Wall clock time and date at job start Tue Mar 31 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46894 * 111.00283 * 2 1 4 4 N 1.36597 * 110.99698 * 123.96019 * 2 1 3 5 5 C 1.39530 * 123.87984 * 120.00300 * 4 2 1 6 6 C 1.39367 * 130.82790 * 359.94427 * 5 4 2 7 7 C 1.37937 * 120.13447 * 180.02562 * 6 5 4 8 8 C 1.38301 * 120.37427 * 0.02562 * 7 6 5 9 9 C 1.38395 * 119.82684 * 359.95747 * 8 7 6 10 10 C 1.37679 * 119.91061 * 0.04176 * 9 8 7 11 11 C 1.51130 * 132.84413 * 179.97438 * 10 9 8 12 12 C 1.53000 * 110.51293 * 298.66822 * 11 10 9 13 13 C 1.50703 * 109.47446 * 178.89105 * 12 11 10 14 14 H 1.08004 * 119.99591 * 354.35548 * 13 12 11 15 15 C 1.37870 * 120.00172 * 174.07762 * 13 12 11 16 16 N 1.31518 * 119.99946 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00304 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47224 * 89.99524 * 17 15 13 19 19 H 1.48496 * 109.47484 * 209.99984 * 17 15 13 20 20 H 1.48501 * 109.46821 * 330.00230 * 17 15 13 21 21 C 1.50705 * 110.51330 * 61.23900 * 11 10 9 22 22 C 1.38235 * 119.99968 * 290.52519 * 21 11 10 23 23 C 1.38229 * 119.99882 * 179.78481 * 22 21 11 24 24 C 1.38235 * 120.00106 * 0.46086 * 23 22 21 25 25 C 1.38232 * 119.99956 * 359.77178 * 24 23 22 26 26 C 1.38233 * 120.00284 * 0.02562 * 25 24 23 27 27 C 1.34369 * 123.87365 * 299.96535 * 4 2 1 28 28 O 1.21286 * 126.44788 * 0.05314 * 27 4 2 29 29 H 1.09001 * 109.46885 * 296.04501 * 1 2 3 30 30 H 1.08994 * 109.46589 * 56.04482 * 1 2 3 31 31 H 1.08997 * 109.47072 * 176.04604 * 1 2 3 32 32 H 1.08998 * 109.47314 * 183.95395 * 3 2 1 33 33 H 1.09005 * 109.47307 * 303.95918 * 3 2 1 34 34 H 1.09002 * 109.47135 * 63.95646 * 3 2 1 35 35 H 1.08004 * 119.93375 * 0.02562 * 6 5 4 36 36 H 1.08002 * 119.81298 * 179.97438 * 7 6 5 37 37 H 1.07999 * 120.08669 * 179.97438 * 8 7 6 38 38 H 1.08001 * 120.03927 * 180.02562 * 9 8 7 39 39 H 1.09003 * 109.47194 * 58.89650 * 12 11 10 40 40 H 1.08992 * 109.47000 * 298.89367 * 12 11 10 41 41 H 0.96998 * 119.99752 * 179.97438 * 16 15 13 42 42 H 1.07997 * 119.99906 * 359.97438 * 22 21 11 43 43 H 1.07997 * 120.00425 * 180.25213 * 23 22 21 44 44 H 1.07997 * 120.00202 * 179.78940 * 24 23 22 45 45 H 1.08004 * 120.00243 * 180.02562 * 25 24 23 46 46 H 1.07997 * 120.00805 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 7 1.9585 -0.7124 1.0577 5 6 2.7780 -1.8341 0.9275 6 6 3.2731 -2.4741 -0.2073 7 6 4.0784 -3.5866 -0.0790 8 6 4.4006 -4.0760 1.1737 9 6 3.9131 -3.4457 2.3053 10 6 3.1091 -2.3351 2.1799 11 6 2.4305 -1.4384 3.1896 12 6 1.4343 -2.2375 4.0322 13 6 0.7920 -1.3279 5.0477 14 1 1.1312 -0.3076 5.1497 15 6 -0.2325 -1.7965 5.8426 16 7 -0.6489 -3.0375 5.7149 17 14 -1.0291 -0.6689 7.1008 18 1 -2.1729 0.0417 6.4747 19 1 -1.5156 -1.4743 8.2496 20 1 -0.0320 0.3226 7.5784 21 6 3.4521 -0.7711 4.0741 22 6 4.1656 -1.5190 4.9919 23 6 5.1058 -0.9077 5.8000 24 6 5.3257 0.4532 5.6970 25 6 4.6088 1.2019 4.7825 26 6 3.6715 0.5899 3.9714 27 6 1.7067 -0.4129 2.3432 28 8 1.0270 0.5060 2.7491 29 1 -0.3633 0.4512 0.9233 30 1 -0.3632 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0829 1.3431 -0.0709 33 1 1.5899 1.9163 -0.8524 34 1 1.7046 1.8723 0.9233 35 1 3.0256 -2.0982 -1.1891 36 1 4.4589 -4.0787 -0.9619 37 1 5.0313 -4.9476 1.2687 38 1 4.1629 -3.8247 3.2853 39 1 1.9577 -3.0437 4.5463 40 1 0.6658 -2.6585 3.3840 41 1 -1.3693 -3.3672 6.2743 42 1 3.9906 -2.5814 5.0755 43 1 5.6662 -1.4926 6.5143 44 1 6.0578 0.9314 6.3307 45 1 4.7809 2.2650 4.7017 46 1 3.1111 1.1748 3.2572 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071767483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:59 Heat of formation + Delta-G solvation = 77.120662 kcal Electronic energy + Delta-G solvation = -30398.361936 eV Core-core repulsion = 26640.675757 eV Total energy + Delta-G solvation = -3757.686179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78301 -38.71539 -38.33558 -36.70198 -35.03883 -33.33934 -32.08946 -30.47561 -30.12993 -28.94673 -28.48574 -27.65660 -26.22331 -24.22581 -22.56849 -22.33217 -21.91858 -21.72501 -20.22721 -19.18085 -17.42817 -16.88039 -16.65325 -16.03142 -15.72762 -15.46810 -14.92134 -14.65367 -14.32824 -14.17687 -14.11834 -14.01276 -13.56169 -13.30786 -12.98522 -12.92320 -12.63360 -12.59166 -12.32041 -12.11149 -12.08182 -11.80864 -11.72745 -11.55477 -11.29525 -10.98586 -10.78553 -10.71406 -10.57125 -10.32894 -10.23393 -10.04706 -9.71075 -9.15695 -8.51900 -8.45747 -8.40169 -8.27151 -8.11415 -7.61632 -5.99431 -3.98726 1.51372 1.63391 1.89279 1.91998 2.60038 2.93861 3.36250 3.41547 3.48052 4.08191 4.19751 4.28881 4.50372 4.66247 4.98751 5.12231 5.16574 5.29167 5.31058 5.34170 5.39129 5.41756 5.43342 5.44683 5.55951 5.61249 5.65378 5.75404 5.80458 5.86500 5.97739 6.00408 6.06075 6.24535 6.31142 6.46671 6.51550 6.53296 6.58830 6.68643 6.77796 6.90593 6.94832 6.97430 7.13922 7.36171 7.40081 7.46865 7.47654 7.53291 8.00231 8.31337 8.64339 9.06402 9.64804 11.11882 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.009033 B = 0.005876 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.852706 B = 4763.617713 C = 5396.780739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.306 5.306 3 C -0.002 4.002 4 N -0.413 5.413 5 C 0.169 3.831 6 C -0.130 4.130 7 C -0.098 4.098 8 C -0.145 4.145 9 C -0.062 4.062 10 C -0.114 4.114 11 C -0.007 4.007 12 C 0.057 3.943 13 C -0.503 4.503 14 H 0.065 0.935 15 C 0.060 3.940 16 N -0.898 5.898 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.016 4.016 22 C -0.091 4.091 23 C -0.121 4.121 24 C -0.133 4.133 25 C -0.122 4.122 26 C -0.119 4.119 27 C 0.533 3.467 28 O -0.476 6.476 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.034 0.966 40 H 0.026 0.974 41 H 0.260 0.740 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.518 2.099 -10.864 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 N -0.119 5.119 3 C -0.150 4.150 4 N -0.224 5.224 5 C 0.074 3.926 6 C -0.151 4.151 7 C -0.116 4.116 8 C -0.164 4.164 9 C -0.080 4.080 10 C -0.118 4.118 11 C -0.012 4.012 12 C 0.020 3.980 13 C -0.541 4.541 14 H 0.084 0.916 15 C -0.141 4.141 16 N -0.538 5.538 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.017 4.017 22 C -0.109 4.109 23 C -0.139 4.139 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.137 4.137 27 C 0.321 3.679 28 O -0.347 6.347 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.047 2.424 -11.028 15.797 hybrid contribution -1.198 1.137 1.264 2.080 sum 9.849 3.561 -9.765 14.319 Atomic orbital electron populations 1.22945 0.85663 1.03721 1.02821 1.63055 1.08858 1.13337 1.26633 1.22921 1.01383 0.88135 1.02529 1.45369 1.47494 1.26660 1.02904 1.17899 0.92591 0.86970 0.95103 1.20295 1.00961 0.97224 0.96627 1.20785 0.97716 0.95612 0.97532 1.20978 1.02406 1.00941 0.92101 1.20266 0.95334 0.93214 0.99210 1.19937 1.00896 0.97965 0.92988 1.19398 0.95065 0.93364 0.93354 1.19092 0.91457 0.94201 0.93286 1.21147 1.17137 0.98095 1.17755 0.91648 1.24907 0.96683 0.94991 0.97489 1.69956 1.28629 1.14950 1.40259 0.86600 0.79768 0.80803 0.80987 1.20807 1.21336 1.19764 1.19002 0.94041 0.93090 0.95537 1.20859 0.95081 1.00244 0.94672 1.21011 0.98697 0.94805 0.99352 1.20975 1.00523 0.94343 0.99233 1.20931 0.97034 0.99178 0.96852 1.21054 0.98060 0.94328 1.00289 1.21107 0.80089 0.85113 0.81565 1.90717 1.37160 1.30711 1.76094 0.92373 0.89772 0.90535 0.90804 0.89674 0.93113 0.85682 0.85821 0.85785 0.85497 0.94821 0.95550 0.93063 0.85832 0.86403 0.86804 0.86845 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.06 9.57 60.07 0.57 0.52 16 2 N -0.31 -4.78 5.31 -128.55 -0.68 -5.47 16 3 C 0.00 -0.02 9.62 60.06 0.58 0.56 16 4 N -0.41 -7.56 2.60 -9.70 -0.03 -7.59 16 5 C 0.17 2.93 6.84 -83.69 -0.57 2.36 16 6 C -0.13 -1.84 10.03 -39.27 -0.39 -2.23 16 7 C -0.10 -1.19 10.01 -39.67 -0.40 -1.59 16 8 C -0.15 -1.84 10.07 -39.50 -0.40 -2.23 16 9 C -0.06 -0.95 9.73 -39.73 -0.39 -1.34 16 10 C -0.11 -2.08 4.91 -104.37 -0.51 -2.59 16 11 C -0.01 -0.14 0.54 -157.41 -0.09 -0.23 16 12 C 0.06 1.43 3.80 -27.88 -0.11 1.33 16 13 C -0.50 -14.18 7.68 -34.44 -0.26 -14.45 16 14 H 0.07 1.92 6.69 -52.48 -0.35 1.56 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 17 Si 0.89 22.69 29.54 -169.99 -5.02 17.67 16 18 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.02 -0.33 3.62 -104.62 -0.38 -0.71 16 22 C -0.09 -1.66 8.80 -39.59 -0.35 -2.01 16 23 C -0.12 -1.93 10.05 -39.59 -0.40 -2.32 16 24 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 25 C -0.12 -2.02 10.05 -39.59 -0.40 -2.42 16 26 C -0.12 -2.30 9.05 -39.58 -0.36 -2.66 16 27 C 0.53 11.41 4.56 -10.82 -0.05 11.36 16 28 O -0.48 -11.36 12.85 5.55 0.07 -11.29 16 29 H 0.06 1.03 6.56 -51.93 -0.34 0.69 16 30 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.89 8.12 -51.93 -0.42 0.46 16 34 H 0.05 0.79 6.83 -51.93 -0.35 0.44 16 35 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.81 7.23 -52.49 -0.38 1.43 16 39 H 0.03 0.86 7.27 -51.93 -0.38 0.48 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 2.17 6.50 -52.49 -0.34 1.83 16 43 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 46 H 0.11 2.24 5.88 -52.49 -0.31 1.93 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -32.75 373.63 -9.92 -42.67 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.24 Total: 3.81 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -4.39 Total: -19.45 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.03 Total: -39.04 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.07 Total: -11.29 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.75 -9.92 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071767483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.793 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds