Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99837 * 2 1 4 4 H 1.48502 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47114 * 300.00017 * 3 2 1 6 6 H 1.48500 * 109.46970 * 60.00411 * 3 2 1 7 7 C 1.37876 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47110 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47259 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54262 * 68.37802 * 11 10 9 13 13 O 1.42106 * 110.54608 * 291.62851 * 11 10 9 14 14 N 1.65593 * 104.45212 * 180.02562 * 11 10 9 15 15 C 1.46509 * 120.00023 * 65.24129 * 14 11 10 16 16 H 1.08997 * 109.46624 * 336.21209 * 15 14 11 17 17 C 1.50694 * 109.46830 * 216.21186 * 15 14 11 18 18 C 1.38234 * 120.00254 * 324.70807 * 17 15 14 19 19 C 1.38244 * 120.00016 * 180.36607 * 18 17 15 20 20 C 1.38233 * 119.99914 * 359.85337 * 19 18 17 21 21 C 1.38233 * 120.00115 * 0.12691 * 20 19 18 22 22 C 1.38235 * 120.00108 * 359.95573 * 21 20 19 23 23 C 1.52996 * 109.46934 * 96.21078 * 15 14 11 24 24 C 1.54265 * 110.02847 * 176.32321 * 23 15 14 25 25 C 1.54894 * 104.19717 * 217.10345 * 24 23 15 26 26 C 1.54888 * 102.74714 * 37.94183 * 25 24 23 27 27 C 1.53874 * 110.03407 * 59.15828 * 23 15 14 28 28 H 0.97004 * 120.00357 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46710 * 60.00359 * 9 7 2 30 30 H 1.08996 * 109.47273 * 300.00437 * 9 7 2 31 31 H 1.09010 * 109.46903 * 60.00254 * 10 9 7 32 32 H 1.08996 * 109.47557 * 300.00444 * 10 9 7 33 33 H 0.97001 * 120.00321 * 245.24460 * 14 11 10 34 34 H 1.08001 * 119.99969 * 0.28801 * 18 17 15 35 35 H 1.08004 * 119.99792 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.99574 * 180.11043 * 20 19 18 37 37 H 1.08002 * 119.99857 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00327 * 179.97438 * 22 21 20 39 39 H 1.08997 * 110.01833 * 297.76302 * 23 15 14 40 40 H 1.08995 * 110.49009 * 335.78468 * 24 23 15 41 41 H 1.09009 * 110.48593 * 98.42698 * 24 23 15 42 42 H 1.09004 * 110.75620 * 279.62906 * 25 24 23 43 43 H 1.08994 * 110.75700 * 156.25708 * 25 24 23 44 44 H 1.08994 * 110.48842 * 203.37625 * 26 25 24 45 45 H 1.09005 * 110.59346 * 80.78779 * 26 25 24 46 46 H 1.09000 * 110.03244 * 238.56561 * 27 23 15 47 47 H 1.09002 * 110.03162 * 359.95025 * 27 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 16 1.3384 -5.2330 -0.0011 12 8 0.6631 -5.4195 -1.2374 13 8 0.6657 -5.4199 1.2366 14 7 2.5205 -6.3926 -0.0018 15 6 3.4164 -6.5262 1.1497 16 1 3.4589 -5.5797 1.6886 17 6 4.7973 -6.8945 0.6717 18 6 4.9513 -7.7239 -0.4234 19 6 6.2180 -8.0679 -0.8572 20 6 7.3307 -7.5799 -0.1979 21 6 7.1766 -6.7501 0.8969 22 6 5.9100 -6.4075 1.3318 23 6 2.8903 -7.6202 2.0809 24 6 3.8725 -7.8356 3.2508 25 6 3.8391 -9.3642 3.4984 26 6 3.7385 -9.9406 2.0643 27 6 2.8052 -8.9586 1.3264 28 1 -0.4851 0.8401 0.0004 29 1 0.6241 -2.5566 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.8727 -3.6046 0.8878 32 1 2.8713 -3.6039 -0.8922 33 1 2.6199 -6.9834 -0.7647 34 1 4.0820 -8.1043 -0.9392 35 1 6.3383 -8.7163 -1.7125 36 1 8.3203 -7.8472 -0.5380 37 1 8.0460 -6.3691 1.4123 38 1 5.7896 -5.7595 2.1874 39 1 1.9078 -7.3440 2.4633 40 1 4.8762 -7.5165 2.9700 41 1 3.5342 -7.2981 4.1368 42 1 2.9651 -9.6410 4.0881 43 1 4.7559 -9.6969 3.9850 44 1 3.3025 -10.9394 2.0842 45 1 4.7199 -9.9631 1.5904 46 1 1.7814 -9.3323 1.3435 47 1 3.1378 -8.8285 0.2966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069846291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = -88.814244 kcal Electronic energy + Delta-G solvation = -27989.954615 eV Core-core repulsion = 24262.798248 eV Total energy + Delta-G solvation = -3727.156367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21184 -38.64217 -38.12260 -37.01945 -36.02244 -35.90487 -33.14155 -32.18330 -31.57803 -29.83258 -29.39103 -27.60592 -25.70306 -23.78411 -23.35991 -22.42406 -21.37797 -20.67987 -19.93952 -19.15837 -18.64494 -17.81793 -17.11666 -16.94353 -16.79368 -16.51594 -16.42634 -16.11510 -15.66686 -15.26826 -15.03781 -14.50941 -14.45238 -14.32427 -13.91714 -13.83708 -13.72911 -13.32199 -13.21986 -13.13511 -13.11197 -12.95638 -12.79119 -12.39041 -12.28108 -12.19893 -12.11422 -11.99138 -11.88209 -11.78465 -11.73914 -11.67692 -11.36291 -11.29050 -11.04368 -10.65896 -10.38749 -9.70089 -9.55121 -8.26387 -6.40329 -0.70548 0.49262 0.57689 1.40773 1.41284 1.54637 1.81386 2.37710 2.77194 2.95290 3.07196 3.24224 3.58306 3.70585 3.77864 3.92948 3.99524 4.01354 4.07292 4.19845 4.24303 4.36087 4.44503 4.47989 4.63655 4.69693 4.71600 4.74232 4.82113 4.89290 4.94662 4.98307 5.09466 5.13911 5.16306 5.22167 5.25913 5.27300 5.28809 5.41366 5.51229 5.56345 5.65941 5.68075 5.71205 5.74472 6.04883 6.06690 6.17750 6.73313 7.29942 8.86127 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.003478 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.837278 B = 8047.855754 C = 8938.981155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.973 3.027 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.021 3.979 10 C -0.589 4.589 11 S 2.618 3.382 12 O -0.999 6.999 13 O -0.989 6.989 14 N -1.101 6.101 15 C 0.193 3.807 16 H 0.094 0.906 17 C -0.084 4.084 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.127 4.127 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.126 4.126 28 H 0.267 0.733 29 H 0.005 0.995 30 H 0.008 0.992 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.422 0.578 34 H 0.128 0.872 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.065 -20.522 3.383 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.093 0.907 9 C -0.018 4.018 10 C -0.721 4.721 11 S 2.715 3.285 12 O -0.989 6.989 13 O -0.978 6.978 14 N -0.862 5.862 15 C 0.086 3.914 16 H 0.112 0.888 17 C -0.085 4.085 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.128 4.128 24 C -0.165 4.165 25 C -0.158 4.158 26 C -0.153 4.153 27 C -0.164 4.164 28 H 0.076 0.924 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.260 0.740 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.925 -20.499 3.522 26.196 hybrid contribution 0.159 1.156 -0.396 1.232 sum 16.084 -19.343 3.126 25.350 Atomic orbital electron populations 1.70104 1.08063 1.28261 1.50928 1.26106 0.95843 1.03844 0.94372 0.85274 0.79175 0.78037 0.77824 1.17934 1.20396 1.20281 1.21529 0.93939 0.90750 1.51427 0.90685 1.18818 0.93551 0.93051 0.96372 1.30355 1.12827 1.16748 1.12186 1.04542 0.74667 0.76379 0.72910 1.93503 1.72958 1.85796 1.46627 1.93514 1.72539 1.85247 1.46545 1.55509 1.52133 1.50615 1.27901 1.19853 0.86445 0.99802 0.85260 0.88815 1.19740 0.93478 0.98608 0.96700 1.21095 0.98054 0.97960 0.96614 1.21372 0.92163 1.00209 1.00314 1.21450 0.99558 0.97501 0.95850 1.21374 0.97299 0.98062 0.97198 1.21198 0.92229 1.00244 1.00314 1.22249 0.99677 0.95228 0.95600 1.22612 0.99842 0.97203 0.96825 1.22447 1.01834 0.94626 0.96858 1.22286 0.99438 0.98133 0.95460 1.22322 0.99669 0.94073 1.00313 0.92387 0.97647 0.97344 0.84125 0.84195 0.74030 0.85466 0.84413 0.84310 0.84299 0.84945 0.91343 0.89642 0.91599 0.91888 0.90656 0.91462 0.91429 0.92799 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 3 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 1.10 4.98 29.85 0.15 1.25 16 10 C -0.59 -22.48 5.91 71.98 0.43 -22.06 16 11 S 2.62 93.98 5.37 -56.49 -0.30 93.67 16 12 O -1.00 -42.17 18.08 -127.65 -2.31 -44.48 16 13 O -0.99 -40.92 17.30 -127.65 -2.21 -43.13 16 14 N -1.10 -27.80 4.81 -172.52 -0.83 -28.63 16 15 C 0.19 4.33 2.21 44.24 0.10 4.43 16 16 H 0.09 2.09 7.09 -2.39 -0.02 2.07 16 17 C -0.08 -1.57 4.12 -19.87 -0.08 -1.66 16 18 C -0.12 -2.03 7.80 22.27 0.17 -1.85 16 19 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 20 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 21 C -0.12 -1.78 10.05 22.27 0.22 -1.56 16 22 C -0.12 -2.07 7.71 22.27 0.17 -1.90 16 23 C -0.11 -2.37 3.01 -10.07 -0.03 -2.40 16 24 C -0.13 -2.30 6.17 31.67 0.20 -2.10 16 25 C -0.12 -1.90 6.91 31.89 0.22 -1.68 16 26 C -0.12 -1.84 6.83 31.67 0.22 -1.62 16 27 C -0.13 -2.45 5.64 31.32 0.18 -2.27 16 28 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.14 4.64 7.47 -2.39 -0.02 4.63 16 32 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 33 H 0.42 8.91 6.46 -96.75 -0.62 8.28 16 34 H 0.13 1.94 5.08 -2.91 -0.01 1.93 16 35 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 36 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 37 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.13 1.98 7.89 -2.91 -0.02 1.96 16 39 H 0.07 1.87 7.63 -2.39 -0.02 1.85 16 40 H 0.09 1.40 4.88 -2.39 -0.01 1.39 16 41 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.08 1.36 3.96 -2.39 -0.01 1.35 16 Total: -1.00 -74.92 379.67 0.09 -74.83 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.35 Total: 24.94 kcal Atomic # 6 Polarization: -68.95 SS G_CDS: 3.08 Total: -65.87 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -0.54 Total: -85.31 kcal Atomic # 8 Polarization: -83.09 SS G_CDS: -4.52 Total: -87.61 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 93.98 SS G_CDS: -0.30 Total: 93.67 kcal Total: -74.92 0.09 -74.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069846291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.982 kcal (2) G-P(sol) polarization free energy of solvation -74.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds