108 * 359.95573 * 21 20 19 23 23 C 1.52996 * 109.46934 * 96.21078 * 15 14 11 24 24 C 1.54265 * 110.02847 * 176.32321 * 23 15 14 25 25 C 1.54894 * 104.19717 * 217.10345 * 24 23 15 26 26 C 1.54888 * 102.74714 * 37.94183 * 25 24 23 27 27 C 1.53874 * 110.03407 * 59.15828 * 23 15 14 28 28 H 0.97004 * 120.00357 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46710 * 60.00359 * 9 7 2 30 30 H 1.08996 * 109.47273 * 300.00437 * 9 7 2 31 31 H 1.09010 * 109.46903 * 60.00254 * 10 9 7 32 32 H 1.08996 * 109.47557 * 300.00444 * 10 9 7 33 33 H 0.97001 * 120.00321 * 245.24460 * 14 11 10 34 34 H 1.08001 * 119.99969 * 0.28801 * 18 17 15 35 35 H 1.08004 * 119.99792 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.99574 * 180.11043 * 20 19 18 37 37 H 1.08002 * 119.99857 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00327 * 179.97438 * 22 21 20 39 39 H 1.08997 * 110.01833 * 297.76302 * 23 15 14 40 40 H 1.08995 * 110.49009 * 335.78468 * 24 23 15 41 41 H 1.09009 * 110.48593 * 98.42698 * 24 23 15 42 42 H 1.09004 * 110.75620 * 279.62906 * 25 24 23 43 43 H 1.08994 * 110.75700 * 156.25708 * 25 24 23 44 44 H 1.08994 * 110.48842 * 203.37625 * 26 25 24 45 45 H 1.09005 * 110.59346 * 80.78779 * 26 25 24 46 46 H 1.09000 * 110.03244 * 238.56561 * 27 23 15 47 47 H 1.09002 * 110.03162 * 359.95025 * 27 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 16 1.3384 -5.2330 -0.0011 12 8 0.6631 -5.4195 -1.2374 13 8 0.6657 -5.4199 1.2366 14 7 2.5205 -6.3926 -0.0018 15 6 3.4164 -6.5262 1.1497 16 1 3.4589 -5.5797 1.6886 17 6 4.7973 -6.8945 0.6717 18 6 4.9513 -7.7239 -0.4234 19 6 6.2180 -8.0679 -0.8572 20 6 7.3307 -7.5799 -0.1979 21 6 7.1766 -6.7501 0.8969 22 6 5.9100 -6.4075 1.3318 23 6 2.8903 -7.6202 2.0809 24 6 3.8725 -7.8356 3.2508 25 6 3.8391 -9.3642 3.4984 26 6 3.7385 -9.9406 2.0643 27 6 2.8052 -8.9586 1.3264 28 1 -0.4851 0.8401 0.0004 29 1 0.6241 -2.5566 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.8727 -3.6046 0.8878 32 1 2.8713 -3.6039 -0.8922 33 1 2.6199 -6.9834 -0.7647 34 1 4.0820 -8.1043 -0.9392 35 1 6.3383 -8.7163 -1.7125 36 1 8.3203 -7.8472 -0.5380 37 1 8.0460 -6.3691 1.4123 38 1 5.7896 -5.7595 2.1874 39 1 1.9078 -7.3440 2.4633 40 1 4.8762 -7.5165 2.9700 41 1 3.5342 -7.2981 4.1368 42 1 2.9651 -9.6410 4.0881 43 1 4.7559 -9.6969 3.9850 44 1 3.3025 -10.9394 2.0842 45 1 4.7199 -9.9631 1.5904 46 1 1.7814 -9.3323 1.3435 47 1 3.1378 -8.8285 0.2966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069846291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:42 Heat of formation + Delta-G solvation = -67.413644 kcal Electronic energy + Delta-G solvation = -27989.026616 eV Core-core repulsion = 24262.798248 eV Total energy + Delta-G solvation = -3726.228368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.43264 -37.90055 -36.56034 -35.44828 -35.06050 -33.89552 -31.45121 -31.16009 -30.80371 -29.04681 -28.61868 -25.61266 -24.86410 -22.87463 -21.68033 -21.64107 -20.65369 -19.68669 -18.69920 -17.82270 -17.12284 -16.42557 -16.02688 -15.95865 -15.69483 -15.29591 -15.03332 -14.76417 -14.55422 -14.38507 -13.77261 -13.65189 -13.33073 -13.16780 -12.98659 -12.56122 -12.52189 -12.01131 -11.76651 -11.69988 -11.55880 -11.48247 -11.32918 -11.24151 -11.13972 -11.10073 -11.01672 -10.97976 -10.90886 -10.65312 -10.45667 -10.38338 -10.28053 -9.79593 -9.48999 -9.05062 -9.03390 -8.82619 -8.50795 -6.12605 -4.18015 0.77836 1.19400 1.24232 3.11067 3.25156 3.32486 3.35915 3.63594 4.21086 4.36669 4.44394 4.46932 4.58020 4.68082 4.69646 4.80718 4.83495 4.92772 5.03551 5.22306 5.22812 5.27073 5.34931 5.38613 5.43344 5.59774 5.63495 5.64735 5.67134 5.71352 5.78018 5.83026 5.84260 5.92433 5.94823 6.01136 6.17472 6.26053 6.27690 6.35510 6.42203 6.46990 6.50878 6.82599 7.06073 7.30050 7.36003 7.80702 8.17538 8.85644 9.46851 10.98472 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.003478 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.837278 B = 8047.855754 C = 8938.981155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.590 3.410 12 O -0.967 6.967 13 O -0.963 6.963 14 N -1.120 6.120 15 C 0.200 3.800 16 H 0.095 0.905 17 C -0.075 4.075 18 C -0.109 4.109 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.111 4.111 23 C -0.104 4.104 24 C -0.128 4.128 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.123 4.123 28 H 0.264 0.736 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.411 0.589 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.874 -19.824 3.395 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.688 3.312 12 O -0.958 6.958 13 O -0.953 6.953 14 N -0.876 5.876 15 C 0.092 3.908 16 H 0.112 0.888 17 C -0.076 4.076 18 C -0.127 4.127 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.135 4.135 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.166 4.166 25 C -0.159 4.159 26 C -0.159 4.159 27 C -0.161 4.161 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.245 0.755 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.723 -19.795 3.540 23.796 hybrid contribution 1.118 1.027 -0.404 1.571 sum 13.841 -18.768 3.136 23.529 Atomic orbital electron populations 1.69961 1.06112 1.27078 1.49685 1.25064 0.94959 0.99531 0.94918 0.86427 0.79952 0.83219 0.77772 1.19641 1.20792 1.20788 1.21039 0.93090 0.89745 1.51985 0.92000 1.18964 0.92674 0.90588 0.98875 1.30457 1.13702 1.18115 1.10061 1.05648 0.74706 0.76587 0.74258 1.93554 1.71542 1.85341 1.45316 1.93547 1.71361 1.84900 1.45453 1.56001 1.52729 1.52158 1.26761 1.19667 0.85741 0.99491 0.85918 0.88752 1.19892 0.94455 0.97467 0.95802 1.20957 0.97232 0.97858 0.96653 1.21112 0.92510 1.00180 0.99824 1.21129 0.98603 0.98174 0.96252 1.21110 0.97097 0.98236 0.97041 1.21033 0.92008 0.99980 0.99938 1.22275 1.00550 0.94757 0.94862 1.22604 0.99974 0.96383 0.97674 1.22438 1.01256 0.95432 0.96777 1.22326 0.99653 0.98213 0.95728 1.22289 0.99679 0.94318 0.99799 0.92588 0.94875 0.94805 0.86435 0.86065 0.75473 0.85948 0.86182 0.86340 0.86066 0.85636 0.88692 0.90526 0.91435 0.91668 0.91960 0.92231 0.91831 0.91922 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.25 5.91 37.16 0.22 -11.03 16 11 S 2.59 45.76 5.37 -107.50 -0.58 45.18 16 12 O -0.97 -20.02 18.08 -57.54 -1.04 -21.07 16 13 O -0.96 -19.35 17.30 -57.54 -1.00 -20.34 16 14 N -1.12 -14.44 4.81 -5.88 -0.03 -14.47 16 15 C 0.20 2.32 2.21 -69.08 -0.15 2.16 16 16 H 0.09 1.08 7.09 -51.93 -0.37 0.71 16 17 C -0.07 -0.77 4.12 -104.63 -0.43 -1.20 16 18 C -0.11 -1.04 7.80 -39.58 -0.31 -1.35 16 19 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 20 C -0.12 -1.05 10.05 -39.59 -0.40 -1.44 16 21 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 22 C -0.11 -1.07 7.71 -39.58 -0.31 -1.37 16 23 C -0.10 -1.17 3.01 -89.50 -0.27 -1.44 16 24 C -0.13 -1.23 6.17 -25.07 -0.15 -1.39 16 25 C -0.12 -1.06 6.91 -24.74 -0.17 -1.23 16 26 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 27 C -0.12 -1.25 5.64 -25.61 -0.14 -1.39 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.12 1.99 7.47 -51.92 -0.39 1.60 16 32 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 33 H 0.41 4.52 6.46 -34.47 -0.22 4.30 16 34 H 0.12 1.05 5.08 -52.49 -0.27 0.78 16 35 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 1.06 7.89 -52.49 -0.41 0.65 16 39 H 0.09 1.26 7.63 -51.93 -0.40 0.86 16 40 H 0.08 0.69 4.88 -51.93 -0.25 0.44 16 41 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.66 3.96 -51.93 -0.21 0.46 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -34.35 379.67 -11.97 -46.31 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.13 Total: 4.55 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: -3.63 Total: -36.32 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.71 Total: -40.20 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -2.04 Total: -41.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 45.76 SS G_CDS: -0.58 Total: 45.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.35 -11.97 -46.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069846291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.100 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds