Wall clock time and date at job start Tue Mar 31 2020 05:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99730 * 2 1 4 4 H 1.08002 * 119.99821 * 208.27012 * 3 2 1 5 5 C 1.38808 * 120.00084 * 28.27650 * 3 2 1 6 6 N 1.31625 * 120.00088 * 13.00050 * 5 3 2 7 7 Si 1.86798 * 120.00028 * 192.99281 * 5 3 2 8 8 H 1.48499 * 109.47267 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.46999 * 120.00093 * 7 5 3 10 10 H 1.48498 * 109.47652 * 239.99993 * 7 5 3 11 11 C 1.46499 * 120.00212 * 180.02562 * 2 1 3 12 12 H 1.09009 * 109.46591 * 354.05759 * 11 2 1 13 13 C 1.50697 * 109.46905 * 234.06311 * 11 2 1 14 14 C 1.38674 * 120.42132 * 128.32818 * 13 11 2 15 15 C 1.38624 * 118.42603 * 179.77827 * 14 13 11 16 16 C 1.38225 * 119.15579 * 0.47910 * 15 14 13 17 17 N 1.31860 * 120.76800 * 359.76215 * 16 15 14 18 18 C 1.31884 * 121.72099 * 0.02562 * 17 16 15 19 19 C 1.50695 * 109.47729 * 114.05970 * 11 2 1 20 20 C 1.38244 * 119.98827 * 7.53469 * 19 11 2 21 21 C 1.38203 * 120.02256 * 179.72210 * 20 19 11 22 22 C 1.38379 * 120.01254 * 0.55525 * 21 20 19 23 23 Cl 1.73604 * 120.00779 * 179.74601 * 22 21 20 24 24 C 1.38305 * 119.98881 * 359.72041 * 22 21 20 25 25 C 1.38328 * 119.99776 * 187.81220 * 19 11 2 26 26 Cl 1.73598 * 120.00516 * 359.97438 * 25 19 11 27 27 H 1.08998 * 109.46900 * 173.51930 * 1 2 3 28 28 H 1.09008 * 109.46724 * 293.51652 * 1 2 3 29 29 H 1.08998 * 109.47623 * 53.51381 * 1 2 3 30 30 H 0.96993 * 120.00046 * 180.02562 * 6 5 3 31 31 H 1.08009 * 120.78691 * 0.02562 * 14 13 11 32 32 H 1.07993 * 120.42497 * 180.22471 * 15 14 13 33 33 H 1.08005 * 119.62051 * 179.79166 * 16 15 14 34 34 H 1.08000 * 119.61726 * 180.02562 * 18 17 16 35 35 H 1.07995 * 119.98932 * 359.97438 * 20 19 11 36 36 H 1.08001 * 119.99543 * 180.25279 * 21 20 19 37 37 H 1.07999 * 120.02018 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1331 1.2418 -0.4430 5 6 1.5798 2.3163 0.5695 6 7 0.5104 2.2031 1.3284 7 14 2.3308 3.9983 0.2590 8 1 3.5181 3.8554 -0.6214 9 1 1.3287 4.8737 -0.4004 10 1 2.7422 4.6031 1.5513 11 6 2.1976 -1.2687 -0.0006 12 1 1.4939 -2.0945 0.1055 13 6 3.1708 -1.2872 1.1498 14 6 3.1906 -2.3539 2.0358 15 6 4.1060 -2.3304 3.0765 16 6 4.9559 -1.2475 3.2015 17 7 4.9057 -0.2480 2.3429 18 6 4.0507 -0.2387 1.3388 19 6 2.9504 -1.4136 -1.2979 20 6 2.9999 -0.3584 -2.1897 21 6 3.6950 -0.4886 -3.3771 22 6 4.3321 -1.6793 -3.6792 23 17 5.1996 -1.8449 -5.1738 24 6 4.2781 -2.7372 -2.7900 25 6 3.5869 -2.6043 -1.5988 26 17 3.5191 -3.9314 -0.4818 27 1 -0.3633 -1.0211 -0.1160 28 1 -0.3633 0.4101 0.9424 29 1 -0.3634 0.6110 -0.8262 30 1 0.1120 2.9930 1.7260 31 1 2.5115 -3.1851 1.9154 32 1 4.1518 -3.1458 3.7830 33 1 5.6697 -1.2198 4.0115 34 1 4.0392 0.5975 0.6553 35 1 2.4987 0.5693 -1.9565 36 1 3.7368 0.3374 -4.0716 37 1 4.7756 -3.6665 -3.0251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069869808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:33 Heat of formation + Delta-G solvation = 88.410912 kcal Electronic energy + Delta-G solvation = -24690.304208 eV Core-core repulsion = 21099.717737 eV Total energy + Delta-G solvation = -3590.586471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 336.049 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00238 -38.88467 -36.72232 -36.31784 -35.69814 -32.88454 -31.50020 -30.67763 -30.30946 -29.90464 -26.39508 -25.93702 -22.86426 -22.62253 -22.23355 -21.95968 -20.09146 -17.65970 -16.98269 -16.02009 -15.97762 -15.40703 -15.21702 -15.03714 -14.31001 -14.11041 -13.72855 -13.53192 -13.25774 -13.07147 -12.83154 -12.48897 -12.34108 -12.12129 -12.06047 -11.79858 -11.48221 -11.07194 -10.95781 -10.87908 -10.86563 -10.75279 -10.64763 -10.55343 -10.11661 -9.73247 -9.08016 -8.89429 -8.70764 -8.62018 -8.30584 -8.14123 -6.97269 -5.90849 -3.54478 1.26308 1.41667 1.84885 1.97084 2.03900 2.51293 3.25712 3.34227 3.35776 3.77597 4.26609 4.52540 4.87583 5.04562 5.10151 5.22056 5.26981 5.37913 5.46008 5.55711 5.60536 5.70611 5.79372 5.83485 6.03258 6.13534 6.23225 6.27207 6.51466 6.53688 6.59394 6.71459 6.80826 6.99844 7.08345 7.12577 7.40682 7.54323 7.69633 8.18877 8.73502 8.94250 9.55837 10.06493 11.00551 Molecular weight = 336.05amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.006005 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.345833 B = 4661.524469 C = 6251.078975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.583 5.583 3 C -0.277 4.277 4 H 0.082 0.918 5 C 0.022 3.978 6 N -0.880 5.880 7 Si 0.898 3.102 8 H -0.271 1.271 9 H -0.286 1.286 10 H -0.286 1.286 11 C 0.248 3.752 12 H 0.078 0.922 13 C -0.119 4.119 14 C -0.067 4.067 15 C -0.192 4.192 16 C 0.080 3.920 17 N -0.495 5.495 18 C 0.126 3.874 19 C -0.067 4.067 20 C -0.076 4.076 21 C -0.116 4.116 22 C -0.034 4.034 23 Cl -0.079 7.079 24 C -0.115 4.115 25 C -0.024 4.024 26 Cl -0.068 7.068 27 H 0.010 0.990 28 H 0.075 0.925 29 H 0.020 0.980 30 H 0.257 0.743 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.133 0.867 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -9.769 -5.358 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.302 5.302 3 C -0.405 4.405 4 H 0.099 0.901 5 C -0.181 4.181 6 N -0.521 5.521 7 Si 0.727 3.273 8 H -0.196 1.196 9 H -0.212 1.212 10 H -0.212 1.212 11 C 0.139 3.861 12 H 0.096 0.904 13 C -0.123 4.123 14 C -0.093 4.093 15 C -0.212 4.212 16 C -0.078 4.078 17 N -0.204 5.204 18 C -0.030 4.030 19 C -0.071 4.071 20 C -0.093 4.093 21 C -0.135 4.135 22 C -0.061 4.061 23 Cl -0.050 7.050 24 C -0.135 4.135 25 C -0.052 4.052 26 Cl -0.039 7.039 27 H 0.029 0.971 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.193 0.807 35 H 0.199 0.801 36 H 0.151 0.849 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.167 -9.030 -5.191 11.627 hybrid contribution -0.167 -0.079 -0.077 0.200 sum 5.000 -9.109 -5.268 11.650 Atomic orbital electron populations 1.21293 0.81883 0.95452 1.02415 1.44056 1.01857 0.99458 1.84877 1.19100 1.02334 0.86102 1.32991 0.90115 1.25204 0.97676 0.99058 0.96129 1.69918 1.22130 1.28563 1.31475 0.86286 0.78934 0.84019 0.78097 1.19583 1.21220 1.21199 1.18120 0.90438 0.91202 0.86390 0.90374 1.21120 0.97571 0.95040 0.98539 1.21310 0.97116 0.97306 0.93591 1.21842 0.99102 1.00394 0.99842 1.22548 0.97598 0.90249 0.97366 1.67786 1.22445 1.26197 1.03984 1.23530 0.88446 0.96735 0.94293 1.20992 0.96482 0.91095 0.98538 1.22144 0.95794 1.00884 0.90515 1.21296 0.97843 0.96014 0.98304 1.20710 1.00420 0.96042 0.88927 1.98346 1.75723 1.97988 1.32992 1.20670 1.01116 0.98961 0.92711 1.20614 1.02293 0.90269 0.92008 1.98342 1.97293 1.46576 1.61641 0.97142 0.90743 0.96165 0.93243 0.86272 0.86193 0.84238 0.80741 0.80129 0.84891 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.89 9.58 59.85 0.57 3.46 16 2 N -0.58 -12.55 2.37 -176.15 -0.42 -12.96 16 3 C -0.28 -6.38 4.86 -15.06 -0.07 -6.45 16 4 H 0.08 1.82 4.48 -52.49 -0.24 1.58 16 5 C 0.02 0.54 5.24 -17.43 -0.09 0.45 16 6 N -0.88 -23.10 10.68 55.49 0.59 -22.51 16 7 Si 0.90 19.92 29.57 -169.99 -5.03 14.89 16 8 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.25 4.66 2.23 -70.24 -0.16 4.50 16 12 H 0.08 1.42 7.16 -51.92 -0.37 1.05 16 13 C -0.12 -2.28 4.29 -104.48 -0.45 -2.72 16 14 C -0.07 -1.13 7.97 -39.28 -0.31 -1.44 16 15 C -0.19 -3.04 10.11 -39.44 -0.40 -3.43 16 16 C 0.08 1.37 11.18 -17.54 -0.20 1.18 16 17 N -0.50 -10.10 10.36 -13.25 -0.14 -10.24 16 18 C 0.13 2.64 9.61 -17.55 -0.17 2.48 16 19 C -0.07 -1.16 5.03 -104.59 -0.53 -1.69 16 20 C -0.08 -1.28 8.28 -39.59 -0.33 -1.61 16 21 C -0.12 -1.72 9.83 -39.54 -0.39 -2.11 16 22 C -0.03 -0.49 6.32 -39.50 -0.25 -0.74 16 23 Cl -0.08 -0.99 28.96 -51.86 -1.50 -2.49 16 24 C -0.12 -1.64 9.62 -39.51 -0.38 -2.02 16 25 C -0.02 -0.38 6.21 -39.50 -0.25 -0.63 16 26 Cl -0.07 -0.96 24.95 -51.86 -1.29 -2.26 16 27 H 0.01 0.19 7.59 -51.93 -0.39 -0.21 16 28 H 0.07 1.83 6.02 -51.92 -0.31 1.51 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.12 1.80 7.52 -52.48 -0.39 1.41 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 34 H 0.18 3.88 4.54 -52.49 -0.24 3.64 16 35 H 0.18 3.40 4.79 -52.49 -0.25 3.15 16 36 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -25.73 329.35 -9.66 -35.39 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -3.45 Total: 6.00 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.39 Total: -10.78 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.04 Total: -45.71 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -2.80 Total: -4.75 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -25.73 -9.66 -35.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069869808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.801 kcal (2) G-P(sol) polarization free energy of solvation -25.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds