Wall clock time and date at job start Tue Mar 31 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00339 * 2 1 4 4 H 1.48499 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46974 * 300.00374 * 3 2 1 6 6 H 1.48505 * 109.46724 * 59.99813 * 3 2 1 7 7 C 1.37883 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99877 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00063 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00258 * 96.43839 * 10 9 7 12 12 C 1.50705 * 109.47024 * 269.99898 * 11 10 9 13 13 C 1.38232 * 119.61583 * 94.97596 * 12 11 10 14 14 C 1.38624 * 119.15793 * 179.79098 * 13 12 11 15 15 C 1.38675 * 118.42310 * 0.47400 * 14 13 12 16 16 C 1.38182 * 119.16142 * 359.50739 * 15 14 13 17 17 N 1.31846 * 119.61817 * 275.00043 * 12 11 10 18 18 C 1.34777 * 120.00236 * 276.43771 * 10 9 7 19 19 O 1.21606 * 120.00580 * 175.71352 * 18 10 9 20 20 C 1.47398 * 119.99559 * 355.70924 * 18 10 9 21 21 N 1.31570 * 126.82217 * 5.93076 * 20 18 10 22 22 N 1.28387 * 111.96273 * 180.02562 * 21 20 18 23 23 H 0.96997 * 124.37108 * 180.02562 * 22 21 20 24 24 C 1.37042 * 111.26138 * 359.97438 * 22 21 20 25 25 C 1.39119 * 134.73319 * 180.02562 * 24 22 21 26 26 C 1.36688 * 119.78583 * 179.25057 * 25 24 22 27 27 C 1.38904 * 120.89484 * 0.62451 * 26 25 24 28 28 C 1.36719 * 120.51884 * 359.60055 * 27 26 25 29 29 C 1.39189 * 119.51346 * 359.97438 * 28 27 26 30 30 H 0.96999 * 120.00243 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46721 * 59.99974 * 9 7 2 32 32 H 1.09002 * 109.47109 * 300.00690 * 9 7 2 33 33 H 1.08995 * 109.47446 * 150.00202 * 11 10 9 34 34 H 1.08997 * 109.46863 * 29.99739 * 11 10 9 35 35 H 1.08000 * 120.41564 * 359.97438 * 13 12 11 36 36 H 1.07999 * 120.78909 * 180.22922 * 14 13 12 37 37 H 1.07996 * 120.42219 * 179.78057 * 15 14 13 38 38 H 1.07996 * 119.61926 * 180.25308 * 16 15 14 39 39 H 1.08000 * 120.10777 * 359.97438 * 25 24 22 40 40 H 1.08005 * 119.55784 * 180.21734 * 26 25 24 41 41 H 1.07995 * 119.74097 * 179.57655 * 27 26 25 42 42 H 1.08001 * 120.23724 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.5708 -4.2619 1.2602 12 6 3.7701 -3.5671 1.8518 13 6 3.5875 -2.5737 2.7955 14 6 4.6975 -1.9438 3.3366 15 6 5.9551 -2.3315 2.8991 16 6 6.0596 -3.3328 1.9526 17 7 4.9814 -3.9134 1.4629 18 6 2.7403 -4.0399 -1.1603 19 8 3.5884 -4.9113 -1.1531 20 6 2.2999 -3.4508 -2.4377 21 7 1.4790 -2.4349 -2.5961 22 7 1.2908 -2.1584 -3.8356 23 1 0.7195 -1.4431 -4.1565 24 6 2.0020 -3.0034 -4.6469 25 6 2.1554 -3.1413 -6.0227 26 6 2.9793 -4.1120 -6.5200 27 6 3.6590 -4.9750 -5.6700 28 6 3.5226 -4.8644 -4.3141 29 6 2.6954 -3.8772 -3.7865 30 1 -0.4850 0.8400 -0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 2.8127 -5.3081 1.0731 34 1 1.7352 -4.2013 1.9574 35 1 2.5927 -2.2939 3.1093 36 1 4.5855 -1.1669 4.0783 37 1 6.8417 -1.8599 3.2964 38 1 7.0355 -3.6434 1.6097 39 1 1.6344 -2.4761 -6.6953 40 1 3.0985 -4.2135 -7.5887 41 1 4.2999 -5.7397 -6.0833 42 1 4.0529 -5.5382 -3.6574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069921690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:31 Heat of formation + Delta-G solvation = 108.232574 kcal Electronic energy + Delta-G solvation = -28811.210452 eV Core-core repulsion = 24951.333044 eV Total energy + Delta-G solvation = -3859.877409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.95393 -39.79175 -38.43955 -37.40565 -35.01717 -32.76710 -32.14059 -31.91021 -31.15165 -29.81414 -29.42548 -27.51425 -26.17752 -23.59379 -23.07433 -22.84482 -22.43392 -21.98944 -21.22239 -18.57155 -17.50428 -17.09806 -16.63860 -16.29480 -15.99815 -15.47816 -15.26737 -15.17929 -14.97553 -14.93221 -14.39180 -13.81388 -13.76328 -13.49447 -13.29990 -12.88602 -12.60478 -12.48036 -12.17594 -11.92152 -11.85242 -11.66683 -11.37678 -11.29233 -10.97340 -10.87937 -10.74269 -10.22446 -9.76772 -9.70709 -9.65044 -9.40341 -9.21334 -8.91702 -8.56266 -8.46375 -8.35817 -7.79797 -7.60966 -6.07010 -4.07385 1.24318 1.54743 1.66488 1.78604 2.51324 3.19412 3.21339 3.30468 3.37139 3.80973 3.89389 4.25442 4.37938 4.44932 4.79079 4.80145 4.99335 5.14767 5.17839 5.21074 5.23543 5.28381 5.44716 5.48584 5.60576 5.64161 5.80298 5.88254 5.96793 6.03440 6.19291 6.20372 6.24743 6.50010 6.57546 6.63664 6.70679 6.76328 6.79752 7.08371 7.16193 7.32810 7.49298 7.72291 7.87059 8.21593 8.28876 8.46160 8.55430 8.94094 9.08067 9.55307 11.00732 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.009915 B = 0.005130 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.254904 B = 5456.432702 C = 7217.573192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.501 4.501 8 H 0.052 0.948 9 C 0.228 3.772 10 N -0.582 5.582 11 C 0.172 3.828 12 C 0.124 3.876 13 C -0.135 4.135 14 C -0.084 4.084 15 C -0.182 4.182 16 C 0.088 3.912 17 N -0.458 5.458 18 C 0.603 3.397 19 O -0.543 6.543 20 C 0.000 4.000 21 N -0.133 5.133 22 N -0.424 5.424 23 H 0.443 0.557 24 C 0.056 3.944 25 C -0.123 4.123 26 C -0.094 4.094 27 C -0.152 4.152 28 C -0.041 4.041 29 C -0.108 4.108 30 H 0.259 0.741 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -5.726 -4.010 8.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.108 3.892 10 N -0.313 5.313 11 C 0.048 3.952 12 C -0.015 4.015 13 C -0.155 4.155 14 C -0.110 4.110 15 C -0.202 4.202 16 C -0.070 4.070 17 N -0.167 5.167 18 C 0.389 3.611 19 O -0.419 6.419 20 C -0.170 4.170 21 N 0.038 4.962 22 N -0.142 5.142 23 H 0.288 0.712 24 C -0.057 4.057 25 C -0.145 4.145 26 C -0.115 4.115 27 C -0.172 4.172 28 C -0.062 4.062 29 C -0.116 4.116 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.164 0.836 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.777 -5.967 -4.002 8.117 hybrid contribution 0.561 2.188 -0.007 2.258 sum 4.337 -3.779 -4.009 7.012 Atomic orbital electron populations 1.69925 1.05637 1.26375 1.51185 1.24740 0.94602 0.98340 0.95478 0.86707 0.80377 0.84427 0.77550 1.20045 1.21217 1.21027 1.21301 0.92886 0.90270 1.49547 0.93005 1.19894 0.87590 0.82259 0.99463 1.48072 1.44410 1.34973 1.03811 1.20162 0.92538 0.96674 0.85870 1.21635 0.93236 0.94204 0.92425 1.21988 1.00030 0.96078 0.97418 1.21488 0.92572 0.98227 0.98716 1.22033 0.98126 0.99788 1.00246 1.22648 0.97321 0.93322 0.93686 1.67571 0.98405 1.27392 1.23322 1.16668 0.81063 0.81539 0.81781 1.90736 1.31806 1.32591 1.86790 1.22801 1.02812 0.98017 0.93400 1.73941 1.12447 1.11662 0.98145 1.43596 1.39462 1.28891 1.02286 0.71244 1.19342 0.97973 0.94734 0.93638 1.19718 1.02741 1.01426 0.90580 1.20609 0.96326 0.95007 0.99554 1.20725 1.02334 1.01056 0.93071 1.20375 0.95201 0.95660 0.94919 1.19505 1.01562 0.99153 0.91336 0.93099 0.91347 0.94991 0.89169 0.89212 0.84612 0.85451 0.85687 0.83599 0.85987 0.85814 0.85879 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.88 21.03 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.50 -12.96 8.48 -34.44 -0.29 -13.25 16 8 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.23 5.40 4.81 -5.20 -0.02 5.37 16 10 N -0.58 -12.68 2.46 -177.72 -0.44 -13.11 16 11 C 0.17 3.24 5.72 -5.19 -0.03 3.21 16 12 C 0.12 2.39 6.36 -82.59 -0.53 1.86 16 13 C -0.13 -2.37 9.72 -39.44 -0.38 -2.76 16 14 C -0.08 -1.31 10.18 -39.28 -0.40 -1.71 16 15 C -0.18 -2.71 10.11 -39.44 -0.40 -3.11 16 16 C 0.09 1.46 11.18 -17.55 -0.20 1.27 16 17 N -0.46 -9.08 10.27 -9.47 -0.10 -9.18 16 18 C 0.60 13.70 7.60 -12.53 -0.10 13.60 16 19 O -0.54 -12.77 16.05 5.27 0.08 -12.69 16 20 C 0.00 0.01 6.99 -80.76 -0.56 -0.56 16 21 N -0.13 -2.85 7.99 34.46 0.28 -2.58 16 22 N -0.42 -7.42 6.85 32.34 0.22 -7.20 16 23 H 0.44 6.32 8.96 -190.49 -1.71 4.62 16 24 C 0.06 0.94 7.38 -84.21 -0.62 0.32 16 25 C -0.12 -1.62 10.03 -39.82 -0.40 -2.02 16 26 C -0.09 -1.13 9.96 -39.90 -0.40 -1.53 16 27 C -0.15 -2.00 9.98 -39.88 -0.40 -2.40 16 28 C -0.04 -0.68 9.88 -39.78 -0.39 -1.08 16 29 C -0.11 -2.05 6.34 -105.05 -0.67 -2.72 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.07 1.71 5.34 -51.93 -0.28 1.44 16 32 H 0.03 0.77 7.82 -51.93 -0.41 0.37 16 33 H 0.09 1.67 7.48 -51.93 -0.39 1.28 16 34 H 0.09 1.45 7.75 -51.93 -0.40 1.04 16 35 H 0.14 2.28 8.06 -52.49 -0.42 1.85 16 36 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.14 2.25 7.67 -52.49 -0.40 1.85 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -32.58 365.50 -10.70 -43.28 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.09 Total: 6.98 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -5.88 Total: -3.75 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.70 Total: -55.34 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.58 -10.70 -43.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069921690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.514 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds